data_6H92 # _model_server_result.job_id IYxzbuVkfglX1EpyVHaecw _model_server_result.datetime_utc '2024-12-01 22:44:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6h92 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 6H92 # _exptl.entry_id 6H92 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.66 _cell.angle_gamma 90 _cell.entry_id 6H92 _cell.length_a 38.41 _cell.length_b 117.18 _cell.length_c 52.98 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6H92 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,F 1 1 B,D,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PHE 7 A PHE 7 1_555 A N PHD 8 A PHD 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C PHD 8 A PHD 8 1_555 A N LEU 9 A LEU 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale3 B C PHE 7 B PHE 7 1_555 B N PHD 8 B PHD 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 B C PHD 8 B PHD 8 1_555 B N LEU 9 B LEU 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? metalc ? metalc1 A OD2 PHD 8 A PHD 8 1_555 C MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc2 A OP1 PHD 8 A PHD 8 1_555 C MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc3 A O ASP 10 A ASP 10 1_555 C MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc4 A OD1 ASP 170 A ASP 170 1_555 C MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.932 ? metalc ? metalc5 B OP2 PHD 8 B PHD 8 1_555 D NA NA . B NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc6 B O ASP 10 B ASP 10 1_555 D NA NA . B NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? metalc ? metalc7 B OD2 ASP 10 B ASP 10 1_555 D NA NA . B NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.17 ? metalc ? metalc8 B OD1 ASP 170 B ASP 170 1_555 D NA NA . B NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6H92 _atom_sites.fract_transf_matrix[1][1] 0.026035 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003965 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008534 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019093 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 301 1 MG MG . D 3 NA B 1 301 1 NA NA . E 4 UVW B 1 302 1 UVW UVW . F 5 HOH A 1 401 8 HOH HOH . F 5 HOH A 2 402 13 HOH HOH . F 5 HOH A 3 403 4 HOH HOH . F 5 HOH A 4 404 9 HOH HOH . F 5 HOH A 5 405 21 HOH HOH . F 5 HOH A 6 406 17 HOH HOH . F 5 HOH A 7 407 65 HOH HOH . F 5 HOH A 8 408 12 HOH HOH . F 5 HOH A 9 409 37 HOH HOH . F 5 HOH A 10 410 5 HOH HOH . F 5 HOH A 11 411 64 HOH HOH . F 5 HOH A 12 412 52 HOH HOH . F 5 HOH A 13 413 44 HOH HOH . F 5 HOH A 14 414 78 HOH HOH . F 5 HOH A 15 415 30 HOH HOH . F 5 HOH A 16 416 35 HOH HOH . F 5 HOH A 17 417 47 HOH HOH . F 5 HOH A 18 418 23 HOH HOH . F 5 HOH A 19 419 10 HOH HOH . F 5 HOH A 20 420 53 HOH HOH . F 5 HOH A 21 421 29 HOH HOH . F 5 HOH A 22 422 41 HOH HOH . F 5 HOH A 23 423 59 HOH HOH . F 5 HOH A 24 424 73 HOH HOH . F 5 HOH A 25 425 76 HOH HOH . G 5 HOH B 1 401 77 HOH HOH . G 5 HOH B 2 402 18 HOH HOH . G 5 HOH B 3 403 24 HOH HOH . G 5 HOH B 4 404 15 HOH HOH . G 5 HOH B 5 405 11 HOH HOH . G 5 HOH B 6 406 20 HOH HOH . G 5 HOH B 7 407 2 HOH HOH . G 5 HOH B 8 408 16 HOH HOH . G 5 HOH B 9 409 6 HOH HOH . G 5 HOH B 10 410 75 HOH HOH . G 5 HOH B 11 411 22 HOH HOH . G 5 HOH B 12 412 26 HOH HOH . G 5 HOH B 13 413 63 HOH HOH . G 5 HOH B 14 414 7 HOH HOH . G 5 HOH B 15 415 14 HOH HOH . G 5 HOH B 16 416 48 HOH HOH . G 5 HOH B 17 417 68 HOH HOH . G 5 HOH B 18 418 54 HOH HOH . G 5 HOH B 19 419 40 HOH HOH . G 5 HOH B 20 420 3 HOH HOH . G 5 HOH B 21 421 36 HOH HOH . G 5 HOH B 22 422 58 HOH HOH . G 5 HOH B 23 423 27 HOH HOH . G 5 HOH B 24 424 60 HOH HOH . G 5 HOH B 25 425 46 HOH HOH . G 5 HOH B 26 426 74 HOH HOH . G 5 HOH B 27 427 45 HOH HOH . G 5 HOH B 28 428 49 HOH HOH . G 5 HOH B 29 429 34 HOH HOH . G 5 HOH B 30 430 19 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 1.646 _atom_site.Cartn_y -29.857 _atom_site.Cartn_z 15.294 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.47 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 301 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #