data_6H8H # _model_server_result.job_id rYIpT7pVu1m0PH_9uFkV8w _model_server_result.datetime_utc '2024-11-06 15:30:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6h8h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":302}' # _entry.id 6H8H # _exptl.entry_id 6H8H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6H8H _cell.length_a 117.1 _cell.length_b 117.1 _cell.length_c 235.62 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6H8H _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 117.1 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 58.55 101.411575 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OE1 GLU 189 A GLU 190 1_555 I MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc2 B O PRO 226 A PRO 227 1_555 I MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc3 H O1B ATP . A ATP 301 1_555 I MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc4 H O2A ATP . A ATP 301 1_555 I MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? metalc ? metalc5 I MG MG . A MG 302 1_555 N O HOH . A HOH 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc6 I MG MG . A MG 302 1_555 N O HOH . A HOH 460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6H8H _atom_sites.fract_transf_matrix[1][1] 0.00854 _atom_sites.fract_transf_matrix[1][2] 0.00493 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009861 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004244 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 8M0 B 1 301 302 8M0 8M0 . D 4 FUQ B 1 302 303 FUQ 5M4 . E 5 GX2 B 1 303 304 GX2 14M . F 6 PO4 B 1 304 330 PO4 PO4 . G 6 PO4 B 1 305 331 PO4 PO4 . H 7 ATP A 1 301 301 ATP ATP . I 8 MG A 1 302 302 MG MgO . J 3 8M0 A 1 303 303 8M0 8M0 . K 9 MOO A 1 304 304 MOO M10 . L 10 M27 A 1 305 307 M27 6HX . M 11 HOH B 1 401 99 HOH HOH . M 11 HOH B 2 402 260 HOH HOH . M 11 HOH B 3 403 19 HOH HOH . M 11 HOH B 4 404 173 HOH HOH . M 11 HOH B 5 405 180 HOH HOH . M 11 HOH B 6 406 244 HOH HOH . M 11 HOH B 7 407 137 HOH HOH . M 11 HOH B 8 408 161 HOH HOH . M 11 HOH B 9 409 97 HOH HOH . M 11 HOH B 10 410 208 HOH HOH . M 11 HOH B 11 411 108 HOH HOH . M 11 HOH B 12 412 212 HOH HOH . M 11 HOH B 13 413 103 HOH HOH . M 11 HOH B 14 414 256 HOH HOH . M 11 HOH B 15 415 207 HOH HOH . M 11 HOH B 16 416 119 HOH HOH . M 11 HOH B 17 417 250 HOH HOH . M 11 HOH B 18 418 252 HOH HOH . M 11 HOH B 19 419 249 HOH HOH . M 11 HOH B 20 420 9 HOH HOH . M 11 HOH B 21 421 236 HOH HOH . M 11 HOH B 22 422 164 HOH HOH . M 11 HOH B 23 423 145 HOH HOH . M 11 HOH B 24 424 114 HOH HOH . M 11 HOH B 25 425 187 HOH HOH . M 11 HOH B 26 426 115 HOH HOH . M 11 HOH B 27 427 245 HOH HOH . M 11 HOH B 28 428 168 HOH HOH . M 11 HOH B 29 429 149 HOH HOH . M 11 HOH B 30 430 31 HOH HOH . M 11 HOH B 31 431 10 HOH HOH . M 11 HOH B 32 432 41 HOH HOH . M 11 HOH B 33 433 240 HOH HOH . M 11 HOH B 34 434 183 HOH HOH . M 11 HOH B 35 435 186 HOH HOH . M 11 HOH B 36 436 125 HOH HOH . M 11 HOH B 37 437 106 HOH HOH . M 11 HOH B 38 438 91 HOH HOH . M 11 HOH B 39 439 63 HOH HOH . M 11 HOH B 40 440 248 HOH HOH . M 11 HOH B 41 441 4 HOH HOH . M 11 HOH B 42 442 225 HOH HOH . M 11 HOH B 43 443 86 HOH HOH . M 11 HOH B 44 444 152 HOH HOH . M 11 HOH B 45 445 147 HOH HOH . M 11 HOH B 46 446 154 HOH HOH . M 11 HOH B 47 447 178 HOH HOH . M 11 HOH B 48 448 42 HOH HOH . M 11 HOH B 49 449 218 HOH HOH . M 11 HOH B 50 450 66 HOH HOH . M 11 HOH B 51 451 83 HOH HOH . M 11 HOH B 52 452 62 HOH HOH . M 11 HOH B 53 453 182 HOH HOH . M 11 HOH B 54 454 162 HOH HOH . M 11 HOH B 55 455 51 HOH HOH . M 11 HOH B 56 456 138 HOH HOH . M 11 HOH B 57 457 48 HOH HOH . M 11 HOH B 58 458 221 HOH HOH . M 11 HOH B 59 459 12 HOH HOH . M 11 HOH B 60 460 194 HOH HOH . M 11 HOH B 61 461 166 HOH HOH . M 11 HOH B 62 462 167 HOH HOH . M 11 HOH B 63 463 204 HOH HOH . M 11 HOH B 64 464 111 HOH HOH . M 11 HOH B 65 465 37 HOH HOH . M 11 HOH B 66 466 200 HOH HOH . M 11 HOH B 67 467 105 HOH HOH . M 11 HOH B 68 468 189 HOH HOH . M 11 HOH B 69 469 128 HOH HOH . M 11 HOH B 70 470 21 HOH HOH . M 11 HOH B 71 471 73 HOH HOH . M 11 HOH B 72 472 163 HOH HOH . M 11 HOH B 73 473 196 HOH HOH . M 11 HOH B 74 474 205 HOH HOH . M 11 HOH B 75 475 71 HOH HOH . M 11 HOH B 76 476 217 HOH HOH . M 11 HOH B 77 477 141 HOH HOH . M 11 HOH B 78 478 257 HOH HOH . M 11 HOH B 79 479 220 HOH HOH . M 11 HOH B 80 480 241 HOH HOH . M 11 HOH B 81 481 255 HOH HOH . M 11 HOH B 82 482 239 HOH HOH . M 11 HOH B 83 483 118 HOH HOH . M 11 HOH B 84 484 193 HOH HOH . M 11 HOH B 85 485 124 HOH HOH . M 11 HOH B 86 486 98 HOH HOH . M 11 HOH B 87 487 1 HOH HOH . M 11 HOH B 88 488 146 HOH HOH . M 11 HOH B 89 489 228 HOH HOH . M 11 HOH B 90 490 129 HOH HOH . M 11 HOH B 91 491 216 HOH HOH . M 11 HOH B 92 492 258 HOH HOH . M 11 HOH B 93 493 215 HOH HOH . M 11 HOH B 94 494 159 HOH HOH . M 11 HOH B 95 495 197 HOH HOH . M 11 HOH B 96 496 77 HOH HOH . M 11 HOH B 97 497 17 HOH HOH . M 11 HOH B 98 498 176 HOH HOH . M 11 HOH B 99 499 58 HOH HOH . M 11 HOH B 100 500 24 HOH HOH . M 11 HOH B 101 501 231 HOH HOH . M 11 HOH B 102 502 151 HOH HOH . M 11 HOH B 103 503 191 HOH HOH . M 11 HOH B 104 504 213 HOH HOH . M 11 HOH B 105 505 199 HOH HOH . M 11 HOH B 106 506 7 HOH HOH . M 11 HOH B 107 507 109 HOH HOH . M 11 HOH B 108 508 158 HOH HOH . M 11 HOH B 109 509 188 HOH HOH . M 11 HOH B 110 510 223 HOH HOH . M 11 HOH B 111 511 219 HOH HOH . N 11 HOH A 1 401 15 HOH HOH . N 11 HOH A 2 402 185 HOH HOH . N 11 HOH A 3 403 116 HOH HOH . N 11 HOH A 4 404 172 HOH HOH . N 11 HOH A 5 405 50 HOH HOH . N 11 HOH A 6 406 89 HOH HOH . N 11 HOH A 7 407 67 HOH HOH . N 11 HOH A 8 408 192 HOH HOH . N 11 HOH A 9 409 29 HOH HOH . N 11 HOH A 10 410 139 HOH HOH . N 11 HOH A 11 411 8 HOH HOH . N 11 HOH A 12 412 210 HOH HOH . N 11 HOH A 13 413 61 HOH HOH . N 11 HOH A 14 414 80 HOH HOH . N 11 HOH A 15 415 76 HOH HOH . N 11 HOH A 16 416 64 HOH HOH . N 11 HOH A 17 417 148 HOH HOH . N 11 HOH A 18 418 132 HOH HOH . N 11 HOH A 19 419 143 HOH HOH . N 11 HOH A 20 420 131 HOH HOH . N 11 HOH A 21 421 36 HOH HOH . N 11 HOH A 22 422 169 HOH HOH . N 11 HOH A 23 423 302 HOH MgO . N 11 HOH A 24 424 47 HOH HOH . N 11 HOH A 25 425 224 HOH HOH . N 11 HOH A 26 426 74 HOH HOH . N 11 HOH A 27 427 227 HOH HOH . N 11 HOH A 28 428 120 HOH HOH . N 11 HOH A 29 429 43 HOH HOH . N 11 HOH A 30 430 22 HOH HOH . N 11 HOH A 31 431 96 HOH HOH . N 11 HOH A 32 432 46 HOH HOH . N 11 HOH A 33 433 68 HOH HOH . N 11 HOH A 34 434 251 HOH HOH . N 11 HOH A 35 435 198 HOH HOH . N 11 HOH A 36 436 59 HOH HOH . N 11 HOH A 37 437 101 HOH HOH . N 11 HOH A 38 438 33 HOH HOH . N 11 HOH A 39 439 20 HOH HOH . N 11 HOH A 40 440 195 HOH HOH . N 11 HOH A 41 441 3 HOH HOH . N 11 HOH A 42 442 87 HOH HOH . N 11 HOH A 43 443 229 HOH HOH . N 11 HOH A 44 444 72 HOH HOH . N 11 HOH A 45 445 32 HOH HOH . N 11 HOH A 46 446 184 HOH HOH . N 11 HOH A 47 447 170 HOH HOH . N 11 HOH A 48 448 38 HOH HOH . N 11 HOH A 49 449 14 HOH HOH . N 11 HOH A 50 450 171 HOH HOH . N 11 HOH A 51 451 113 HOH HOH . N 11 HOH A 52 452 135 HOH HOH . N 11 HOH A 53 453 127 HOH HOH . N 11 HOH A 54 454 75 HOH HOH . N 11 HOH A 55 455 40 HOH HOH . N 11 HOH A 56 456 65 HOH HOH . N 11 HOH A 57 457 26 HOH HOH . N 11 HOH A 58 458 35 HOH HOH . N 11 HOH A 59 459 179 HOH HOH . N 11 HOH A 60 460 302 HOH MgO . N 11 HOH A 61 461 52 HOH HOH . N 11 HOH A 62 462 202 HOH HOH . N 11 HOH A 63 463 13 HOH HOH . N 11 HOH A 64 464 57 HOH HOH . N 11 HOH A 65 465 25 HOH HOH . N 11 HOH A 66 466 79 HOH HOH . N 11 HOH A 67 467 209 HOH HOH . N 11 HOH A 68 468 45 HOH HOH . N 11 HOH A 69 469 222 HOH HOH . N 11 HOH A 70 470 16 HOH HOH . N 11 HOH A 71 471 28 HOH HOH . N 11 HOH A 72 472 53 HOH HOH . N 11 HOH A 73 473 6 HOH HOH . N 11 HOH A 74 474 142 HOH HOH . N 11 HOH A 75 475 95 HOH HOH . N 11 HOH A 76 476 203 HOH HOH . N 11 HOH A 77 477 237 HOH HOH . N 11 HOH A 78 478 110 HOH HOH . N 11 HOH A 79 479 112 HOH HOH . N 11 HOH A 80 480 85 HOH HOH . N 11 HOH A 81 481 102 HOH HOH . N 11 HOH A 82 482 23 HOH HOH . N 11 HOH A 83 483 121 HOH HOH . N 11 HOH A 84 484 201 HOH HOH . N 11 HOH A 85 485 238 HOH HOH . N 11 HOH A 86 486 49 HOH HOH . N 11 HOH A 87 487 54 HOH HOH . N 11 HOH A 88 488 181 HOH HOH . N 11 HOH A 89 489 126 HOH HOH . N 11 HOH A 90 490 55 HOH HOH . N 11 HOH A 91 491 232 HOH HOH . N 11 HOH A 92 492 235 HOH HOH . N 11 HOH A 93 493 88 HOH HOH . N 11 HOH A 94 494 92 HOH HOH . N 11 HOH A 95 495 30 HOH HOH . N 11 HOH A 96 496 84 HOH HOH . N 11 HOH A 97 497 140 HOH HOH . N 11 HOH A 98 498 175 HOH HOH . N 11 HOH A 99 499 177 HOH HOH . N 11 HOH A 100 500 82 HOH HOH . N 11 HOH A 101 501 5 HOH HOH . N 11 HOH A 102 502 27 HOH HOH . N 11 HOH A 103 503 44 HOH HOH . N 11 HOH A 104 504 190 HOH HOH . N 11 HOH A 105 505 11 HOH HOH . N 11 HOH A 106 506 122 HOH HOH . N 11 HOH A 107 507 56 HOH HOH . N 11 HOH A 108 508 246 HOH HOH . N 11 HOH A 109 509 165 HOH HOH . N 11 HOH A 110 510 253 HOH HOH . N 11 HOH A 111 511 134 HOH HOH . N 11 HOH A 112 512 160 HOH HOH . N 11 HOH A 113 513 70 HOH HOH . N 11 HOH A 114 514 211 HOH HOH . N 11 HOH A 115 515 242 HOH HOH . N 11 HOH A 116 516 2 HOH HOH . N 11 HOH A 117 517 233 HOH HOH . N 11 HOH A 118 518 214 HOH HOH . N 11 HOH A 119 519 247 HOH HOH . N 11 HOH A 120 520 259 HOH HOH . N 11 HOH A 121 521 117 HOH HOH . N 11 HOH A 122 522 234 HOH HOH . N 11 HOH A 123 523 81 HOH HOH . N 11 HOH A 124 524 144 HOH HOH . N 11 HOH A 125 525 243 HOH HOH . N 11 HOH A 126 526 174 HOH HOH . N 11 HOH A 127 527 156 HOH HOH . N 11 HOH A 128 528 254 HOH HOH . N 11 HOH A 129 529 78 HOH HOH . N 11 HOH A 130 530 107 HOH HOH . N 11 HOH A 131 531 136 HOH HOH . N 11 HOH A 132 532 226 HOH HOH . N 11 HOH A 133 533 157 HOH HOH . N 11 HOH A 134 534 206 HOH HOH . N 11 HOH A 135 535 104 HOH HOH . N 11 HOH A 136 536 100 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 8 _atom_site.Cartn_x 28.6 _atom_site.Cartn_y 27.179 _atom_site.Cartn_z 38.616 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 33.6 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #