data_6H8B # _model_server_result.job_id 4E-MIlqvhWEnpxlySTRalA _model_server_result.datetime_utc '2024-11-23 23:55:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6h8b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 6H8B # _exptl.entry_id 6H8B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 274.901 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,2,4-tris(oxidanyl)-1,3-dioxa-2$l^{4},4$l^{3}-dimolybdacyclobutane _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6H8B _cell.length_a 116.72 _cell.length_b 116.72 _cell.length_c 235.42 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6H8B _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 116.72 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 58.36 101.082485 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OE2 GLU 189 A GLU 190 1_555 I MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? metalc ? metalc2 B O PRO 226 A PRO 227 1_555 I MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc3 H O1B ATP . A ATP 302 1_555 I MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc4 H O2A ATP . A ATP 302 1_555 I MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc5 I MG MG . A MG 303 1_555 N O HOH . A HOH 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc6 I MG MG . A MG 303 1_555 N O HOH . A HOH 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? # _chem_comp.formula 'H3 Mo2 O5' _chem_comp.formula_weight 274.901 _chem_comp.id J7N _chem_comp.mon_nstd_flag . _chem_comp.name 2,2,4-tris(oxidanyl)-1,3-dioxa-2$l^{4},4$l^{3}-dimolybdacyclobutane _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 MO1 J7N sing 272 n n MO1 O3 J7N sing 273 n n MO1 O2 J7N sing 274 n n O3 MO2 J7N sing 275 n n O4 MO2 J7N sing 276 n n MO2 O2 J7N sing 277 n n MO2 O5 J7N sing 278 n n O1 H1 J7N sing 279 n n O4 H2 J7N sing 280 n n O5 H3 J7N sing 281 n n # _atom_sites.entry_id 6H8B _atom_sites.fract_transf_matrix[1][1] 0.008568 _atom_sites.fract_transf_matrix[1][2] 0.004946 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009893 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004248 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 J7T B 1 301 301 J7T 9M0 . D 4 J7N B 1 302 302 J7N 2M0 . E 5 J8E B 1 303 304 J8E 8HX . F 6 FUQ B 1 304 305 FUQ 5M4 . G 7 J7Q A 1 301 303 J7Q 7M0 . H 8 ATP A 1 302 301 ATP ATP . I 9 MG A 1 303 302 MG MgO . J 10 J8B A 1 304 303 J8B 8M0 . K 11 J85 A 1 305 304 J85 9HX . L 12 MOO A 1 306 305 MOO M10 . M 13 HOH B 1 401 195 HOH HOH . M 13 HOH B 2 402 162 HOH HOH . M 13 HOH B 3 403 175 HOH HOH . M 13 HOH B 4 404 123 HOH HOH . M 13 HOH B 5 405 84 HOH HOH . M 13 HOH B 6 406 41 HOH HOH . M 13 HOH B 7 407 149 HOH HOH . M 13 HOH B 8 408 75 HOH HOH . M 13 HOH B 9 409 132 HOH HOH . M 13 HOH B 10 410 139 HOH HOH . M 13 HOH B 11 411 165 HOH HOH . M 13 HOH B 12 412 189 HOH HOH . M 13 HOH B 13 413 143 HOH HOH . M 13 HOH B 14 414 36 HOH HOH . M 13 HOH B 15 415 203 HOH HOH . M 13 HOH B 16 416 188 HOH HOH . M 13 HOH B 17 417 163 HOH HOH . M 13 HOH B 18 418 12 HOH HOH . M 13 HOH B 19 419 112 HOH HOH . M 13 HOH B 20 420 29 HOH HOH . M 13 HOH B 21 421 93 HOH HOH . M 13 HOH B 22 422 27 HOH HOH . M 13 HOH B 23 423 97 HOH HOH . M 13 HOH B 24 424 73 HOH HOH . M 13 HOH B 25 425 24 HOH HOH . M 13 HOH B 26 426 33 HOH HOH . M 13 HOH B 27 427 196 HOH HOH . M 13 HOH B 28 428 47 HOH HOH . M 13 HOH B 29 429 129 HOH HOH . M 13 HOH B 30 430 141 HOH HOH . M 13 HOH B 31 431 15 HOH HOH . M 13 HOH B 32 432 56 HOH HOH . M 13 HOH B 33 433 152 HOH HOH . M 13 HOH B 34 434 185 HOH HOH . M 13 HOH B 35 435 42 HOH HOH . M 13 HOH B 36 436 98 HOH HOH . M 13 HOH B 37 437 6 HOH HOH . M 13 HOH B 38 438 45 HOH HOH . M 13 HOH B 39 439 9 HOH HOH . M 13 HOH B 40 440 133 HOH HOH . M 13 HOH B 41 441 30 HOH HOH . M 13 HOH B 42 442 136 HOH HOH . M 13 HOH B 43 443 151 HOH HOH . M 13 HOH B 44 444 157 HOH HOH . M 13 HOH B 45 445 68 HOH HOH . M 13 HOH B 46 446 78 HOH HOH . M 13 HOH B 47 447 107 HOH HOH . M 13 HOH B 48 448 197 HOH HOH . M 13 HOH B 49 449 53 HOH HOH . M 13 HOH B 50 450 64 HOH HOH . M 13 HOH B 51 451 113 HOH HOH . M 13 HOH B 52 452 96 HOH HOH . M 13 HOH B 53 453 153 HOH HOH . M 13 HOH B 54 454 37 HOH HOH . M 13 HOH B 55 455 114 HOH HOH . M 13 HOH B 56 456 146 HOH HOH . M 13 HOH B 57 457 38 HOH HOH . M 13 HOH B 58 458 52 HOH HOH . M 13 HOH B 59 459 44 HOH HOH . M 13 HOH B 60 460 158 HOH HOH . M 13 HOH B 61 461 108 HOH HOH . M 13 HOH B 62 462 200 HOH HOH . M 13 HOH B 63 463 147 HOH HOH . M 13 HOH B 64 464 31 HOH HOH . M 13 HOH B 65 465 71 HOH HOH . M 13 HOH B 66 466 166 HOH HOH . M 13 HOH B 67 467 43 HOH HOH . M 13 HOH B 68 468 22 HOH HOH . M 13 HOH B 69 469 51 HOH HOH . M 13 HOH B 70 470 180 HOH HOH . M 13 HOH B 71 471 40 HOH HOH . M 13 HOH B 72 472 115 HOH HOH . M 13 HOH B 73 473 99 HOH HOH . M 13 HOH B 74 474 72 HOH HOH . M 13 HOH B 75 475 201 HOH HOH . M 13 HOH B 76 476 21 HOH HOH . M 13 HOH B 77 477 69 HOH HOH . M 13 HOH B 78 478 211 HOH HOH . M 13 HOH B 79 479 193 HOH HOH . M 13 HOH B 80 480 39 HOH HOH . M 13 HOH B 81 481 186 HOH HOH . M 13 HOH B 82 482 148 HOH HOH . M 13 HOH B 83 483 202 HOH HOH . M 13 HOH B 84 484 4 HOH HOH . M 13 HOH B 85 485 3 HOH HOH . M 13 HOH B 86 486 142 HOH HOH . M 13 HOH B 87 487 95 HOH HOH . M 13 HOH B 88 488 125 HOH HOH . M 13 HOH B 89 489 210 HOH HOH . M 13 HOH B 90 490 160 HOH HOH . M 13 HOH B 91 491 172 HOH HOH . M 13 HOH B 92 492 184 HOH HOH . N 13 HOH A 1 401 79 HOH HOH . N 13 HOH A 2 402 100 HOH HOH . N 13 HOH A 3 403 67 HOH HOH . N 13 HOH A 4 404 144 HOH HOH . N 13 HOH A 5 405 106 HOH HOH . N 13 HOH A 6 406 199 HOH HOH . N 13 HOH A 7 407 62 HOH HOH . N 13 HOH A 8 408 5 HOH HOH . N 13 HOH A 9 409 209 HOH HOH . N 13 HOH A 10 410 128 HOH HOH . N 13 HOH A 11 411 120 HOH HOH . N 13 HOH A 12 412 87 HOH HOH . N 13 HOH A 13 413 102 HOH HOH . N 13 HOH A 14 414 302 HOH MgO . N 13 HOH A 15 415 82 HOH HOH . N 13 HOH A 16 416 61 HOH HOH . N 13 HOH A 17 417 171 HOH HOH . N 13 HOH A 18 418 48 HOH HOH . N 13 HOH A 19 419 155 HOH HOH . N 13 HOH A 20 420 7 HOH HOH . N 13 HOH A 21 421 121 HOH HOH . N 13 HOH A 22 422 119 HOH HOH . N 13 HOH A 23 423 1 HOH HOH . N 13 HOH A 24 424 11 HOH HOH . N 13 HOH A 25 425 110 HOH HOH . N 13 HOH A 26 426 59 HOH HOH . N 13 HOH A 27 427 18 HOH HOH . N 13 HOH A 28 428 25 HOH HOH . N 13 HOH A 29 429 169 HOH HOH . N 13 HOH A 30 430 14 HOH HOH . N 13 HOH A 31 431 2 HOH HOH . N 13 HOH A 32 432 76 HOH HOH . N 13 HOH A 33 433 54 HOH HOH . N 13 HOH A 34 434 109 HOH HOH . N 13 HOH A 35 435 32 HOH HOH . N 13 HOH A 36 436 88 HOH HOH . N 13 HOH A 37 437 65 HOH HOH . N 13 HOH A 38 438 137 HOH HOH . N 13 HOH A 39 439 104 HOH HOH . N 13 HOH A 40 440 177 HOH HOH . N 13 HOH A 41 441 86 HOH HOH . N 13 HOH A 42 442 89 HOH HOH . N 13 HOH A 43 443 117 HOH HOH . N 13 HOH A 44 444 138 HOH HOH . N 13 HOH A 45 445 17 HOH HOH . N 13 HOH A 46 446 83 HOH HOH . N 13 HOH A 47 447 55 HOH HOH . N 13 HOH A 48 448 302 HOH MgO . N 13 HOH A 49 449 46 HOH HOH . N 13 HOH A 50 450 126 HOH HOH . N 13 HOH A 51 451 63 HOH HOH . N 13 HOH A 52 452 116 HOH HOH . N 13 HOH A 53 453 124 HOH HOH . N 13 HOH A 54 454 103 HOH HOH . N 13 HOH A 55 455 178 HOH HOH . N 13 HOH A 56 456 74 HOH HOH . N 13 HOH A 57 457 77 HOH HOH . N 13 HOH A 58 458 183 HOH HOH . N 13 HOH A 59 459 111 HOH HOH . N 13 HOH A 60 460 170 HOH HOH . N 13 HOH A 61 461 194 HOH HOH . N 13 HOH A 62 462 35 HOH HOH . N 13 HOH A 63 463 49 HOH HOH . N 13 HOH A 64 464 57 HOH HOH . N 13 HOH A 65 465 60 HOH HOH . N 13 HOH A 66 466 50 HOH HOH . N 13 HOH A 67 467 20 HOH HOH . N 13 HOH A 68 468 13 HOH HOH . N 13 HOH A 69 469 91 HOH HOH . N 13 HOH A 70 470 19 HOH HOH . N 13 HOH A 71 471 179 HOH HOH . N 13 HOH A 72 472 26 HOH HOH . N 13 HOH A 73 473 176 HOH HOH . N 13 HOH A 74 474 10 HOH HOH . N 13 HOH A 75 475 66 HOH HOH . N 13 HOH A 76 476 92 HOH HOH . N 13 HOH A 77 477 101 HOH HOH . N 13 HOH A 78 478 105 HOH HOH . N 13 HOH A 79 479 192 HOH HOH . N 13 HOH A 80 480 90 HOH HOH . N 13 HOH A 81 481 181 HOH HOH . N 13 HOH A 82 482 28 HOH HOH . N 13 HOH A 83 483 81 HOH HOH . N 13 HOH A 84 484 173 HOH HOH . N 13 HOH A 85 485 16 HOH HOH . N 13 HOH A 86 486 94 HOH HOH . N 13 HOH A 87 487 190 HOH HOH . N 13 HOH A 88 488 8 HOH HOH . N 13 HOH A 89 489 154 HOH HOH . N 13 HOH A 90 490 187 HOH HOH . N 13 HOH A 91 491 167 HOH HOH . N 13 HOH A 92 492 130 HOH HOH . N 13 HOH A 93 493 80 HOH HOH . N 13 HOH A 94 494 145 HOH HOH . N 13 HOH A 95 495 159 HOH HOH . N 13 HOH A 96 496 23 HOH HOH . N 13 HOH A 97 497 85 HOH HOH . N 13 HOH A 98 498 118 HOH HOH . N 13 HOH A 99 499 191 HOH HOH . N 13 HOH A 100 500 131 HOH HOH . N 13 HOH A 101 501 34 HOH HOH . N 13 HOH A 102 502 150 HOH HOH . N 13 HOH A 103 503 140 HOH HOH . N 13 HOH A 104 504 174 HOH HOH . N 13 HOH A 105 505 164 HOH HOH . N 13 HOH A 106 506 161 HOH HOH . N 13 HOH A 107 507 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 MO MO1 J7N . . . D 4 47.423 27.971 18.585 0.5 20.19 ? MO1 J7N 302 B 1 HETATM 2 MO MO2 J7N . . . D 4 46.713 31.23 20.034 0.5 28.01 ? MO2 J7N 302 B 1 HETATM 3 O O1 J7N . . . D 4 47.174 27.72 16.516 0 30 ? O1 J7N 302 B 1 HETATM 4 O O3 J7N . . . D 4 45.978 29.657 18.667 0 30 ? O3 J7N 302 B 1 HETATM 5 O O4 J7N . . . D 4 47.588 32.076 18.708 0 30 ? O4 J7N 302 B 1 HETATM 6 O O5 J7N . . . D 4 45.744 30.436 21.72 0 30 ? O5 J7N 302 B 1 HETATM 7 O O2 J7N . . . D 4 48.285 29.545 20.053 0 30 ? O2 J7N 302 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 7 #