data_6HA4
#
_model_server_result.job_id            yQD8snlEHrvjjF_pFEnZjQ 
_model_server_result.datetime_utc      '2024-11-27 02:06:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ha4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":202}' 
#
_entry.id    6HA4 
#
_exptl.entry_id    6HA4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              744.741 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '25,26,27,28-tetrahydroxypentacyclo[19.3.1.1~3,7~.1~9,13~.1~15,19~]octacosa-1(25),3(28),4,6,9(27),10,12,15(26),16,18,21,23-dodecaene-5,11,17,23-tetrasulfonic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          111.75 
_cell.angle_gamma         90 
_cell.entry_id            6HA4 
_cell.length_a            22.719 
_cell.length_b            37.587 
_cell.length_c            29.956 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6HA4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 7 A CYS 7 1_555 A SG CYS 36 A CYS 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf2 A SG CYS 14 A CYS 14 1_555 A SG CYS 43 A CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 A SG CYS 28 A CYS 28 1_555 A SG CYS 54 A CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
#
_chem_comp.formula           'C28 H24 O16 S4' 
_chem_comp.formula_weight    744.741 
_chem_comp.id                T3Y 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '25,26,27,28-tetrahydroxypentacyclo[19.3.1.1~3,7~.1~9,13~.1~15,19~]octacosa-1(25),3(28),4,6,9(27),10,12,15(26),16,18,21,23-dodecaene-5,11,17,23-tetrasulfonic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     5,11,17,23-tetra-sulphonato-calix[4]arene-25,26,27,28-tetrol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S1 O3 T3Y sing 197 n n 
O3 HO3 T3Y sing 198 n n 
O2 S1 T3Y doub 199 n n 
S1 O1 T3Y doub 200 n n 
S1 C1 T3Y sing 201 n n 
C1 C2 T3Y doub 202 n y 
C1 C24 T3Y sing 203 n y 
C24 C23 T3Y doub 204 n y 
C24 H24 T3Y sing 205 n n 
C23 C25 T3Y sing 206 n y 
C23 C22 T3Y sing 207 n n 
C22 C21 T3Y sing 208 n n 
C22 H22 T3Y sing 209 n n 
C22 H22A T3Y sing 210 n n 
C2 C3 T3Y sing 211 n y 
C2 H2 T3Y sing 212 n n 
C3 C4 T3Y sing 213 n n 
C3 C25 T3Y doub 214 n y 
C25 O13 T3Y sing 215 n n 
O13 HO13 T3Y sing 216 n n 
C4 C5 T3Y sing 217 n n 
C4 H4 T3Y sing 218 n n 
C4 H4A T3Y sing 219 n n 
C5 C6 T3Y doub 220 n y 
C5 C28 T3Y sing 221 n y 
C6 C7 T3Y sing 222 n y 
C6 H6 T3Y sing 223 n n 
C7 S2 T3Y sing 224 n n 
C7 C8 T3Y doub 225 n y 
O6 S2 T3Y doub 226 n n 
S2 O4 T3Y doub 227 n n 
S2 O5 T3Y sing 228 n n 
O5 HO5 T3Y sing 229 n n 
C9 C8 T3Y sing 230 n y 
C8 H8 T3Y sing 231 n n 
O16 C28 T3Y sing 232 n n 
C28 C9 T3Y doub 233 n y 
O16 HO16 T3Y sing 234 n n 
C9 C10 T3Y sing 235 n n 
C10 C11 T3Y sing 236 n n 
C10 H10 T3Y sing 237 n n 
C10 H10A T3Y sing 238 n n 
C27 C11 T3Y doub 239 n y 
C11 C12 T3Y sing 240 n y 
C12 C13 T3Y doub 241 n y 
C12 H12 T3Y sing 242 n n 
C14 C13 T3Y sing 243 n y 
C13 S3 T3Y sing 244 n n 
O9 S3 T3Y doub 245 n n 
S3 O7 T3Y doub 246 n n 
S3 O8 T3Y sing 247 n n 
O8 HO8 T3Y sing 248 n n 
C15 C14 T3Y doub 249 n y 
C14 H14 T3Y sing 250 n n 
O15 C27 T3Y sing 251 n n 
C27 C15 T3Y sing 252 n y 
O15 HO15 T3Y sing 253 n n 
C16 C15 T3Y sing 254 n n 
C17 C16 T3Y sing 255 n n 
C16 H16 T3Y sing 256 n n 
C16 H16A T3Y sing 257 n n 
C26 C17 T3Y doub 258 n y 
C17 C18 T3Y sing 259 n y 
C19 C18 T3Y doub 260 n y 
C18 H18 T3Y sing 261 n n 
C21 C26 T3Y sing 262 n y 
O14 C26 T3Y sing 263 n n 
O14 HO14 T3Y sing 264 n n 
C21 C20 T3Y doub 265 n y 
C20 C19 T3Y sing 266 n y 
C20 H20 T3Y sing 267 n n 
C19 S4 T3Y sing 268 n n 
O11 S4 T3Y doub 269 n n 
S4 O12 T3Y doub 270 n n 
S4 O10 T3Y sing 271 n n 
O10 HO10 T3Y sing 272 n n 
#
_atom_sites.entry_id                     6HA4 
_atom_sites.fract_transf_matrix[1][1]    0.044016 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.017561 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.026605 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.035941 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 201 201 GOL GOL . 
C 3 T3Y A 1 202 1 T3Y T3Y . 
D 4 HOH A 1 301 28 HOH HOH . 
D 4 HOH A 2 302 13 HOH HOH . 
D 4 HOH A 3 303 48 HOH HOH . 
D 4 HOH A 4 304 2 HOH HOH . 
D 4 HOH A 5 305 14 HOH HOH . 
D 4 HOH A 6 306 19 HOH HOH . 
D 4 HOH A 7 307 26 HOH HOH . 
D 4 HOH A 8 308 10 HOH HOH . 
D 4 HOH A 9 309 30 HOH HOH . 
D 4 HOH A 10 310 34 HOH HOH . 
D 4 HOH A 11 311 1 HOH HOH . 
D 4 HOH A 12 312 3 HOH HOH . 
D 4 HOH A 13 313 47 HOH HOH . 
D 4 HOH A 14 314 50 HOH HOH . 
D 4 HOH A 15 315 24 HOH HOH . 
D 4 HOH A 16 316 52 HOH HOH . 
D 4 HOH A 17 317 23 HOH HOH . 
D 4 HOH A 18 318 6 HOH HOH . 
D 4 HOH A 19 319 15 HOH HOH . 
D 4 HOH A 20 320 3 HOH HOH . 
D 4 HOH A 21 321 36 HOH HOH . 
D 4 HOH A 22 322 7 HOH HOH . 
D 4 HOH A 23 323 32 HOH HOH . 
D 4 HOH A 24 324 11 HOH HOH . 
D 4 HOH A 25 325 40 HOH HOH . 
D 4 HOH A 26 326 8 HOH HOH . 
D 4 HOH A 27 327 4 HOH HOH . 
D 4 HOH A 28 328 2 HOH HOH . 
D 4 HOH A 29 329 1 HOH HOH . 
D 4 HOH A 30 330 20 HOH HOH . 
D 4 HOH A 31 331 29 HOH HOH . 
D 4 HOH A 32 332 45 HOH HOH . 
D 4 HOH A 33 333 25 HOH HOH . 
D 4 HOH A 34 334 12 HOH HOH . 
D 4 HOH A 35 335 21 HOH HOH . 
D 4 HOH A 36 336 18 HOH HOH . 
D 4 HOH A 37 337 42 HOH HOH . 
D 4 HOH A 38 338 22 HOH HOH . 
D 4 HOH A 39 339 5 HOH HOH . 
D 4 HOH A 40 340 54 HOH HOH . 
D 4 HOH A 41 341 6 HOH HOH . 
D 4 HOH A 42 342 31 HOH HOH . 
D 4 HOH A 43 343 4 HOH HOH . 
D 4 HOH A 44 344 27 HOH HOH . 
D 4 HOH A 45 345 37 HOH HOH . 
D 4 HOH A 46 346 5 HOH HOH . 
D 4 HOH A 47 347 53 HOH HOH . 
D 4 HOH A 48 348 16 HOH HOH . 
D 4 HOH A 49 349 43 HOH HOH . 
D 4 HOH A 50 350 44 HOH HOH . 
D 4 HOH A 51 351 41 HOH HOH . 
D 4 HOH A 52 352 35 HOH HOH . 
D 4 HOH A 53 353 49 HOH HOH . 
D 4 HOH A 54 354 33 HOH HOH . 
D 4 HOH A 55 355 9 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O3 T3Y . . . C 3 3.904 1.76 20.521 1 20.87 ? O3 T3Y 202 A 1 
HETATM 2 S S1 T3Y . . . C 3 2.583 2.257 20.065 1 17.06 ? S1 T3Y 202 A 1 
HETATM 3 O O1 T3Y . . . C 3 2.27 3.534 20.743 1 18.03 ? O1 T3Y 202 A 1 
HETATM 4 O O2 T3Y . . . C 3 1.569 1.249 20.433 1 18.35 ? O2 T3Y 202 A 1 
HETATM 5 C C1 T3Y . . . C 3 2.644 2.489 18.468 1 13.79 ? C1 T3Y 202 A 1 
HETATM 6 C C24 T3Y . . . C 3 2.258 1.473 17.579 1 13.95 ? C24 T3Y 202 A 1 
HETATM 7 C C23 T3Y . . . C 3 2.369 1.617 16.19 1 14.01 ? C23 T3Y 202 A 1 
HETATM 8 C C22 T3Y . . . C 3 1.946 0.49 15.261 1 16.23 ? C22 T3Y 202 A 1 
HETATM 9 C C2 T3Y . . . C 3 3.177 3.692 17.986 1 15.01 ? C2 T3Y 202 A 1 
HETATM 10 C C3 T3Y . . . C 3 3.35 3.929 16.626 1 16.76 ? C3 T3Y 202 A 1 
HETATM 11 C C25 T3Y . . . C 3 2.978 2.866 15.659 1 15.46 ? C25 T3Y 202 A 1 
HETATM 12 O O13 T3Y . . . C 3 3.176 3.062 14.328 1 17.33 ? O13 T3Y 202 A 1 
HETATM 13 C C4 T3Y . . . C 3 3.916 5.245 16.142 1 19.54 ? C4 T3Y 202 A 1 
HETATM 14 C C5 T3Y . . . C 3 2.789 6.155 15.695 1 20.41 ? C5 T3Y 202 A 1 
HETATM 15 C C6 T3Y . . . C 3 2.09 6.908 16.633 1 23.85 ? C6 T3Y 202 A 1 
HETATM 16 C C7 T3Y . . . C 3 1.028 7.734 16.257 1 27.01 ? C7 T3Y 202 A 1 
HETATM 17 S S2 T3Y . . . C 3 0.286 8.571 17.404 1 36.27 ? S2 T3Y 202 A 1 
HETATM 18 O O4 T3Y . . . C 3 -0.285 7.636 18.399 1 39.53 ? O4 T3Y 202 A 1 
HETATM 19 O O5 T3Y . . . C 3 1.27 9.442 18.087 1 36.91 ? O5 T3Y 202 A 1 
HETATM 20 O O6 T3Y . . . C 3 -0.801 9.394 16.833 1 36.21 ? O6 T3Y 202 A 1 
HETATM 21 C C8 T3Y . . . C 3 0.638 7.863 14.916 1 22.8 ? C8 T3Y 202 A 1 
HETATM 22 C C28 T3Y . . . C 3 2.38 6.234 14.268 1 19.74 ? C28 T3Y 202 A 1 
HETATM 23 O O16 T3Y . . . C 3 3.02 5.526 13.303 1 21.82 ? O16 T3Y 202 A 1 
HETATM 24 C C9 T3Y . . . C 3 1.257 7.132 13.903 1 19.25 ? C9 T3Y 202 A 1 
HETATM 25 C C10 T3Y . . . C 3 0.819 7.251 12.454 1 20.49 ? C10 T3Y 202 A 1 
HETATM 26 C C11 T3Y . . . C 3 -0.302 6.273 12.158 1 19.1 ? C11 T3Y 202 A 1 
HETATM 27 C C12 T3Y . . . C 3 -1.619 6.724 12.141 1 18.84 ? C12 T3Y 202 A 1 
HETATM 28 C C13 T3Y . . . C 3 -2.686 5.849 11.92 1 17.07 ? C13 T3Y 202 A 1 
HETATM 29 S S3 T3Y . . . C 3 -4.183 6.417 11.886 1 21.5 ? S3 T3Y 202 A 1 
HETATM 30 O O7 T3Y . . . C 3 -4.174 7.886 11.695 1 25.28 ? O7 T3Y 202 A 1 
HETATM 31 O O8 T3Y . . . C 3 -4.828 6.083 13.169 1 25.24 ? O8 T3Y 202 A 1 
HETATM 32 O O9 T3Y . . . C 3 -4.931 5.777 10.78 1 22.87 ? O9 T3Y 202 A 1 
HETATM 33 C C14 T3Y . . . C 3 -2.475 4.48 11.732 1 18.42 ? C14 T3Y 202 A 1 
HETATM 34 C C27 T3Y . . . C 3 -0.032 4.835 11.903 1 17.51 ? C27 T3Y 202 A 1 
HETATM 35 O O15 T3Y . . . C 3 1.236 4.355 11.814 1 21.47 ? O15 T3Y 202 A 1 
HETATM 36 C C15 T3Y . . . C 3 -1.197 3.927 11.721 1 16.24 ? C15 T3Y 202 A 1 
HETATM 37 C C16 T3Y . . . C 3 -0.999 2.446 11.459 1 17.28 ? C16 T3Y 202 A 1 
HETATM 38 C C17 T3Y . . . C 3 -0.861 1.682 12.763 1 16.55 ? C17 T3Y 202 A 1 
HETATM 39 C C18 T3Y . . . C 3 -1.974 1.143 13.419 1 14.79 ? C18 T3Y 202 A 1 
HETATM 40 C C26 T3Y . . . C 3 0.485 1.436 13.331 1 15.6 ? C26 T3Y 202 A 1 
HETATM 41 O O14 T3Y . . . C 3 1.6 1.902 12.704 1 17.8 ? O14 T3Y 202 A 1 
HETATM 42 C C21 T3Y . . . C 3 0.578 0.757 14.651 1 14.29 ? C21 T3Y 202 A 1 
HETATM 43 C C20 T3Y . . . C 3 -0.591 0.241 15.219 1 15.62 ? C20 T3Y 202 A 1 
HETATM 44 C C19 T3Y . . . C 3 -1.858 0.469 14.65 1 15.13 ? C19 T3Y 202 A 1 
HETATM 45 S S4 T3Y . . . C 3 -3.194 -0.097 15.361 1 16.31 ? S4 T3Y 202 A 1 
HETATM 46 O O11 T3Y . . . C 3 -2.827 -0.998 16.475 1 15.85 ? O11 T3Y 202 A 1 
HETATM 47 O O10 T3Y . . . C 3 -3.98 -0.874 14.374 1 19.88 ? O10 T3Y 202 A 1 
HETATM 48 O O12 T3Y . . . C 3 -3.981 1.039 15.888 1 18.63 ? O12 T3Y 202 A 1 
#
_model_server_stats.io_time_ms              33 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           381 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           48 
#