data_6H7D # _model_server_result.job_id h1nOTAO8cLW-34MdgbkZWg _model_server_result.datetime_utc '2024-11-23 23:29:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6h7d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":603}' # _entry.id 6H7D # _exptl.entry_id 6H7D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.37 _cell.angle_gamma 90 _cell.entry_id 6H7D _cell.length_a 51.68 _cell.length_b 92.46 _cell.length_c 66.8 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6H7D _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 78 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 77 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 450 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 449 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.025 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 261 n n C10 C9 OLC doub 262 n n C10 C11 OLC sing 263 n n C9 C8 OLC sing 264 n n C17 C16 OLC sing 265 z n C11 C12 OLC sing 266 n n C8 C7 OLC sing 267 n n C24 C22 OLC sing 268 n n C24 O25 OLC sing 269 n n C16 C15 OLC sing 270 n n C12 C13 OLC sing 271 n n C7 C6 OLC sing 272 n n C15 C14 OLC sing 273 n n C13 C14 OLC sing 274 n n C6 C5 OLC sing 275 n n C5 C4 OLC sing 276 n n C4 C3 OLC sing 277 n n C3 C2 OLC sing 278 n n C2 C1 OLC sing 279 n n C21 C22 OLC sing 280 n n C21 O20 OLC sing 281 n n C1 O19 OLC doub 282 n n C1 O20 OLC sing 283 n n C22 O23 OLC sing 284 n n C18 H18 OLC sing 285 n n C18 H18A OLC sing 286 n n C18 H18B OLC sing 287 n n C10 H10 OLC sing 288 n n C9 H9 OLC sing 289 n n C17 H17 OLC sing 290 n n C17 H17A OLC sing 291 n n C11 H11 OLC sing 292 n n C11 H11A OLC sing 293 n n C8 H8 OLC sing 294 n n C8 H8A OLC sing 295 n n C24 H24 OLC sing 296 n n C24 H24A OLC sing 297 n n C16 H16 OLC sing 298 n n C16 H16A OLC sing 299 n n C12 H12 OLC sing 300 n n C12 H12A OLC sing 301 n n C7 H7 OLC sing 302 n n C7 H7A OLC sing 303 n n C15 H15 OLC sing 304 n n C15 H15A OLC sing 305 n n C13 H13 OLC sing 306 n n C13 H13A OLC sing 307 n n C6 H6 OLC sing 308 n n C6 H6A OLC sing 309 n n C14 H14 OLC sing 310 n n C14 H14A OLC sing 311 n n C5 H5 OLC sing 312 n n C5 H5A OLC sing 313 n n C4 H4 OLC sing 314 n n C4 H4A OLC sing 315 n n C3 H3 OLC sing 316 n n C3 H3A OLC sing 317 n n C2 H2 OLC sing 318 n n C2 H2A OLC sing 319 n n C21 H21 OLC sing 320 n n C21 H21A OLC sing 321 n n C22 H22 OLC sing 322 n n O25 HO25 OLC sing 323 n n O23 HO23 OLC sing 324 n n # _atom_sites.entry_id 6H7D _atom_sites.fract_transf_matrix[1][1] 0.01935 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006803 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010815 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015868 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BGC A 1 600 600 BGC BGC . C 3 P33 A 1 601 601 P33 PEG . D 4 PO4 A 1 602 602 PO4 PO4 . E 5 OLC A 1 603 603 OLC OLC . F 5 OLC A 1 604 604 OLC OLC . G 5 OLC A 1 605 605 OLC OLC . H 5 OLC A 1 606 606 OLC OLC . I 5 OLC A 1 607 607 OLC OLC . J 6 HOH A 1 701 716 HOH HOH . J 6 HOH A 2 702 708 HOH HOH . J 6 HOH A 3 703 718 HOH HOH . J 6 HOH A 4 704 728 HOH HOH . J 6 HOH A 5 705 715 HOH HOH . J 6 HOH A 6 706 703 HOH HOH . J 6 HOH A 7 707 701 HOH HOH . J 6 HOH A 8 708 720 HOH HOH . J 6 HOH A 9 709 707 HOH HOH . J 6 HOH A 10 710 712 HOH HOH . J 6 HOH A 11 711 726 HOH HOH . J 6 HOH A 12 712 711 HOH HOH . J 6 HOH A 13 713 705 HOH HOH . J 6 HOH A 14 714 723 HOH HOH . J 6 HOH A 15 715 717 HOH HOH . J 6 HOH A 16 716 710 HOH HOH . J 6 HOH A 17 717 702 HOH HOH . J 6 HOH A 18 718 724 HOH HOH . J 6 HOH A 19 719 719 HOH HOH . J 6 HOH A 20 720 731 HOH HOH . J 6 HOH A 21 721 714 HOH HOH . J 6 HOH A 22 722 727 HOH HOH . J 6 HOH A 23 723 709 HOH HOH . J 6 HOH A 24 724 722 HOH HOH . J 6 HOH A 25 725 704 HOH HOH . J 6 HOH A 26 726 713 HOH HOH . J 6 HOH A 27 727 706 HOH HOH . J 6 HOH A 28 728 721 HOH HOH . J 6 HOH A 29 729 729 HOH HOH . J 6 HOH A 30 730 725 HOH HOH . J 6 HOH A 31 731 730 HOH HOH . J 6 HOH A 32 732 733 HOH HOH . J 6 HOH A 33 733 732 HOH HOH . J 6 HOH A 34 734 734 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . E 5 -9.885 -26.666 -5.279 1 77 ? C18 OLC 603 A 1 HETATM 2 C C10 OLC . . . E 5 -6.534 -23.333 1.046 1 88.44 ? C10 OLC 603 A 1 HETATM 3 C C9 OLC . . . E 5 -6.506 -23.149 2.359 1 84.85 ? C9 OLC 603 A 1 HETATM 4 C C17 OLC . . . E 5 -10.272 -25.305 -5.866 1 73.11 ? C17 OLC 603 A 1 HETATM 5 C C11 OLC . . . E 5 -7.094 -22.278 0.087 1 88.63 ? C11 OLC 603 A 1 HETATM 6 C C8 OLC . . . E 5 -7.034 -21.873 3.024 1 76.09 ? C8 OLC 603 A 1 HETATM 7 C C24 OLC . . . E 5 -8.777 -23.979 16.029 1 86.5 ? C24 OLC 603 A 1 HETATM 8 C C16 OLC . . . E 5 -9.41 -24.215 -5.244 1 73.58 ? C16 OLC 603 A 1 HETATM 9 C C12 OLC . . . E 5 -6.855 -22.695 -1.365 1 83.3 ? C12 OLC 603 A 1 HETATM 10 C C7 OLC . . . E 5 -6.562 -21.807 4.478 1 68.13 ? C7 OLC 603 A 1 HETATM 11 C C15 OLC . . . E 5 -9.338 -24.413 -3.728 1 79.13 ? C15 OLC 603 A 1 HETATM 12 C C13 OLC . . . E 5 -7.913 -23.717 -1.781 1 80.51 ? C13 OLC 603 A 1 HETATM 13 C C6 OLC . . . E 5 -7.073 -23.048 5.198 1 61.05 ? C6 OLC 603 A 1 HETATM 14 C C14 OLC . . . E 5 -8.484 -23.295 -3.133 1 80.18 ? C14 OLC 603 A 1 HETATM 15 C C5 OLC . . . E 5 -6.464 -23.146 6.593 1 61.5 ? C5 OLC 603 A 1 HETATM 16 C C4 OLC . . . E 5 -7.615 -23.205 7.592 1 60.85 ? C4 OLC 603 A 1 HETATM 17 C C3 OLC . . . E 5 -7.121 -23.381 9.026 1 61.29 ? C3 OLC 603 A 1 HETATM 18 C C2 OLC . . . E 5 -8.311 -23.13 9.952 1 65.15 ? C2 OLC 603 A 1 HETATM 19 C C21 OLC . . . E 5 -8.194 -23.113 13.76 1 77.6 ? C21 OLC 603 A 1 HETATM 20 C C1 OLC . . . E 5 -7.842 -23.167 11.403 1 75.26 ? C1 OLC 603 A 1 HETATM 21 C C22 OLC . . . E 5 -9.259 -23.127 14.857 1 81.27 ? C22 OLC 603 A 1 HETATM 22 O O19 OLC . . . E 5 -6.675 -23.253 11.598 1 79.84 ? O19 OLC 603 A 1 HETATM 23 O O25 OLC . . . E 5 -7.892 -23.229 16.82 1 89.12 ? O25 OLC 603 A 1 HETATM 24 O O23 OLC . . . E 5 -9.462 -21.826 15.324 1 84.94 ? O23 OLC 603 A 1 HETATM 25 O O20 OLC . . . E 5 -8.764 -23.105 12.476 1 76.98 ? O20 OLC 603 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #