data_6H9X # _model_server_result.job_id RI35V6FHp3IF9QsWnV5hpw _model_server_result.datetime_utc '2024-11-14 15:49:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6h9x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 6H9X # _exptl.entry_id 6H9X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6H9X _cell.length_a 84.407 _cell.length_b 84.407 _cell.length_c 229.874 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6H9X _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 254 A ASP 254 1_555 H CA CA . A CA 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc2 A OE2 GLU 355 A GLU 355 1_555 F CA CA . A CA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.155 ? metalc ? metalc3 H CA CA . A CA 507 1_555 I O HOH . A HOH 628 5_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.796 ? metalc ? metalc4 H CA CA . A CA 507 1_555 I O HOH . A HOH 657 5_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? metalc ? metalc5 H CA CA . A CA 507 1_555 I O HOH . A HOH 676 5_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc6 H CA CA . A CA 507 1_555 I O HOH . A HOH 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc7 H CA CA . A CA 507 1_555 I O HOH . A HOH 784 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6H9X _atom_sites.fract_transf_matrix[1][1] 0.011847 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011847 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00435 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SSA A 1 501 500 SSA SSA . C 3 EDO A 1 502 1 EDO EDO . D 3 EDO A 1 503 2 EDO EDO . E 3 EDO A 1 504 3 EDO EDO . F 4 CA A 1 505 2 CA CA . G 4 CA A 1 506 5 CA CA . H 4 CA A 1 507 8 CA CA . I 5 HOH A 1 601 4 HOH HOH . I 5 HOH A 2 602 89 HOH HOH . I 5 HOH A 3 603 13 HOH HOH . I 5 HOH A 4 604 20 HOH HOH . I 5 HOH A 5 605 59 HOH HOH . I 5 HOH A 6 606 17 HOH HOH . I 5 HOH A 7 607 38 HOH HOH . I 5 HOH A 8 608 103 HOH HOH . I 5 HOH A 9 609 21 HOH HOH . I 5 HOH A 10 610 75 HOH HOH . I 5 HOH A 11 611 33 HOH HOH . I 5 HOH A 12 612 159 HOH HOH . I 5 HOH A 13 613 149 HOH HOH . I 5 HOH A 14 614 90 HOH HOH . I 5 HOH A 15 615 62 HOH HOH . I 5 HOH A 16 616 3 HOH HOH . I 5 HOH A 17 617 48 HOH HOH . I 5 HOH A 18 618 2 HOH HOH . I 5 HOH A 19 619 109 HOH HOH . I 5 HOH A 20 620 14 HOH HOH . I 5 HOH A 21 621 66 HOH HOH . I 5 HOH A 22 622 45 HOH HOH . I 5 HOH A 23 623 52 HOH HOH . I 5 HOH A 24 624 68 HOH HOH . I 5 HOH A 25 625 162 HOH HOH . I 5 HOH A 26 626 106 HOH HOH . I 5 HOH A 27 627 31 HOH HOH . I 5 HOH A 28 628 166 HOH HOH . I 5 HOH A 29 629 24 HOH HOH . I 5 HOH A 30 630 140 HOH HOH . I 5 HOH A 31 631 11 HOH HOH . I 5 HOH A 32 632 12 HOH HOH . I 5 HOH A 33 633 86 HOH HOH . I 5 HOH A 34 634 46 HOH HOH . I 5 HOH A 35 635 71 HOH HOH . I 5 HOH A 36 636 112 HOH HOH . I 5 HOH A 37 637 42 HOH HOH . I 5 HOH A 38 638 36 HOH HOH . I 5 HOH A 39 639 16 HOH HOH . I 5 HOH A 40 640 131 HOH HOH . I 5 HOH A 41 641 19 HOH HOH . I 5 HOH A 42 642 124 HOH HOH . I 5 HOH A 43 643 84 HOH HOH . I 5 HOH A 44 644 194 HOH HOH . I 5 HOH A 45 645 82 HOH HOH . I 5 HOH A 46 646 49 HOH HOH . I 5 HOH A 47 647 97 HOH HOH . I 5 HOH A 48 648 114 HOH HOH . I 5 HOH A 49 649 41 HOH HOH . I 5 HOH A 50 650 178 HOH HOH . I 5 HOH A 51 651 133 HOH HOH . I 5 HOH A 52 652 15 HOH HOH . I 5 HOH A 53 653 34 HOH HOH . I 5 HOH A 54 654 146 HOH HOH . I 5 HOH A 55 655 23 HOH HOH . I 5 HOH A 56 656 134 HOH HOH . I 5 HOH A 57 657 145 HOH HOH . I 5 HOH A 58 658 158 HOH HOH . I 5 HOH A 59 659 161 HOH HOH . I 5 HOH A 60 660 173 HOH HOH . I 5 HOH A 61 661 18 HOH HOH . I 5 HOH A 62 662 25 HOH HOH . I 5 HOH A 63 663 138 HOH HOH . I 5 HOH A 64 664 9 HOH HOH . I 5 HOH A 65 665 56 HOH HOH . I 5 HOH A 66 666 55 HOH HOH . I 5 HOH A 67 667 70 HOH HOH . I 5 HOH A 68 668 8 HOH HOH . I 5 HOH A 69 669 5 HOH HOH . I 5 HOH A 70 670 22 HOH HOH . I 5 HOH A 71 671 129 HOH HOH . I 5 HOH A 72 672 156 HOH HOH . I 5 HOH A 73 673 81 HOH HOH . I 5 HOH A 74 674 99 HOH HOH . I 5 HOH A 75 675 105 HOH HOH . I 5 HOH A 76 676 143 HOH HOH . I 5 HOH A 77 677 113 HOH HOH . I 5 HOH A 78 678 78 HOH HOH . I 5 HOH A 79 679 6 HOH HOH . I 5 HOH A 80 680 53 HOH HOH . I 5 HOH A 81 681 7 HOH HOH . I 5 HOH A 82 682 150 HOH HOH . I 5 HOH A 83 683 73 HOH HOH . I 5 HOH A 84 684 186 HOH HOH . I 5 HOH A 85 685 28 HOH HOH . I 5 HOH A 86 686 69 HOH HOH . I 5 HOH A 87 687 65 HOH HOH . I 5 HOH A 88 688 72 HOH HOH . I 5 HOH A 89 689 115 HOH HOH . I 5 HOH A 90 690 117 HOH HOH . I 5 HOH A 91 691 30 HOH HOH . I 5 HOH A 92 692 95 HOH HOH . I 5 HOH A 93 693 98 HOH HOH . I 5 HOH A 94 694 60 HOH HOH . I 5 HOH A 95 695 169 HOH HOH . I 5 HOH A 96 696 127 HOH HOH . I 5 HOH A 97 697 93 HOH HOH . I 5 HOH A 98 698 118 HOH HOH . I 5 HOH A 99 699 67 HOH HOH . I 5 HOH A 100 700 54 HOH HOH . I 5 HOH A 101 701 39 HOH HOH . I 5 HOH A 102 702 57 HOH HOH . I 5 HOH A 103 703 175 HOH HOH . I 5 HOH A 104 704 101 HOH HOH . I 5 HOH A 105 705 32 HOH HOH . I 5 HOH A 106 706 64 HOH HOH . I 5 HOH A 107 707 154 HOH HOH . I 5 HOH A 108 708 132 HOH HOH . I 5 HOH A 109 709 151 HOH HOH . I 5 HOH A 110 710 91 HOH HOH . I 5 HOH A 111 711 76 HOH HOH . I 5 HOH A 112 712 155 HOH HOH . I 5 HOH A 113 713 29 HOH HOH . I 5 HOH A 114 714 74 HOH HOH . I 5 HOH A 115 715 26 HOH HOH . I 5 HOH A 116 716 120 HOH HOH . I 5 HOH A 117 717 83 HOH HOH . I 5 HOH A 118 718 137 HOH HOH . I 5 HOH A 119 719 58 HOH HOH . I 5 HOH A 120 720 108 HOH HOH . I 5 HOH A 121 721 102 HOH HOH . I 5 HOH A 122 722 192 HOH HOH . I 5 HOH A 123 723 119 HOH HOH . I 5 HOH A 124 724 107 HOH HOH . I 5 HOH A 125 725 63 HOH HOH . I 5 HOH A 126 726 160 HOH HOH . I 5 HOH A 127 727 188 HOH HOH . I 5 HOH A 128 728 121 HOH HOH . I 5 HOH A 129 729 27 HOH HOH . I 5 HOH A 130 730 163 HOH HOH . I 5 HOH A 131 731 111 HOH HOH . I 5 HOH A 132 732 128 HOH HOH . I 5 HOH A 133 733 148 HOH HOH . I 5 HOH A 134 734 50 HOH HOH . I 5 HOH A 135 735 96 HOH HOH . I 5 HOH A 136 736 157 HOH HOH . I 5 HOH A 137 737 10 HOH HOH . I 5 HOH A 138 738 147 HOH HOH . I 5 HOH A 139 739 94 HOH HOH . I 5 HOH A 140 740 37 HOH HOH . I 5 HOH A 141 741 1 HOH HOH . I 5 HOH A 142 742 116 HOH HOH . I 5 HOH A 143 743 184 HOH HOH . I 5 HOH A 144 744 100 HOH HOH . I 5 HOH A 145 745 43 HOH HOH . I 5 HOH A 146 746 165 HOH HOH . I 5 HOH A 147 747 167 HOH HOH . I 5 HOH A 148 748 171 HOH HOH . I 5 HOH A 149 749 153 HOH HOH . I 5 HOH A 150 750 164 HOH HOH . I 5 HOH A 151 751 44 HOH HOH . I 5 HOH A 152 752 35 HOH HOH . I 5 HOH A 153 753 47 HOH HOH . I 5 HOH A 154 754 141 HOH HOH . I 5 HOH A 155 755 51 HOH HOH . I 5 HOH A 156 756 139 HOH HOH . I 5 HOH A 157 757 88 HOH HOH . I 5 HOH A 158 758 176 HOH HOH . I 5 HOH A 159 759 142 HOH HOH . I 5 HOH A 160 760 193 HOH HOH . I 5 HOH A 161 761 180 HOH HOH . I 5 HOH A 162 762 183 HOH HOH . I 5 HOH A 163 763 181 HOH HOH . I 5 HOH A 164 764 92 HOH HOH . I 5 HOH A 165 765 191 HOH HOH . I 5 HOH A 166 766 79 HOH HOH . I 5 HOH A 167 767 80 HOH HOH . I 5 HOH A 168 768 87 HOH HOH . I 5 HOH A 169 769 85 HOH HOH . I 5 HOH A 170 770 40 HOH HOH . I 5 HOH A 171 771 172 HOH HOH . I 5 HOH A 172 772 61 HOH HOH . I 5 HOH A 173 773 122 HOH HOH . I 5 HOH A 174 774 104 HOH HOH . I 5 HOH A 175 775 110 HOH HOH . I 5 HOH A 176 776 136 HOH HOH . I 5 HOH A 177 777 168 HOH HOH . I 5 HOH A 178 778 174 HOH HOH . I 5 HOH A 179 779 135 HOH HOH . I 5 HOH A 180 780 77 HOH HOH . I 5 HOH A 181 781 179 HOH HOH . I 5 HOH A 182 782 177 HOH HOH . I 5 HOH A 183 783 125 HOH HOH . I 5 HOH A 184 784 152 HOH HOH . I 5 HOH A 185 785 123 HOH HOH . I 5 HOH A 186 786 185 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 3 -12.285 -24.156 7.322 1 42.52 ? C1 EDO 502 A 1 HETATM 2 O O1 EDO . . . C 3 -12.569 -25.489 6.913 1 40.41 ? O1 EDO 502 A 1 HETATM 3 C C2 EDO . . . C 3 -12.585 -23.145 6.155 1 43.15 ? C2 EDO 502 A 1 HETATM 4 O O2 EDO . . . C 3 -11.524 -23.183 5.174 1 40.84 ? O2 EDO 502 A 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 368 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #