data_6H7M # _model_server_result.job_id iU8fL2pjhBkekSYmZCsSPg _model_server_result.datetime_utc '2024-11-01 11:20:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6h7m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":403}' # _entry.id 6H7M # _exptl.entry_id 6H7M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 379.489 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description HEGA-10 _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6H7M _cell.length_a 116.64 _cell.length_b 121.5 _cell.length_c 130.42 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6H7M _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I,J,K,R,S 1 1 D,E,F,L,M,N,O,P,Q,T 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 76 A CYS 114 1_555 B SG CYS 161 A CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf2 B SG CYS 154 A CYS 192 1_555 B SG CYS 160 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 C SG CYS 23 C CYS 22 1_555 C SG CYS 96 C CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 E SG CYS 76 B CYS 114 1_555 E SG CYS 161 B CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf5 E SG CYS 154 B CYS 192 1_555 E SG CYS 160 B CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 F SG CYS 23 D CYS 22 1_555 F SG CYS 96 D CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc1 B O CYS 154 A CYS 192 1_555 K NA NA . A NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.75 ? metalc ? metalc2 B O ASP 157 A ASP 195 1_555 K NA NA . A NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? metalc ? metalc3 B O CYS 160 A CYS 198 1_555 K NA NA . A NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? metalc ? metalc4 K NA NA . A NA 505 1_555 R O HOH . A HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.612 ? metalc ? metalc5 E O CYS 154 B CYS 192 1_555 Q NA NA . B NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? metalc ? metalc6 E O ASP 157 B ASP 195 1_555 Q NA NA . B NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc7 E O CYS 160 B CYS 198 1_555 Q NA NA . B NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? # _chem_comp.formula 'C18 H37 N O7' _chem_comp.formula_weight 379.489 _chem_comp.id 2CV _chem_comp.mon_nstd_flag . _chem_comp.name HEGA-10 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 C12 2CV sing 1 n n C9 C1 2CV sing 2 n n C12 C15 2CV sing 3 n n C15 C18 2CV sing 4 n n C18 C21 2CV sing 5 n n C21 C24 2CV sing 6 n n C24 C27 2CV sing 7 n n C27 C30 2CV sing 8 n n C30 N33 2CV sing 9 n n C30 O34 2CV doub 10 n n N33 C35 2CV sing 11 n n N33 C36 2CV sing 12 n n C35 C60 2CV sing 13 n n C36 C37 2CV sing 14 n n C37 C40 2CV sing 15 n n C37 O47 2CV sing 16 n n C40 C41 2CV sing 17 n n C40 O49 2CV sing 18 n n C41 C42 2CV sing 19 n n C41 O51 2CV sing 20 n n C42 C43 2CV sing 21 n n C42 O53 2CV sing 22 n n C43 O44 2CV sing 23 n n C60 O63 2CV sing 24 n n C1 C0 2CV sing 25 n n C9 H91C 2CV sing 26 n n C9 H92C 2CV sing 27 n n C12 H121 2CV sing 28 n n C12 H122 2CV sing 29 n n C1 H11C 2CV sing 30 n n C1 H12C 2CV sing 31 n n C15 H151 2CV sing 32 n n C15 H152 2CV sing 33 n n C18 H181 2CV sing 34 n n C18 H182 2CV sing 35 n n C21 H211 2CV sing 36 n n C21 H212 2CV sing 37 n n C24 H241 2CV sing 38 n n C24 H242 2CV sing 39 n n C27 H271 2CV sing 40 n n C27 H272 2CV sing 41 n n C35 H351 2CV sing 42 n n C35 H352 2CV sing 43 n n C36 H361 2CV sing 44 n n C36 H362 2CV sing 45 n n C60 H601 2CV sing 46 n n C60 H602 2CV sing 47 n n C37 H37 2CV sing 48 n n C40 H40 2CV sing 49 n n O47 H47 2CV sing 50 n n C41 H41 2CV sing 51 n n O49 H49 2CV sing 52 n n C42 H42 2CV sing 53 n n O51 H51 2CV sing 54 n n C43 H431 2CV sing 55 n n C43 H432 2CV sing 56 n n O53 H53 2CV sing 57 n n O44 H44 2CV sing 58 n n O63 H63 2CV sing 59 n n C0 H01C 2CV sing 60 n n C0 H02C 2CV sing 61 n n C0 H03C 2CV sing 62 n n # _atom_sites.entry_id 6H7M _atom_sites.fract_transf_matrix[1][1] 0.008573 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00823 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007668 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 2CV A 1 501 501 2CV 2CV . H 4 2CV A 1 502 502 2CV 2CV . I 4 2CV A 1 503 505 2CV 2CV . J 5 68H A 1 504 401 68H 68H . K 6 NA A 1 505 601 NA NA . L 4 2CV B 1 401 503 2CV 2CV . M 4 2CV B 1 402 504 2CV 2CV . N 4 2CV B 1 403 501 2CV 2CV . O 4 2CV B 1 404 502 2CV 2CV . P 5 68H B 1 405 401 68H 68H . Q 6 NA B 1 406 601 NA NA . R 7 HOH A 1 601 10 HOH HOH . R 7 HOH A 2 602 2 HOH HOH . R 7 HOH A 3 603 1 HOH HOH . R 7 HOH A 4 604 16 HOH HOH . R 7 HOH A 5 605 19 HOH HOH . R 7 HOH A 6 606 15 HOH HOH . S 7 HOH C 1 201 8 HOH HOH . S 7 HOH C 2 202 14 HOH HOH . S 7 HOH C 3 203 17 HOH HOH . T 7 HOH B 1 501 3 HOH HOH . T 7 HOH B 2 502 6 HOH HOH . T 7 HOH B 3 503 13 HOH HOH . T 7 HOH B 4 504 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C9 2CV . . . N 4 -5.167 -26.514 61.676 1 84.63 ? C9 2CV 403 B 1 HETATM 2 C C12 2CV . . . N 4 -4.023 -25.567 61.308 1 84.79 ? C12 2CV 403 B 1 HETATM 3 C C15 2CV . . . N 4 -4.125 -25.018 59.886 1 85.18 ? C15 2CV 403 B 1 HETATM 4 C C18 2CV . . . N 4 -2.817 -24.338 59.476 1 85.21 ? C18 2CV 403 B 1 HETATM 5 C C21 2CV . . . N 4 -3.051 -23.018 58.746 1 84.35 ? C21 2CV 403 B 1 HETATM 6 C C24 2CV . . . N 4 -1.883 -22.057 58.905 1 84.96 ? C24 2CV 403 B 1 HETATM 7 C C27 2CV . . . N 4 -1.267 -21.768 57.55 1 89.05 ? C27 2CV 403 B 1 HETATM 8 C C30 2CV . . . N 4 -0.117 -20.809 57.733 1 92.99 ? C30 2CV 403 B 1 HETATM 9 N N33 2CV . . . N 4 1.096 -21.233 58.136 1 100.93 ? N33 2CV 403 B 1 HETATM 10 O O34 2CV . . . N 4 -0.357 -19.634 57.514 1 91.06 ? O34 2CV 403 B 1 HETATM 11 C C35 2CV . . . N 4 1.477 -22.646 58.328 1 99.55 ? C35 2CV 403 B 1 HETATM 12 C C36 2CV . . . N 4 2.154 -20.259 58.472 1 108.37 ? C36 2CV 403 B 1 HETATM 13 C C37 2CV . . . N 4 2.844 -19.705 57.21 1 113.14 ? C37 2CV 403 B 1 HETATM 14 C C40 2CV . . . N 4 4.015 -18.778 57.55 1 118.42 ? C40 2CV 403 B 1 HETATM 15 C C41 2CV . . . N 4 4.728 -18.292 56.28 1 123.45 ? C41 2CV 403 B 1 HETATM 16 C C42 2CV . . . N 4 6.167 -17.776 56.492 1 131.69 ? C42 2CV 403 B 1 HETATM 17 C C43 2CV . . . N 4 6.344 -16.701 57.574 1 136.7 ? C43 2CV 403 B 1 HETATM 18 O O44 2CV . . . N 4 5.839 -15.431 57.139 1 145.37 ? O44 2CV 403 B 1 HETATM 19 O O47 2CV . . . N 4 1.925 -18.97 56.389 1 114.36 ? O47 2CV 403 B 1 HETATM 20 O O49 2CV . . . N 4 4.936 -19.457 58.415 1 122.22 ? O49 2CV 403 B 1 HETATM 21 O O51 2CV . . . N 4 3.914 -17.278 55.676 1 118.67 ? O51 2CV 403 B 1 HETATM 22 O O53 2CV . . . N 4 6.671 -17.256 55.25 1 132.58 ? O53 2CV 403 B 1 HETATM 23 C C60 2CV . . . N 4 2.221 -23.133 57.086 1 101.42 ? C60 2CV 403 B 1 HETATM 24 O O63 2CV . . . N 4 3.575 -23.452 57.44 1 98.32 ? O63 2CV 403 B 1 HETATM 25 C C1 2CV . . . N 4 -6.406 -25.81 62.244 1 83.2 ? C1 2CV 403 B 1 HETATM 26 C C0 2CV . . . N 4 -7.158 -26.721 63.197 1 79.38 ? C0 2CV 403 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 26 #