data_6HA4 # _model_server_result.job_id qF5sf9nMZ8-aAjcwgzk_vA _model_server_result.datetime_utc '2024-11-14 09:11:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ha4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6HA4 # _exptl.entry_id 6HA4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.75 _cell.angle_gamma 90 _cell.entry_id 6HA4 _cell.length_a 22.719 _cell.length_b 37.587 _cell.length_c 29.956 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HA4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 7 1_555 A SG CYS 36 A CYS 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 A SG CYS 14 A CYS 14 1_555 A SG CYS 43 A CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 28 A CYS 28 1_555 A SG CYS 54 A CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 84 n n C1 C2 GOL sing 85 n n C1 H11 GOL sing 86 n n C1 H12 GOL sing 87 n n O1 HO1 GOL sing 88 n n C2 O2 GOL sing 89 n n C2 C3 GOL sing 90 n n C2 H2 GOL sing 91 n n O2 HO2 GOL sing 92 n n C3 O3 GOL sing 93 n n C3 H31 GOL sing 94 n n C3 H32 GOL sing 95 n n O3 HO3 GOL sing 96 n n # _atom_sites.entry_id 6HA4 _atom_sites.fract_transf_matrix[1][1] 0.044016 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.017561 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026605 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.035941 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 201 201 GOL GOL . C 3 T3Y A 1 202 1 T3Y T3Y . D 4 HOH A 1 301 28 HOH HOH . D 4 HOH A 2 302 13 HOH HOH . D 4 HOH A 3 303 48 HOH HOH . D 4 HOH A 4 304 2 HOH HOH . D 4 HOH A 5 305 14 HOH HOH . D 4 HOH A 6 306 19 HOH HOH . D 4 HOH A 7 307 26 HOH HOH . D 4 HOH A 8 308 10 HOH HOH . D 4 HOH A 9 309 30 HOH HOH . D 4 HOH A 10 310 34 HOH HOH . D 4 HOH A 11 311 1 HOH HOH . D 4 HOH A 12 312 3 HOH HOH . D 4 HOH A 13 313 47 HOH HOH . D 4 HOH A 14 314 50 HOH HOH . D 4 HOH A 15 315 24 HOH HOH . D 4 HOH A 16 316 52 HOH HOH . D 4 HOH A 17 317 23 HOH HOH . D 4 HOH A 18 318 6 HOH HOH . D 4 HOH A 19 319 15 HOH HOH . D 4 HOH A 20 320 3 HOH HOH . D 4 HOH A 21 321 36 HOH HOH . D 4 HOH A 22 322 7 HOH HOH . D 4 HOH A 23 323 32 HOH HOH . D 4 HOH A 24 324 11 HOH HOH . D 4 HOH A 25 325 40 HOH HOH . D 4 HOH A 26 326 8 HOH HOH . D 4 HOH A 27 327 4 HOH HOH . D 4 HOH A 28 328 2 HOH HOH . D 4 HOH A 29 329 1 HOH HOH . D 4 HOH A 30 330 20 HOH HOH . D 4 HOH A 31 331 29 HOH HOH . D 4 HOH A 32 332 45 HOH HOH . D 4 HOH A 33 333 25 HOH HOH . D 4 HOH A 34 334 12 HOH HOH . D 4 HOH A 35 335 21 HOH HOH . D 4 HOH A 36 336 18 HOH HOH . D 4 HOH A 37 337 42 HOH HOH . D 4 HOH A 38 338 22 HOH HOH . D 4 HOH A 39 339 5 HOH HOH . D 4 HOH A 40 340 54 HOH HOH . D 4 HOH A 41 341 6 HOH HOH . D 4 HOH A 42 342 31 HOH HOH . D 4 HOH A 43 343 4 HOH HOH . D 4 HOH A 44 344 27 HOH HOH . D 4 HOH A 45 345 37 HOH HOH . D 4 HOH A 46 346 5 HOH HOH . D 4 HOH A 47 347 53 HOH HOH . D 4 HOH A 48 348 16 HOH HOH . D 4 HOH A 49 349 43 HOH HOH . D 4 HOH A 50 350 44 HOH HOH . D 4 HOH A 51 351 41 HOH HOH . D 4 HOH A 52 352 35 HOH HOH . D 4 HOH A 53 353 49 HOH HOH . D 4 HOH A 54 354 33 HOH HOH . D 4 HOH A 55 355 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 6.907 7.813 47.616 1 38.02 ? C1 GOL 201 A 1 HETATM 2 O O1 GOL . . . B 2 5.553 7.499 47.92 1 31.47 ? O1 GOL 201 A 1 HETATM 3 C C2 GOL . . . B 2 7.114 9.309 47.547 1 42.1 ? C2 GOL 201 A 1 HETATM 4 O O2 GOL . . . B 2 5.949 9.981 48.037 1 44.15 ? O2 GOL 201 A 1 HETATM 5 C C3 GOL . . . B 2 8.314 9.719 48.367 1 44.25 ? C3 GOL 201 A 1 HETATM 6 O O3 GOL . . . B 2 8.876 10.922 47.864 1 45.62 ? O3 GOL 201 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #