data_6H7L # _model_server_result.job_id 0dDKz0gzq_NPPkL4BGyNsg _model_server_result.datetime_utc '2024-11-23 01:03:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6h7l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":405}' # _entry.id 6H7L # _exptl.entry_id 6H7L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 301.38 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DOBUTAMINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6H7L _cell.length_a 116.513 _cell.length_b 119.699 _cell.length_c 129.156 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6H7L _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I,J,K,L,M,N,T,U 1 1 D,E,F,O,P,Q,R,S,V,W 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 M N N ? 6 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 76 A CYS 114 1_555 B SG CYS 161 A CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf2 B SG CYS 154 A CYS 192 1_555 B SG CYS 160 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf3 C SG CYS 23 C CYS 22 1_555 C SG CYS 96 C CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 E SG CYS 76 B CYS 114 1_555 E SG CYS 161 B CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 E SG CYS 154 B CYS 192 1_555 E SG CYS 160 B CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf6 F SG CYS 23 D CYS 22 1_555 F SG CYS 96 D CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc1 B O CYS 154 A CYS 192 1_555 H NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? metalc ? metalc2 B O ASP 157 A ASP 195 1_555 H NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc3 B O CYS 160 A CYS 198 1_555 H NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc4 E O CYS 154 B CYS 192 1_555 O NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? metalc ? metalc5 E O ASP 157 B ASP 195 1_555 O NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc6 E O CYS 160 B CYS 198 1_555 O NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? # _chem_comp.formula 'C18 H23 N O3' _chem_comp.formula_weight 301.38 _chem_comp.id Y00 _chem_comp.mon_nstd_flag . _chem_comp.name DOBUTAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 C16 Y00 sing 438 n n C16 C15 Y00 sing 439 n y C16 C17 Y00 doub 440 n y C15 C14 Y00 doub 441 n y C14 C13 Y00 sing 442 n y C17 C18 Y00 sing 443 n y C18 C13 Y00 doub 444 n y C13 C12 Y00 sing 445 n n C12 C11 Y00 sing 446 n n C11 C9 Y00 sing 447 n n C9 C10 Y00 sing 448 n n C9 N1 Y00 sing 449 n n N1 C8 Y00 sing 450 n n C8 C1 Y00 sing 451 n n C1 C2 Y00 sing 452 n n C2 C7 Y00 sing 453 n y C2 C3 Y00 doub 454 n y C7 C6 Y00 doub 455 n y C6 O1 Y00 sing 456 n n C6 C5 Y00 sing 457 n y C5 O2 Y00 sing 458 n n C5 C4 Y00 doub 459 n y C4 C3 Y00 sing 460 n y O3 H3 Y00 sing 461 n n C15 H15 Y00 sing 462 n n C17 H17 Y00 sing 463 n n C14 H14 Y00 sing 464 n n C18 H18 Y00 sing 465 n n C12 H121 Y00 sing 466 n n C12 H122 Y00 sing 467 n n C11 H111 Y00 sing 468 n n C11 H112 Y00 sing 469 n n C9 H9 Y00 sing 470 n n C10 H101 Y00 sing 471 n n C10 H102 Y00 sing 472 n n C10 H103 Y00 sing 473 n n N1 H1 Y00 sing 474 n n C8 H81C Y00 sing 475 n n C8 H82C Y00 sing 476 n n C1 H11C Y00 sing 477 n n C1 H12C Y00 sing 478 n n C7 H7 Y00 sing 479 n n C3 HA Y00 sing 480 n n O1 HB Y00 sing 481 n n O2 H2 Y00 sing 482 n n C4 H4 Y00 sing 483 n n # _atom_sites.entry_id 6H7L _atom_sites.fract_transf_matrix[1][1] 0.008583 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008354 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007743 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 2CV E 1 201 505 2CV 2CV . H 5 NA A 1 401 402 NA NA . I 4 2CV A 1 402 501 2CV 2CV . J 4 2CV A 1 403 502 2CV 2CV . K 4 2CV A 1 404 503 2CV 2CV . L 4 2CV A 1 405 504 2CV 2CV . M 6 Y00 A 1 406 601 Y00 Y00 . N 4 2CV A 1 407 502 2CV 2CV . O 5 NA B 1 401 402 NA NA . P 4 2CV B 1 402 501 2CV 2CV . Q 4 2CV B 1 403 503 2CV 2CV . R 4 2CV B 1 404 504 2CV 2CV . S 6 Y00 B 1 405 601 Y00 Y00 . T 7 HOH A 1 501 1 HOH HOH . T 7 HOH A 2 502 2 HOH HOH . T 7 HOH A 3 503 12 HOH HOH . T 7 HOH A 4 504 19 HOH HOH . T 7 HOH A 5 505 3 HOH HOH . T 7 HOH A 6 506 22 HOH HOH . U 7 HOH C 1 201 4 HOH HOH . U 7 HOH C 2 202 29 HOH HOH . U 7 HOH C 3 203 15 HOH HOH . U 7 HOH C 4 204 30 HOH HOH . U 7 HOH C 5 205 18 HOH HOH . V 7 HOH B 1 501 10 HOH HOH . W 7 HOH D 1 201 23 HOH HOH . W 7 HOH D 2 202 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3 Y00 . . . S 6 -31.481 40.558 -47.365 1 69.93 ? O3 Y00 405 B 1 HETATM 2 C C16 Y00 . . . S 6 -31.822 39.372 -47.929 1 67.85 ? C16 Y00 405 B 1 HETATM 3 C C15 Y00 . . . S 6 -30.949 38.764 -48.832 1 66.04 ? C15 Y00 405 B 1 HETATM 4 C C14 Y00 . . . S 6 -31.286 37.54 -49.406 1 66.19 ? C14 Y00 405 B 1 HETATM 5 C C17 Y00 . . . S 6 -33.038 38.768 -47.598 1 66.56 ? C17 Y00 405 B 1 HETATM 6 C C18 Y00 . . . S 6 -33.366 37.537 -48.171 1 66.64 ? C18 Y00 405 B 1 HETATM 7 C C13 Y00 . . . S 6 -32.497 36.925 -49.082 1 64.99 ? C13 Y00 405 B 1 HETATM 8 C C12 Y00 . . . S 6 -32.863 35.602 -49.721 1 60.92 ? C12 Y00 405 B 1 HETATM 9 C C11 Y00 . . . S 6 -32.65 34.476 -48.73 1 58.65 ? C11 Y00 405 B 1 HETATM 10 C C9 Y00 . . . S 6 -33.143 33.125 -49.223 1 58.95 ? C9 Y00 405 B 1 HETATM 11 C C10 Y00 . . . S 6 -32.662 32.044 -48.25 1 59.32 ? C10 Y00 405 B 1 HETATM 12 N N1 Y00 . . . S 6 -34.597 33.093 -49.394 1 61 ? N1 Y00 405 B 1 HETATM 13 C C8 Y00 . . . S 6 -35.238 32.073 -50.216 1 60.61 ? C8 Y00 405 B 1 HETATM 14 C C1 Y00 . . . S 6 -36.767 32.108 -50.208 1 60.5 ? C1 Y00 405 B 1 HETATM 15 C C2 Y00 . . . S 6 -37.335 30.8 -50.742 1 61.28 ? C2 Y00 405 B 1 HETATM 16 C C7 Y00 . . . S 6 -36.938 30.305 -51.991 1 61.2 ? C7 Y00 405 B 1 HETATM 17 C C6 Y00 . . . S 6 -37.442 29.099 -52.486 1 59.91 ? C6 Y00 405 B 1 HETATM 18 O O1 Y00 . . . S 6 -37.054 28.605 -53.699 1 60.72 ? O1 Y00 405 B 1 HETATM 19 C C5 Y00 . . . S 6 -38.421 28.355 -51.663 1 58.73 ? C5 Y00 405 B 1 HETATM 20 O O2 Y00 . . . S 6 -38.925 27.181 -52.121 1 56.42 ? O2 Y00 405 B 1 HETATM 21 C C4 Y00 . . . S 6 -38.807 28.88 -50.433 1 59.13 ? C4 Y00 405 B 1 HETATM 22 C C3 Y00 . . . S 6 -38.266 30.086 -49.979 1 60.9 ? C3 Y00 405 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 22 #