data_6H9J
#
_model_server_result.job_id            Y1r3F0eYd1acNz5bgwO3ew 
_model_server_result.datetime_utc      '2024-12-21 14:41:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6h9j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":402}' 
#
_entry.id    6H9J 
#
_exptl.entry_id    6H9J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6H9J 
_cell.length_a            86.4 
_cell.length_b            86.4 
_cell.length_c            149.62 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6H9J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_465 y-1,x+1,-z 0 1 0 1 0 0 0 0 -1 -86.4 86.4 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 188 A HIS 199 1_555 K ZN ZN . A ZN 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? 
metalc ? metalc2 A OD2 ASP 190 A ASP 201 1_555 K ZN ZN . A ZN 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? 
metalc ? metalc3 A NE2 HIS 268 A HIS 279 1_555 K ZN ZN . A ZN 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
metalc ? metalc4 C O2 OGA . A OGA 401 1_555 K ZN ZN . A ZN 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? 
metalc ? metalc5 C O2' OGA . A OGA 401 1_555 K ZN ZN . A ZN 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? 
metalc ? metalc6 K ZN ZN . A ZN 409 1_555 L O HOH . A HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     6H9J 
_atom_sites.fract_transf_matrix[1][1]    0.011574 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011574 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006684 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 OGA A 1 401 1 OGA OGA . 
D 4 GOL A 1 402 1 GOL GOL . 
E 4 GOL A 1 403 2 GOL GOL . 
F 4 GOL A 1 404 3 GOL GOL . 
G 5 SO4 A 1 405 1 SO4 SO4 . 
H 5 SO4 A 1 406 2 SO4 SO4 . 
I 5 SO4 A 1 407 5 SO4 SO4 . 
J 5 SO4 A 1 408 6 SO4 SO4 . 
K 6 ZN A 1 409 1 ZN ZN . 
L 7 HOH A 1 501 120 HOH HOH . 
L 7 HOH A 2 502 24 HOH HOH . 
L 7 HOH A 3 503 122 HOH HOH . 
L 7 HOH A 4 504 138 HOH HOH . 
L 7 HOH A 5 505 72 HOH HOH . 
L 7 HOH A 6 506 55 HOH HOH . 
L 7 HOH A 7 507 129 HOH HOH . 
L 7 HOH A 8 508 93 HOH HOH . 
L 7 HOH A 9 509 151 HOH HOH . 
L 7 HOH A 10 510 59 HOH HOH . 
L 7 HOH A 11 511 94 HOH HOH . 
L 7 HOH A 12 512 66 HOH HOH . 
L 7 HOH A 13 513 102 HOH HOH . 
L 7 HOH A 14 514 44 HOH HOH . 
L 7 HOH A 15 515 25 HOH HOH . 
L 7 HOH A 16 516 68 HOH HOH . 
L 7 HOH A 17 517 161 HOH HOH . 
L 7 HOH A 18 518 105 HOH HOH . 
L 7 HOH A 19 519 154 HOH HOH . 
L 7 HOH A 20 520 77 HOH HOH . 
L 7 HOH A 21 521 141 HOH HOH . 
L 7 HOH A 22 522 100 HOH HOH . 
L 7 HOH A 23 523 56 HOH HOH . 
L 7 HOH A 24 524 40 HOH HOH . 
L 7 HOH A 25 525 235 HOH HOH . 
L 7 HOH A 26 526 2 HOH HOH . 
L 7 HOH A 27 527 48 HOH HOH . 
L 7 HOH A 28 528 89 HOH HOH . 
L 7 HOH A 29 529 41 HOH HOH . 
L 7 HOH A 30 530 4 HOH HOH . 
L 7 HOH A 31 531 51 HOH HOH . 
L 7 HOH A 32 532 5 HOH HOH . 
L 7 HOH A 33 533 57 HOH HOH . 
L 7 HOH A 34 534 164 HOH HOH . 
L 7 HOH A 35 535 121 HOH HOH . 
L 7 HOH A 36 536 6 HOH HOH . 
L 7 HOH A 37 537 242 HOH HOH . 
L 7 HOH A 38 538 73 HOH HOH . 
L 7 HOH A 39 539 91 HOH HOH . 
L 7 HOH A 40 540 7 HOH HOH . 
L 7 HOH A 41 541 58 HOH HOH . 
L 7 HOH A 42 542 125 HOH HOH . 
L 7 HOH A 43 543 1 HOH HOH . 
L 7 HOH A 44 544 43 HOH HOH . 
L 7 HOH A 45 545 126 HOH HOH . 
L 7 HOH A 46 546 16 HOH HOH . 
L 7 HOH A 47 547 23 HOH HOH . 
L 7 HOH A 48 548 75 HOH HOH . 
L 7 HOH A 49 549 8 HOH HOH . 
L 7 HOH A 50 550 47 HOH HOH . 
L 7 HOH A 51 551 29 HOH HOH . 
L 7 HOH A 52 552 128 HOH HOH . 
L 7 HOH A 53 553 30 HOH HOH . 
L 7 HOH A 54 554 3 HOH HOH . 
L 7 HOH A 55 555 42 HOH HOH . 
L 7 HOH A 56 556 92 HOH HOH . 
L 7 HOH A 57 557 10 HOH HOH . 
L 7 HOH A 58 558 71 HOH HOH . 
L 7 HOH A 59 559 36 HOH HOH . 
L 7 HOH A 60 560 76 HOH HOH . 
L 7 HOH A 61 561 117 HOH HOH . 
L 7 HOH A 62 562 99 HOH HOH . 
L 7 HOH A 63 563 20 HOH HOH . 
L 7 HOH A 64 564 148 HOH HOH . 
L 7 HOH A 65 565 39 HOH HOH . 
L 7 HOH A 66 566 12 HOH HOH . 
L 7 HOH A 67 567 50 HOH HOH . 
L 7 HOH A 68 568 35 HOH HOH . 
L 7 HOH A 69 569 33 HOH HOH . 
L 7 HOH A 70 570 239 HOH HOH . 
L 7 HOH A 71 571 15 HOH HOH . 
L 7 HOH A 72 572 13 HOH HOH . 
L 7 HOH A 73 573 189 HOH HOH . 
L 7 HOH A 74 574 78 HOH HOH . 
L 7 HOH A 75 575 106 HOH HOH . 
L 7 HOH A 76 576 18 HOH HOH . 
L 7 HOH A 77 577 31 HOH HOH . 
L 7 HOH A 78 578 45 HOH HOH . 
L 7 HOH A 79 579 49 HOH HOH . 
L 7 HOH A 80 580 70 HOH HOH . 
L 7 HOH A 81 581 64 HOH HOH . 
L 7 HOH A 82 582 163 HOH HOH . 
L 7 HOH A 83 583 98 HOH HOH . 
L 7 HOH A 84 584 27 HOH HOH . 
L 7 HOH A 85 585 14 HOH HOH . 
L 7 HOH A 86 586 114 HOH HOH . 
L 7 HOH A 87 587 222 HOH HOH . 
L 7 HOH A 88 588 46 HOH HOH . 
L 7 HOH A 89 589 108 HOH HOH . 
L 7 HOH A 90 590 143 HOH HOH . 
L 7 HOH A 91 591 19 HOH HOH . 
L 7 HOH A 92 592 53 HOH HOH . 
L 7 HOH A 93 593 101 HOH HOH . 
L 7 HOH A 94 594 63 HOH HOH . 
L 7 HOH A 95 595 28 HOH HOH . 
L 7 HOH A 96 596 67 HOH HOH . 
L 7 HOH A 97 597 81 HOH HOH . 
L 7 HOH A 98 598 17 HOH HOH . 
L 7 HOH A 99 599 136 HOH HOH . 
L 7 HOH A 100 600 149 HOH HOH . 
L 7 HOH A 101 601 80 HOH HOH . 
L 7 HOH A 102 602 11 HOH HOH . 
L 7 HOH A 103 603 188 HOH HOH . 
L 7 HOH A 104 604 22 HOH HOH . 
L 7 HOH A 105 605 169 HOH HOH . 
L 7 HOH A 106 606 96 HOH HOH . 
L 7 HOH A 107 607 240 HOH HOH . 
L 7 HOH A 108 608 37 HOH HOH . 
L 7 HOH A 109 609 26 HOH HOH . 
L 7 HOH A 110 610 197 HOH HOH . 
L 7 HOH A 111 611 202 HOH HOH . 
L 7 HOH A 112 612 85 HOH HOH . 
L 7 HOH A 113 613 162 HOH HOH . 
L 7 HOH A 114 614 54 HOH HOH . 
L 7 HOH A 115 615 84 HOH HOH . 
L 7 HOH A 116 616 86 HOH HOH . 
L 7 HOH A 117 617 74 HOH HOH . 
L 7 HOH A 118 618 201 HOH HOH . 
L 7 HOH A 119 619 38 HOH HOH . 
L 7 HOH A 120 620 132 HOH HOH . 
L 7 HOH A 121 621 178 HOH HOH . 
L 7 HOH A 122 622 193 HOH HOH . 
L 7 HOH A 123 623 79 HOH HOH . 
L 7 HOH A 124 624 90 HOH HOH . 
L 7 HOH A 125 625 180 HOH HOH . 
L 7 HOH A 126 626 135 HOH HOH . 
L 7 HOH A 127 627 32 HOH HOH . 
L 7 HOH A 128 628 88 HOH HOH . 
L 7 HOH A 129 629 110 HOH HOH . 
L 7 HOH A 130 630 124 HOH HOH . 
L 7 HOH A 131 631 107 HOH HOH . 
L 7 HOH A 132 632 34 HOH HOH . 
L 7 HOH A 133 633 82 HOH HOH . 
L 7 HOH A 134 634 119 HOH HOH . 
L 7 HOH A 135 635 204 HOH HOH . 
L 7 HOH A 136 636 213 HOH HOH . 
L 7 HOH A 137 637 231 HOH HOH . 
L 7 HOH A 138 638 238 HOH HOH . 
L 7 HOH A 139 639 137 HOH HOH . 
L 7 HOH A 140 640 236 HOH HOH . 
L 7 HOH A 141 641 224 HOH HOH . 
L 7 HOH A 142 642 181 HOH HOH . 
L 7 HOH A 143 643 62 HOH HOH . 
L 7 HOH A 144 644 187 HOH HOH . 
L 7 HOH A 145 645 159 HOH HOH . 
L 7 HOH A 146 646 118 HOH HOH . 
L 7 HOH A 147 647 69 HOH HOH . 
L 7 HOH A 148 648 142 HOH HOH . 
L 7 HOH A 149 649 206 HOH HOH . 
L 7 HOH A 150 650 60 HOH HOH . 
L 7 HOH A 151 651 109 HOH HOH . 
L 7 HOH A 152 652 61 HOH HOH . 
L 7 HOH A 153 653 83 HOH HOH . 
M 7 HOH D 1 301 21 HOH HOH . 
M 7 HOH D 2 302 95 HOH HOH . 
M 7 HOH D 3 303 9 HOH HOH . 
M 7 HOH D 4 304 241 HOH HOH . 
M 7 HOH D 5 305 52 HOH HOH . 
M 7 HOH D 6 306 145 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 -39.188 16.883 0.77 0.95 103.96 ? C1 GOL 402 A 1 
HETATM 2 O O1 GOL . . . D 4 -39.514 15.497 0.672 0.95 100.06 ? O1 GOL 402 A 1 
HETATM 3 C C2 GOL . . . D 4 -38.883 17.459 -0.613 0.95 94.12 ? C2 GOL 402 A 1 
HETATM 4 O O2 GOL . . . D 4 -38.529 18.848 -0.523 0.95 84.15 ? O2 GOL 402 A 1 
HETATM 5 C C3 GOL . . . D 4 -37.785 16.647 -1.303 0.95 96.01 ? C3 GOL 402 A 1 
HETATM 6 O O3 GOL . . . D 4 -38.14 15.267 -1.395 0.95 98.18 ? O3 GOL 402 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           323 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           6 
#