data_6H7D # _model_server_result.job_id KmyOPN-5JmbBKTEoBmXk6Q _model_server_result.datetime_utc '2024-11-23 23:35:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6h7d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 6H7D # _exptl.entry_id 6H7D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 326.383 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.37 _cell.angle_gamma 90 _cell.entry_id 6H7D _cell.length_a 51.68 _cell.length_b 92.46 _cell.length_c 66.8 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6H7D _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 78 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 77 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 450 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 449 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.025 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C14 H30 O8' _chem_comp.formula_weight 326.383 _chem_comp.id P33 _chem_comp.mon_nstd_flag . _chem_comp.name 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'HEPTAETHYLENE GLYCOL;PEG330' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O22 C21 P33 sing 325 n n O22 H22 P33 sing 326 n n C21 C20 P33 sing 327 n n C21 H211 P33 sing 328 n n C21 H212 P33 sing 329 n n C20 O19 P33 sing 330 n n C20 H201 P33 sing 331 n n C20 H202 P33 sing 332 n n O19 C18 P33 sing 333 n n C18 C17 P33 sing 334 n n C18 H181 P33 sing 335 n n C18 H182 P33 sing 336 n n C17 O16 P33 sing 337 n n C17 H171 P33 sing 338 n n C17 H172 P33 sing 339 n n O16 C15 P33 sing 340 n n C15 C14 P33 sing 341 n n C15 H151 P33 sing 342 n n C15 H152 P33 sing 343 n n C14 O13 P33 sing 344 n n C14 H141 P33 sing 345 n n C14 H142 P33 sing 346 n n O13 C12 P33 sing 347 n n C12 C11 P33 sing 348 n n C12 H121 P33 sing 349 n n C12 H122 P33 sing 350 n n C11 O10 P33 sing 351 n n C11 H111 P33 sing 352 n n C11 H112 P33 sing 353 n n O10 C9 P33 sing 354 n n C9 C8 P33 sing 355 n n C9 H91 P33 sing 356 n n C9 H92 P33 sing 357 n n C8 O7 P33 sing 358 n n C8 H81 P33 sing 359 n n C8 H82 P33 sing 360 n n O7 C6 P33 sing 361 n n C6 C5 P33 sing 362 n n C6 H61 P33 sing 363 n n C6 H62 P33 sing 364 n n C5 O4 P33 sing 365 n n C5 H51 P33 sing 366 n n C5 H52 P33 sing 367 n n O4 C3 P33 sing 368 n n C3 C2 P33 sing 369 n n C3 H31 P33 sing 370 n n C3 H32 P33 sing 371 n n C2 O1 P33 sing 372 n n C2 H21 P33 sing 373 n n C2 H22A P33 sing 374 n n O1 HO1 P33 sing 375 n n # _atom_sites.entry_id 6H7D _atom_sites.fract_transf_matrix[1][1] 0.01935 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006803 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010815 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015868 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BGC A 1 600 600 BGC BGC . C 3 P33 A 1 601 601 P33 PEG . D 4 PO4 A 1 602 602 PO4 PO4 . E 5 OLC A 1 603 603 OLC OLC . F 5 OLC A 1 604 604 OLC OLC . G 5 OLC A 1 605 605 OLC OLC . H 5 OLC A 1 606 606 OLC OLC . I 5 OLC A 1 607 607 OLC OLC . J 6 HOH A 1 701 716 HOH HOH . J 6 HOH A 2 702 708 HOH HOH . J 6 HOH A 3 703 718 HOH HOH . J 6 HOH A 4 704 728 HOH HOH . J 6 HOH A 5 705 715 HOH HOH . J 6 HOH A 6 706 703 HOH HOH . J 6 HOH A 7 707 701 HOH HOH . J 6 HOH A 8 708 720 HOH HOH . J 6 HOH A 9 709 707 HOH HOH . J 6 HOH A 10 710 712 HOH HOH . J 6 HOH A 11 711 726 HOH HOH . J 6 HOH A 12 712 711 HOH HOH . J 6 HOH A 13 713 705 HOH HOH . J 6 HOH A 14 714 723 HOH HOH . J 6 HOH A 15 715 717 HOH HOH . J 6 HOH A 16 716 710 HOH HOH . J 6 HOH A 17 717 702 HOH HOH . J 6 HOH A 18 718 724 HOH HOH . J 6 HOH A 19 719 719 HOH HOH . J 6 HOH A 20 720 731 HOH HOH . J 6 HOH A 21 721 714 HOH HOH . J 6 HOH A 22 722 727 HOH HOH . J 6 HOH A 23 723 709 HOH HOH . J 6 HOH A 24 724 722 HOH HOH . J 6 HOH A 25 725 704 HOH HOH . J 6 HOH A 26 726 713 HOH HOH . J 6 HOH A 27 727 706 HOH HOH . J 6 HOH A 28 728 721 HOH HOH . J 6 HOH A 29 729 729 HOH HOH . J 6 HOH A 30 730 725 HOH HOH . J 6 HOH A 31 731 730 HOH HOH . J 6 HOH A 32 732 733 HOH HOH . J 6 HOH A 33 733 732 HOH HOH . J 6 HOH A 34 734 734 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O22 P33 . . . C 3 -18.668 -17.419 9.855 1 51.18 ? O22 P33 601 A 1 HETATM 2 C C21 P33 . . . C 3 -17.301 -17.157 10.098 1 54.61 ? C21 P33 601 A 1 HETATM 3 C C20 P33 . . . C 3 -16.915 -15.764 9.576 1 62.26 ? C20 P33 601 A 1 HETATM 4 O O19 P33 . . . C 3 -16.072 -15.115 10.499 1 69.34 ? O19 P33 601 A 1 HETATM 5 C C18 P33 . . . C 3 -15.838 -13.747 10.267 1 67.51 ? C18 P33 601 A 1 HETATM 6 C C17 P33 . . . C 3 -14.956 -13.162 11.39 1 62.9 ? C17 P33 601 A 1 HETATM 7 O O16 P33 . . . C 3 -14.559 -11.842 11.054 1 53.73 ? O16 P33 601 A 1 HETATM 8 C C15 P33 . . . C 3 -13.259 -11.478 11.432 1 45.76 ? C15 P33 601 A 1 HETATM 9 C C14 P33 . . . C 3 -12.752 -10.339 10.54 1 42.86 ? C14 P33 601 A 1 HETATM 10 O O13 P33 . . . C 3 -13.04 -10.606 9.189 1 46.38 ? O13 P33 601 A 1 HETATM 11 C C12 P33 . . . C 3 -12.682 -9.545 8.332 1 39.58 ? C12 P33 601 A 1 HETATM 12 C C11 P33 . . . C 3 -12.619 -10.021 6.876 1 38.66 ? C11 P33 601 A 1 HETATM 13 O O10 P33 . . . C 3 -13.578 -9.416 6.022 1 42.24 ? O10 P33 601 A 1 HETATM 14 C C9 P33 . . . C 3 -14.847 -9.215 6.581 1 46.97 ? C9 P33 601 A 1 HETATM 15 C C8 P33 . . . C 3 -15.889 -8.958 5.486 1 43.16 ? C8 P33 601 A 1 HETATM 16 O O7 P33 . . . C 3 -17.135 -9.365 6.005 1 48.15 ? O7 P33 601 A 1 HETATM 17 C C6 P33 . . . C 3 -17.332 -8.969 7.336 1 58.99 ? C6 P33 601 A 1 HETATM 18 C C5 P33 . . . C 3 -17.874 -10.099 8.218 1 70.27 ? C5 P33 601 A 1 HETATM 19 O O4 P33 . . . C 3 -17.794 -9.651 9.554 1 73.97 ? O4 P33 601 A 1 HETATM 20 C C3 P33 . . . C 3 -16.486 -9.401 10.004 1 69.26 ? C3 P33 601 A 1 HETATM 21 C C2 P33 . . . C 3 -16.394 -8.02 10.652 1 56.45 ? C2 P33 601 A 1 HETATM 22 O O1 P33 . . . C 3 -15.36 -7.343 9.981 1 59.22 ? O1 P33 601 A 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 22 #