data_6H8K # _model_server_result.job_id xqIeOXY78VZ-a0hRtBqbYg _model_server_result.datetime_utc '2024-12-21 12:37:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6h8k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"CC","auth_seq_id":500}' # _entry.id 6H8K # _exptl.entry_id 6H8K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.64 _entity.id 50 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IRON/SULFUR CLUSTER' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6H8K _cell.length_a 316.31 _cell.length_b 316.31 _cell.length_c 819.18 _cell.Z_PDB 90 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6H8K _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 73-meric _pdbx_struct_assembly.oligomeric_count 73 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 50 WB N N ? 50 XB N N ? 50 YB N N ? 50 AC N N ? 50 BC N N ? 50 CC N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 C SG CYS 40 3 CYS 40 1_555 N SG CYS 75 K CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc1 G SG CYS 45 A CYS 80 1_555 VB FE1 FES . A FES 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc2 G SG CYS 62 A CYS 97 1_555 VB FE2 FES . A FES 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc3 G SG CYS 98 A CYS 133 1_555 WB FE3 SF4 . A SF4 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.629 ? metalc ? metalc4 G SG CYS 107 A CYS 142 1_555 WB FE1 SF4 . A SF4 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? metalc ? metalc5 G SG CYS 147 A CYS 186 1_555 XB FE2 SF4 . A SF4 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc6 H SG CYS 290 B CYS 381 1_555 YB FE4 SF4 . B SF4 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc7 H SG CYS 293 B CYS 384 1_555 YB FE3 SF4 . B SF4 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? metalc ? metalc8 H SG CYS 296 B CYS 387 1_555 YB FE2 SF4 . B SF4 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? metalc ? metalc9 L SG CYS 65 H CYS 127 1_555 ZB FE2 FES . H FES 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc10 L SG CYS 70 H CYS 132 1_555 ZB FE2 FES . H FES 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? metalc ? metalc11 L SG CYS 104 H CYS 168 1_555 ZB FE1 FES . H FES 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc12 M SG CYS 45 I CYS 133 1_555 BC FE4 SF4 . I SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc13 M SG CYS 52 I CYS 140 1_555 AC FE1 SF4 . I SF4 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc14 M SG CYS 81 I CYS 169 1_555 AC FE2 SF4 . I SF4 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc15 M SG CYS 84 I CYS 172 1_555 AC FE4 SF4 . I SF4 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc16 M SG CYS 87 I CYS 175 1_555 AC FE3 SF4 . I SF4 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc17 N SG CYS 28 K CYS 86 1_555 CC FE2 SF4 . K SF4 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc18 N SG CYS 92 K CYS 150 1_555 CC FE1 SF4 . K SF4 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc19 N SG CYS 122 K CYS 180 1_555 CC FE4 SF4 . K SF4 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? # _chem_comp.formula 'Fe4 S4' _chem_comp.formula_weight 351.64 _chem_comp.id SF4 _chem_comp.mon_nstd_flag . _chem_comp.name 'IRON/SULFUR CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S2 SF4 sing 292 n n FE1 S3 SF4 sing 293 n n FE1 S4 SF4 sing 294 n n FE2 S1 SF4 sing 295 n n FE2 S3 SF4 sing 296 n n FE2 S4 SF4 sing 297 n n FE3 S1 SF4 sing 298 n n FE3 S2 SF4 sing 299 n n FE3 S4 SF4 sing 300 n n FE4 S1 SF4 sing 301 n n FE4 S2 SF4 sing 302 n n FE4 S3 SF4 sing 303 n n # _atom_sites.entry_id 6H8K _atom_sites.fract_transf_matrix[1][1] 0.003161 _atom_sites.fract_transf_matrix[1][2] 0.001825 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003651 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001221 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code VB 49 FES A 1 900 900 FES FES . WB 50 SF4 A 1 901 901 SF4 SF4 . XB 50 SF4 A 1 902 902 SF4 SF4 . YB 50 SF4 B 1 500 500 SF4 SF4 . ZB 49 FES H 1 300 300 FES FES . AC 50 SF4 I 1 500 500 SF4 SF4 . BC 50 SF4 I 1 501 501 SF4 SF4 . CC 50 SF4 K 1 500 500 SF4 SF4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 SF4 . . . CC 50 -11.022 123.038 -32.947 1 142.56 ? FE1 SF4 500 K 1 HETATM 2 FE FE2 SF4 . . . CC 50 -11.898 124.049 -35.08 1 138.32 ? FE2 SF4 500 K 1 HETATM 3 FE FE3 SF4 . . . CC 50 -13.248 122.284 -33.895 1 150.87 ? FE3 SF4 500 K 1 HETATM 4 FE FE4 SF4 . . . CC 50 -13.152 124.18 -32.238 1 149.1 ? FE4 SF4 500 K 1 HETATM 5 S S1 SF4 . . . CC 50 -13.833 124.262 -34.241 1 142.8 ? S1 SF4 500 K 1 HETATM 6 S S2 SF4 . . . CC 50 -12.627 122.175 -31.883 1 186.28 ? S2 SF4 500 K 1 HETATM 7 S S3 SF4 . . . CC 50 -11.507 125.053 -33.254 1 141.4 ? S3 SF4 500 K 1 HETATM 8 S S4 SF4 . . . CC 50 -11.348 122.042 -34.777 1 139.35 ? S4 SF4 500 K 1 # _model_server_stats.io_time_ms 243 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 55 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #