data_6H7M # _model_server_result.job_id 22sAepExzV3r85v5DXscIg _model_server_result.datetime_utc '2024-11-01 11:27:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6h7m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":406}' # _entry.id 6H7M # _exptl.entry_id 6H7M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6H7M _cell.length_a 116.64 _cell.length_b 121.5 _cell.length_c 130.42 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6H7M _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I,J,K,R,S 1 1 D,E,F,L,M,N,O,P,Q,T 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 K N N ? 6 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 76 A CYS 114 1_555 B SG CYS 161 A CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf2 B SG CYS 154 A CYS 192 1_555 B SG CYS 160 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 C SG CYS 23 C CYS 22 1_555 C SG CYS 96 C CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 E SG CYS 76 B CYS 114 1_555 E SG CYS 161 B CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf5 E SG CYS 154 B CYS 192 1_555 E SG CYS 160 B CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 F SG CYS 23 D CYS 22 1_555 F SG CYS 96 D CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc1 B O CYS 154 A CYS 192 1_555 K NA NA . A NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.75 ? metalc ? metalc2 B O ASP 157 A ASP 195 1_555 K NA NA . A NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? metalc ? metalc3 B O CYS 160 A CYS 198 1_555 K NA NA . A NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? metalc ? metalc4 K NA NA . A NA 505 1_555 R O HOH . A HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.612 ? metalc ? metalc5 E O CYS 154 B CYS 192 1_555 Q NA NA . B NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? metalc ? metalc6 E O ASP 157 B ASP 195 1_555 Q NA NA . B NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc7 E O CYS 160 B CYS 198 1_555 Q NA NA . B NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6H7M _atom_sites.fract_transf_matrix[1][1] 0.008573 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00823 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007668 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 2CV A 1 501 501 2CV 2CV . H 4 2CV A 1 502 502 2CV 2CV . I 4 2CV A 1 503 505 2CV 2CV . J 5 68H A 1 504 401 68H 68H . K 6 NA A 1 505 601 NA NA . L 4 2CV B 1 401 503 2CV 2CV . M 4 2CV B 1 402 504 2CV 2CV . N 4 2CV B 1 403 501 2CV 2CV . O 4 2CV B 1 404 502 2CV 2CV . P 5 68H B 1 405 401 68H 68H . Q 6 NA B 1 406 601 NA NA . R 7 HOH A 1 601 10 HOH HOH . R 7 HOH A 2 602 2 HOH HOH . R 7 HOH A 3 603 1 HOH HOH . R 7 HOH A 4 604 16 HOH HOH . R 7 HOH A 5 605 19 HOH HOH . R 7 HOH A 6 606 15 HOH HOH . S 7 HOH C 1 201 8 HOH HOH . S 7 HOH C 2 202 14 HOH HOH . S 7 HOH C 3 203 17 HOH HOH . T 7 HOH B 1 501 3 HOH HOH . T 7 HOH B 2 502 6 HOH HOH . T 7 HOH B 3 503 13 HOH HOH . T 7 HOH B 4 504 12 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id Q _atom_site.label_entity_id 6 _atom_site.Cartn_x -37.525 _atom_site.Cartn_y -29.415 _atom_site.Cartn_z 49.128 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 56.72 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 406 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #