data_6H7N
#
_model_server_result.job_id            9E-G10XxU8G8fOeOw9et1A 
_model_server_result.datetime_utc      '2025-03-05 18:10:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6h7n 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":402}' 
#
_entry.id    6H7N 
#
_exptl.entry_id    6H7N 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              339.387 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ~{N}-[2-[[(2~{S})-2-oxidanyl-3-(4-oxidanylphenoxy)propyl]amino]ethyl]morpholine-4-carboxamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6H7N 
_cell.length_a            116.41 
_cell.length_b            121.533 
_cell.length_c            130.247 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6H7N 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? trimeric 3 author_defined_assembly 1 
? trimeric 3 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,G,H,I,J,K,P,Q,S 1 1 
C,D,F,L,M,N,O,R,T 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 76 A CYS 114 1_555 B SG CYS 161 A CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 B SG CYS 154 A CYS 192 1_555 B SG CYS 160 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf3 D SG CYS 76 B CYS 114 1_555 D SG CYS 161 B CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf4 D SG CYS 154 B CYS 192 1_555 D SG CYS 160 B CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf5 E SG CYS 23 C CYS 22 1_555 E SG CYS 96 C CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf6 F SG CYS 23 D CYS 22 1_555 F SG CYS 96 D CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
metalc ? metalc1 B O CYS 154 A CYS 192 1_555 H NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? 
metalc ? metalc2 B O ASP 157 A ASP 195 1_555 H NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? 
metalc ? metalc3 B O CYS 160 A CYS 198 1_555 H NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc4 H NA NA . A NA 402 1_555 Q O HOH . A HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
metalc ? metalc5 D O CYS 154 B CYS 192 1_555 N NA NA . B NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? 
metalc ? metalc6 D O ASP 157 B ASP 195 1_555 N NA NA . B NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? 
metalc ? metalc7 D O CYS 160 B CYS 198 1_555 N NA NA . B NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? 
#
_chem_comp.formula           'C16 H25 N3 O5' 
_chem_comp.formula_weight    339.387 
_chem_comp.id                FVK 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ~{N}-[2-[[(2~{S})-2-oxidanyl-3-(4-oxidanylphenoxy)propyl]amino]ethyl]morpholine-4-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C2 FVK sing 145 n n 
O1 C3 FVK sing 146 n n 
C2 C1 FVK sing 147 n n 
C3 C4 FVK sing 148 n n 
C1 N1 FVK sing 149 n n 
C4 N1 FVK sing 150 n n 
N1 C5 FVK sing 151 n n 
C5 O2 FVK doub 152 n n 
C5 N2 FVK sing 153 n n 
N2 C6 FVK sing 154 n n 
C6 C7 FVK sing 155 n n 
C7 N3 FVK sing 156 n n 
N3 C8 FVK sing 157 n n 
O5 C9 FVK sing 158 n n 
C8 C9 FVK sing 159 n n 
C9 C10 FVK sing 160 n n 
C10 O3 FVK sing 161 n n 
O3 C11 FVK sing 162 n n 
C11 C16 FVK doub 163 n y 
C11 C12 FVK sing 164 n y 
C16 C15 FVK sing 165 n y 
C12 C13 FVK doub 166 n y 
C15 C14 FVK doub 167 n y 
C13 C14 FVK sing 168 n y 
C14 O4 FVK sing 169 n n 
C4 H1 FVK sing 170 n n 
C4 H2 FVK sing 171 n n 
C6 H3 FVK sing 172 n n 
C6 H4 FVK sing 173 n n 
C3 H5 FVK sing 174 n n 
C3 H6 FVK sing 175 n n 
C1 H7 FVK sing 176 n n 
C1 H8 FVK sing 177 n n 
C2 H9 FVK sing 178 n n 
C2 H10 FVK sing 179 n n 
O5 H11 FVK sing 180 n n 
O4 H12 FVK sing 181 n n 
N2 H13 FVK sing 182 n n 
C7 H14 FVK sing 183 n n 
C7 H15 FVK sing 184 n n 
N3 H16 FVK sing 185 n n 
C8 H18 FVK sing 186 n n 
C8 H19 FVK sing 187 n n 
C9 H20 FVK sing 188 n n 
C10 H21 FVK sing 189 n n 
C10 H22 FVK sing 190 n n 
C12 H23 FVK sing 191 n n 
C13 H24 FVK sing 192 n n 
C15 H25 FVK sing 193 n n 
C16 H26 FVK sing 194 n n 
#
_atom_sites.entry_id                     6H7N 
_atom_sites.fract_transf_matrix[1][1]    0.00859 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008228 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007678 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 FVK A 1 401 401 FVK XAM . 
H 5 NA A 1 402 402 NA NA . 
I 6 2CV A 1 403 501 2CV 2CV . 
J 6 2CV A 1 404 502 2CV 2CV . 
K 6 2CV A 1 405 501 2CV 2CV . 
L 6 2CV B 1 401 503 2CV 2CV . 
M 4 FVK B 1 402 401 FVK XAM . 
N 5 NA B 1 403 402 NA NA . 
O 6 2CV B 1 404 502 2CV 2CV . 
P 7 HOH E 1 201 41 HOH HOH . 
Q 7 HOH A 1 501 29 HOH HOH . 
Q 7 HOH A 2 502 2 HOH HOH . 
Q 7 HOH A 3 503 18 HOH HOH . 
Q 7 HOH A 4 504 28 HOH HOH . 
Q 7 HOH A 5 505 42 HOH HOH . 
Q 7 HOH A 6 506 32 HOH HOH . 
Q 7 HOH A 7 507 31 HOH HOH . 
Q 7 HOH A 8 508 403 HOH HOH . 
Q 7 HOH A 9 509 8 HOH HOH . 
R 7 HOH B 1 501 25 HOH HOH . 
R 7 HOH B 2 502 34 HOH HOH . 
R 7 HOH B 3 503 30 HOH HOH . 
R 7 HOH B 4 504 5 HOH HOH . 
S 7 HOH C 1 201 20 HOH HOH . 
S 7 HOH C 2 202 38 HOH HOH . 
S 7 HOH C 3 203 33 HOH HOH . 
S 7 HOH C 4 204 21 HOH HOH . 
S 7 HOH C 5 205 46 HOH HOH . 
S 7 HOH C 6 206 48 HOH HOH . 
T 7 HOH D 1 201 23 HOH HOH . 
T 7 HOH D 2 202 10 HOH HOH . 
T 7 HOH D 3 203 37 HOH HOH . 
T 7 HOH D 4 204 17 HOH HOH . 
T 7 HOH D 5 205 39 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 FVK . . . M 4 -24.979 -21.865 47.908 1 59.64 ? C4 FVK 402 B 1 
HETATM 2 C C5 FVK . . . M 4 -26.275 -23.52 49.335 1 54.13 ? C5 FVK 402 B 1 
HETATM 3 C C6 FVK . . . M 4 -26.047 -25.938 49.124 1 51.18 ? C6 FVK 402 B 1 
HETATM 4 C C3 FVK . . . M 4 -25.591 -20.722 47.125 1 61.47 ? C3 FVK 402 B 1 
HETATM 5 C C1 FVK . . . M 4 -26.23 -21.103 49.839 1 58.59 ? C1 FVK 402 B 1 
HETATM 6 C C2 FVK . . . M 4 -26.833 -20.022 48.971 1 58.62 ? C2 FVK 402 B 1 
HETATM 7 O O2 FVK . . . M 4 -27.188 -23.681 50.142 1 56.14 ? O2 FVK 402 B 1 
HETATM 8 O O5 FVK . . . M 4 -20.929 -26.072 48.901 1 49.64 ? O5 FVK 402 B 1 
HETATM 9 O O4 FVK . . . M 4 -18.956 -33.755 52.568 1 43.02 ? O4 FVK 402 B 1 
HETATM 10 O O3 FVK . . . M 4 -20.617 -28.595 51.495 1 48.99 ? O3 FVK 402 B 1 
HETATM 11 O O1 FVK . . . M 4 -25.923 -19.613 47.958 1 61.24 ? O1 FVK 402 B 1 
HETATM 12 N N1 FVK . . . M 4 -25.846 -22.248 49.019 1 57.72 ? N1 FVK 402 B 1 
HETATM 13 N N2 FVK . . . M 4 -25.685 -24.563 48.787 1 51.9 ? N2 FVK 402 B 1 
HETATM 14 C C7 FVK . . . M 4 -24.869 -26.889 49.052 1 51.2 ? C7 FVK 402 B 1 
HETATM 15 N N3 FVK . . . M 4 -23.611 -26.295 49.511 1 50.33 ? N3 FVK 402 B 1 
HETATM 16 C C8 FVK . . . M 4 -22.682 -27.272 50.085 1 49.35 ? C8 FVK 402 B 1 
HETATM 17 C C9 FVK . . . M 4 -21.249 -26.76 50.101 1 49.51 ? C9 FVK 402 B 1 
HETATM 18 C C10 FVK . . . M 4 -20.287 -27.913 50.277 1 49.04 ? C10 FVK 402 B 1 
HETATM 19 C C11 FVK . . . M 4 -20.17 -29.878 51.701 1 47.71 ? C11 FVK 402 B 1 
HETATM 20 C C12 FVK . . . M 4 -20.599 -30.496 52.867 1 47.57 ? C12 FVK 402 B 1 
HETATM 21 C C13 FVK . . . M 4 -20.192 -31.789 53.161 1 47.01 ? C13 FVK 402 B 1 
HETATM 22 C C14 FVK . . . M 4 -19.357 -32.479 52.295 1 45.3 ? C14 FVK 402 B 1 
HETATM 23 C C15 FVK . . . M 4 -18.928 -31.865 51.132 1 46.07 ? C15 FVK 402 B 1 
HETATM 24 C C16 FVK . . . M 4 -19.33 -30.573 50.834 1 47.33 ? C16 FVK 402 B 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           24 
#