data_6H83 # _model_server_result.job_id K-Ro1H9XSGZqDjWwPnP11Q _model_server_result.datetime_utc '2025-08-31 16:16:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6h83 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 6H83 # _exptl.entry_id 6H83 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6H83 _cell.length_a 36.696 _cell.length_b 95.071 _cell.length_c 53.728 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6H83 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_755 -x+2,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 73.392 0 26.864 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 65 A CYS 275 1_555 E S2 BME . A BME 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc1 A NE2 HIS 54 A HIS 264 1_555 B CU CU . A CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? metalc ? metalc2 A OE1 GLU 55 A GLU 265 1_555 F NA NA . A NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc3 A OE2 GLU 55 A GLU 265 1_555 F NA NA . A NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.891 ? metalc ? metalc4 B CU CU . A CU 401 1_555 G O HOH . A HOH 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.858 ? metalc ? metalc5 B CU CU . A CU 401 1_555 G O HOH . A HOH 541 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? metalc ? metalc6 B CU CU . A CU 401 1_555 G O HOH . A HOH 546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6H83 _atom_sites.fract_transf_matrix[1][1] 0.027251 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010518 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018612 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CU A 1 401 1 CU CU . C 3 SO4 A 1 402 1 SO4 SO4 . D 3 SO4 A 1 403 2 SO4 SO4 . E 4 BME A 1 404 1 BME BME . F 5 NA A 1 405 1 NA NA . G 6 HOH A 1 501 23 HOH HOH . G 6 HOH A 2 502 19 HOH HOH . G 6 HOH A 3 503 52 HOH HOH . G 6 HOH A 4 504 31 HOH HOH . G 6 HOH A 5 505 32 HOH HOH . G 6 HOH A 6 506 44 HOH HOH . G 6 HOH A 7 507 35 HOH HOH . G 6 HOH A 8 508 7 HOH HOH . G 6 HOH A 9 509 18 HOH HOH . G 6 HOH A 10 510 14 HOH HOH . G 6 HOH A 11 511 15 HOH HOH . G 6 HOH A 12 512 9 HOH HOH . G 6 HOH A 13 513 13 HOH HOH . G 6 HOH A 14 514 20 HOH HOH . G 6 HOH A 15 515 41 HOH HOH . G 6 HOH A 16 516 6 HOH HOH . G 6 HOH A 17 517 5 HOH HOH . G 6 HOH A 18 518 17 HOH HOH . G 6 HOH A 19 519 38 HOH HOH . G 6 HOH A 20 520 8 HOH HOH . G 6 HOH A 21 521 47 HOH HOH . G 6 HOH A 22 522 22 HOH HOH . G 6 HOH A 23 523 29 HOH HOH . G 6 HOH A 24 524 11 HOH HOH . G 6 HOH A 25 525 4 HOH HOH . G 6 HOH A 26 526 21 HOH HOH . G 6 HOH A 27 527 26 HOH HOH . G 6 HOH A 28 528 1 HOH HOH . G 6 HOH A 29 529 2 HOH HOH . G 6 HOH A 30 530 25 HOH HOH . G 6 HOH A 31 531 34 HOH HOH . G 6 HOH A 32 532 51 HOH HOH . G 6 HOH A 33 533 28 HOH HOH . G 6 HOH A 34 534 49 HOH HOH . G 6 HOH A 35 535 10 HOH HOH . G 6 HOH A 36 536 42 HOH HOH . G 6 HOH A 37 537 16 HOH HOH . G 6 HOH A 38 538 45 HOH HOH . G 6 HOH A 39 539 43 HOH HOH . G 6 HOH A 40 540 39 HOH HOH . G 6 HOH A 41 541 30 HOH HOH . G 6 HOH A 42 542 24 HOH HOH . G 6 HOH A 43 543 27 HOH HOH . G 6 HOH A 44 544 46 HOH HOH . G 6 HOH A 45 545 3 HOH HOH . G 6 HOH A 46 546 53 HOH HOH . G 6 HOH A 47 547 50 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 5 _atom_site.Cartn_x 29.979 _atom_site.Cartn_y -2.774 _atom_site.Cartn_z -5.828 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 57.5 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 405 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 402 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #