data_6H7M
#
_model_server_result.job_id            Z_Iue9nho_T4kCqSCFElVA 
_model_server_result.datetime_utc      '2024-11-23 01:17:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6h7m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":402}' 
#
_entry.id    6H7M 
#
_exptl.entry_id    6H7M 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              379.489 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            HEGA-10 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6H7M 
_cell.length_a            116.64 
_cell.length_b            121.5 
_cell.length_c            130.42 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6H7M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? trimeric 3 author_defined_assembly 1 
? trimeric 3 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,H,I,J,K,R,S 1 1 
D,E,F,L,M,N,O,P,Q,T 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 L N N 
? 4 M N N 
? 4 N N N 
? 4 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 76 A CYS 114 1_555 B SG CYS 161 A CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf2 B SG CYS 154 A CYS 192 1_555 B SG CYS 160 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf3 C SG CYS 23 C CYS 22 1_555 C SG CYS 96 C CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf4 E SG CYS 76 B CYS 114 1_555 E SG CYS 161 B CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf5 E SG CYS 154 B CYS 192 1_555 E SG CYS 160 B CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf6 F SG CYS 23 D CYS 22 1_555 F SG CYS 96 D CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
metalc ? metalc1 B O CYS 154 A CYS 192 1_555 K NA NA . A NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.75 ? 
metalc ? metalc2 B O ASP 157 A ASP 195 1_555 K NA NA . A NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? 
metalc ? metalc3 B O CYS 160 A CYS 198 1_555 K NA NA . A NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? 
metalc ? metalc4 K NA NA . A NA 505 1_555 R O HOH . A HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.612 ? 
metalc ? metalc5 E O CYS 154 B CYS 192 1_555 Q NA NA . B NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? 
metalc ? metalc6 E O ASP 157 B ASP 195 1_555 Q NA NA . B NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? 
metalc ? metalc7 E O CYS 160 B CYS 198 1_555 Q NA NA . B NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? 
#
_chem_comp.formula           'C18 H37 N O7' 
_chem_comp.formula_weight    379.489 
_chem_comp.id                2CV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              HEGA-10 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C9 C12 2CV sing 1 n n 
C9 C1 2CV sing 2 n n 
C12 C15 2CV sing 3 n n 
C15 C18 2CV sing 4 n n 
C18 C21 2CV sing 5 n n 
C21 C24 2CV sing 6 n n 
C24 C27 2CV sing 7 n n 
C27 C30 2CV sing 8 n n 
C30 N33 2CV sing 9 n n 
C30 O34 2CV doub 10 n n 
N33 C35 2CV sing 11 n n 
N33 C36 2CV sing 12 n n 
C35 C60 2CV sing 13 n n 
C36 C37 2CV sing 14 n n 
C37 C40 2CV sing 15 n n 
C37 O47 2CV sing 16 n n 
C40 C41 2CV sing 17 n n 
C40 O49 2CV sing 18 n n 
C41 C42 2CV sing 19 n n 
C41 O51 2CV sing 20 n n 
C42 C43 2CV sing 21 n n 
C42 O53 2CV sing 22 n n 
C43 O44 2CV sing 23 n n 
C60 O63 2CV sing 24 n n 
C1 C0 2CV sing 25 n n 
C9 H91C 2CV sing 26 n n 
C9 H92C 2CV sing 27 n n 
C12 H121 2CV sing 28 n n 
C12 H122 2CV sing 29 n n 
C1 H11C 2CV sing 30 n n 
C1 H12C 2CV sing 31 n n 
C15 H151 2CV sing 32 n n 
C15 H152 2CV sing 33 n n 
C18 H181 2CV sing 34 n n 
C18 H182 2CV sing 35 n n 
C21 H211 2CV sing 36 n n 
C21 H212 2CV sing 37 n n 
C24 H241 2CV sing 38 n n 
C24 H242 2CV sing 39 n n 
C27 H271 2CV sing 40 n n 
C27 H272 2CV sing 41 n n 
C35 H351 2CV sing 42 n n 
C35 H352 2CV sing 43 n n 
C36 H361 2CV sing 44 n n 
C36 H362 2CV sing 45 n n 
C60 H601 2CV sing 46 n n 
C60 H602 2CV sing 47 n n 
C37 H37 2CV sing 48 n n 
C40 H40 2CV sing 49 n n 
O47 H47 2CV sing 50 n n 
C41 H41 2CV sing 51 n n 
O49 H49 2CV sing 52 n n 
C42 H42 2CV sing 53 n n 
O51 H51 2CV sing 54 n n 
C43 H431 2CV sing 55 n n 
C43 H432 2CV sing 56 n n 
O53 H53 2CV sing 57 n n 
O44 H44 2CV sing 58 n n 
O63 H63 2CV sing 59 n n 
C0 H01C 2CV sing 60 n n 
C0 H02C 2CV sing 61 n n 
C0 H03C 2CV sing 62 n n 
#
_atom_sites.entry_id                     6H7M 
_atom_sites.fract_transf_matrix[1][1]    0.008573 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00823 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007668 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 2CV A 1 501 501 2CV 2CV . 
H 4 2CV A 1 502 502 2CV 2CV . 
I 4 2CV A 1 503 505 2CV 2CV . 
J 5 68H A 1 504 401 68H 68H . 
K 6 NA A 1 505 601 NA NA . 
L 4 2CV B 1 401 503 2CV 2CV . 
M 4 2CV B 1 402 504 2CV 2CV . 
N 4 2CV B 1 403 501 2CV 2CV . 
O 4 2CV B 1 404 502 2CV 2CV . 
P 5 68H B 1 405 401 68H 68H . 
Q 6 NA B 1 406 601 NA NA . 
R 7 HOH A 1 601 10 HOH HOH . 
R 7 HOH A 2 602 2 HOH HOH . 
R 7 HOH A 3 603 1 HOH HOH . 
R 7 HOH A 4 604 16 HOH HOH . 
R 7 HOH A 5 605 19 HOH HOH . 
R 7 HOH A 6 606 15 HOH HOH . 
S 7 HOH C 1 201 8 HOH HOH . 
S 7 HOH C 2 202 14 HOH HOH . 
S 7 HOH C 3 203 17 HOH HOH . 
T 7 HOH B 1 501 3 HOH HOH . 
T 7 HOH B 2 502 6 HOH HOH . 
T 7 HOH B 3 503 13 HOH HOH . 
T 7 HOH B 4 504 12 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C9 2CV . . . M 4 -20.211 -30.824 33.202 1 56.64 ? C9 2CV 402 B 1 
HETATM 2 C C12 2CV . . . M 4 -19.369 -30.777 31.92 1 56.9 ? C12 2CV 402 B 1 
HETATM 3 C C15 2CV . . . M 4 -17.853 -30.791 32.177 1 55.21 ? C15 2CV 402 B 1 
HETATM 4 C C18 2CV . . . M 4 -17.363 -32.194 32.548 1 55.64 ? C18 2CV 402 B 1 
HETATM 5 C C21 2CV . . . M 4 -17.048 -33.072 31.346 1 57.02 ? C21 2CV 402 B 1 
HETATM 6 C C24 2CV . . . M 4 -15.785 -32.633 30.629 1 60.89 ? C24 2CV 402 B 1 
HETATM 7 C C27 2CV . . . M 4 -14.591 -32.594 31.575 1 64.7 ? C27 2CV 402 B 1 
HETATM 8 C C30 2CV . . . M 4 -13.362 -33.059 30.828 1 72.85 ? C30 2CV 402 B 1 
HETATM 9 N N33 2CV . . . M 4 -13.11 -34.383 30.647 1 77.62 ? N33 2CV 402 B 1 
HETATM 10 O O34 2CV . . . M 4 -12.654 -32.163 30.418 1 77.48 ? O34 2CV 402 B 1 
HETATM 11 C C35 2CV . . . M 4 -14.078 -35.444 30.986 1 91.93 ? C35 2CV 402 B 1 
HETATM 12 C C36 2CV . . . M 4 -11.888 -35.043 30.124 1 67.58 ? C36 2CV 402 B 1 
HETATM 13 C C37 2CV . . . M 4 -10.68 -34.248 29.643 1 63.57 ? C37 2CV 402 B 1 
HETATM 14 C C40 2CV . . . M 4 -9.428 -35.119 29.858 1 63.15 ? C40 2CV 402 B 1 
HETATM 15 C C41 2CV . . . M 4 -8.072 -34.531 29.425 1 66.17 ? C41 2CV 402 B 1 
HETATM 16 C C42 2CV . . . M 4 -6.825 -35.253 30.002 1 64.61 ? C42 2CV 402 B 1 
HETATM 17 C C43 2CV . . . M 4 -5.544 -34.403 30.152 1 64.61 ? C43 2CV 402 B 1 
HETATM 18 O O44 2CV . . . M 4 -4.751 -34.804 31.285 1 63.34 ? O44 2CV 402 B 1 
HETATM 19 O O47 2CV . . . M 4 -10.526 -33.047 30.388 1 63.8 ? O47 2CV 402 B 1 
HETATM 20 O O49 2CV . . . M 4 -9.665 -36.34 29.175 1 58.36 ? O49 2CV 402 B 1 
HETATM 21 O O51 2CV . . . M 4 -8.076 -33.154 29.823 1 77.22 ? O51 2CV 402 B 1 
HETATM 22 O O53 2CV . . . M 4 -6.466 -36.333 29.138 1 60.42 ? O53 2CV 402 B 1 
HETATM 23 C C60 2CV . . . M 4 -13.586 -36.182 32.248 1 105.83 ? C60 2CV 402 B 1 
HETATM 24 O O63 2CV . . . M 4 -12.897 -37.408 31.92 1 120.83 ? O63 2CV 402 B 1 
HETATM 25 C C1 2CV . . . M 4 -21.703 -31.066 32.964 1 57.11 ? C1 2CV 402 B 1 
HETATM 26 C C0 2CV . . . M 4 -22.341 -31.936 34.036 1 54.81 ? C0 2CV 402 B 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    182 
_model_server_stats.query_time_ms           388 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           26 
#