data_6H7D # _model_server_result.job_id xuWPjEbJWVrupOtZMrZTxA _model_server_result.datetime_utc '2024-11-27 17:03:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6h7d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":600}' # _entry.id 6H7D # _exptl.entry_id 6H7D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.37 _cell.angle_gamma 90 _cell.entry_id 6H7D _cell.length_a 51.68 _cell.length_b 92.46 _cell.length_c 66.8 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6H7D _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 78 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 77 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 450 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 449 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.025 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id BGC _chem_comp.mon_nstd_flag . _chem_comp.name beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms beta-D-glucose;D-glucose;glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 BGC sing 70 n n C2 C1 BGC sing 71 n n C2 O2 BGC sing 72 n n C2 H2 BGC sing 73 n n C3 C4 BGC sing 74 n n C3 O3 BGC sing 75 n n C3 H3 BGC sing 76 n n C4 C5 BGC sing 77 n n C4 O4 BGC sing 78 n n C4 H4 BGC sing 79 n n C5 C6 BGC sing 80 n n C5 O5 BGC sing 81 n n C5 H5 BGC sing 82 n n C6 O6 BGC sing 83 n n C6 H61 BGC sing 84 n n C6 H62 BGC sing 85 n n C1 O1 BGC sing 86 n n C1 O5 BGC sing 87 n n C1 H1 BGC sing 88 n n O1 HO1 BGC sing 89 n n O2 HO2 BGC sing 90 n n O3 HO3 BGC sing 91 n n O4 HO4 BGC sing 92 n n O6 HO6 BGC sing 93 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version BGC DGlcpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 BGC b-D-glucopyranose 'COMMON NAME' GMML 1 BGC b-D-Glcp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 BGC Glc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6H7D _atom_sites.fract_transf_matrix[1][1] 0.01935 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006803 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010815 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015868 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BGC A 1 600 600 BGC BGC . C 3 P33 A 1 601 601 P33 PEG . D 4 PO4 A 1 602 602 PO4 PO4 . E 5 OLC A 1 603 603 OLC OLC . F 5 OLC A 1 604 604 OLC OLC . G 5 OLC A 1 605 605 OLC OLC . H 5 OLC A 1 606 606 OLC OLC . I 5 OLC A 1 607 607 OLC OLC . J 6 HOH A 1 701 716 HOH HOH . J 6 HOH A 2 702 708 HOH HOH . J 6 HOH A 3 703 718 HOH HOH . J 6 HOH A 4 704 728 HOH HOH . J 6 HOH A 5 705 715 HOH HOH . J 6 HOH A 6 706 703 HOH HOH . J 6 HOH A 7 707 701 HOH HOH . J 6 HOH A 8 708 720 HOH HOH . J 6 HOH A 9 709 707 HOH HOH . J 6 HOH A 10 710 712 HOH HOH . J 6 HOH A 11 711 726 HOH HOH . J 6 HOH A 12 712 711 HOH HOH . J 6 HOH A 13 713 705 HOH HOH . J 6 HOH A 14 714 723 HOH HOH . J 6 HOH A 15 715 717 HOH HOH . J 6 HOH A 16 716 710 HOH HOH . J 6 HOH A 17 717 702 HOH HOH . J 6 HOH A 18 718 724 HOH HOH . J 6 HOH A 19 719 719 HOH HOH . J 6 HOH A 20 720 731 HOH HOH . J 6 HOH A 21 721 714 HOH HOH . J 6 HOH A 22 722 727 HOH HOH . J 6 HOH A 23 723 709 HOH HOH . J 6 HOH A 24 724 722 HOH HOH . J 6 HOH A 25 725 704 HOH HOH . J 6 HOH A 26 726 713 HOH HOH . J 6 HOH A 27 727 706 HOH HOH . J 6 HOH A 28 728 721 HOH HOH . J 6 HOH A 29 729 729 HOH HOH . J 6 HOH A 30 730 725 HOH HOH . J 6 HOH A 31 731 730 HOH HOH . J 6 HOH A 32 732 733 HOH HOH . J 6 HOH A 33 733 732 HOH HOH . J 6 HOH A 34 734 734 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 BGC . . . B 2 -19.659 -5.872 -2.636 1 35.71 ? C2 BGC 600 A 1 HETATM 2 C C3 BGC . . . B 2 -19.69 -6.415 -1.243 1 33.62 ? C3 BGC 600 A 1 HETATM 3 C C4 BGC . . . B 2 -20.591 -5.598 -0.374 1 32.99 ? C4 BGC 600 A 1 HETATM 4 C C5 BGC . . . B 2 -22.006 -5.652 -0.945 1 26.65 ? C5 BGC 600 A 1 HETATM 5 C C6 BGC . . . B 2 -22.976 -4.857 -0.122 1 29.25 ? C6 BGC 600 A 1 HETATM 6 C C1 BGC . . . B 2 -21.071 -5.899 -3.227 1 34.1 ? C1 BGC 600 A 1 HETATM 7 O O1 BGC . . . B 2 -21.147 -5.334 -4.453 1 32.3 ? O1 BGC 600 A 1 HETATM 8 O O2 BGC . . . B 2 -18.788 -6.674 -3.452 1 36.81 ? O2 BGC 600 A 1 HETATM 9 O O3 BGC . . . B 2 -18.369 -6.486 -0.628 1 39.26 ? O3 BGC 600 A 1 HETATM 10 O O4 BGC . . . B 2 -20.571 -6.105 0.969 1 41.14 ? O4 BGC 600 A 1 HETATM 11 O O5 BGC . . . B 2 -22.019 -5.15 -2.34 1 30.67 ? O5 BGC 600 A 1 HETATM 12 O O6 BGC . . . B 2 -24.182 -4.828 -0.849 1 35.47 ? O6 BGC 600 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 12 #