data_6HAC # _model_server_result.job_id 5ln1LltUgwe6vMuq5oRWcA _model_server_result.datetime_utc '2024-11-07 15:31:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hac # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 6HAC # _exptl.entry_id 6HAC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6HAC _cell.length_a 136.985 _cell.length_b 136.985 _cell.length_c 117.317 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HAC _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_544 x,-y-1/2,-z-3/4 1 0 0 0 -1 0 0 0 -1 0 -68.4925 -87.98775 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 176 A CYS 176 1_555 B FE FE9 . A FE9 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc2 A O PRO 325 A PRO 325 1_555 F NA NA . A NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.656 ? metalc ? metalc3 B FE FE9 . A FE9 401 1_555 G O HOH . A HOH 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc4 F NA NA . A NA 405 1_555 G O HOH . A HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.781 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 236 n n C1 C2 GOL sing 237 n n C1 H11 GOL sing 238 n n C1 H12 GOL sing 239 n n O1 HO1 GOL sing 240 n n C2 O2 GOL sing 241 n n C2 C3 GOL sing 242 n n C2 H2 GOL sing 243 n n O2 HO2 GOL sing 244 n n C3 O3 GOL sing 245 n n C3 H31 GOL sing 246 n n C3 H32 GOL sing 247 n n O3 HO3 GOL sing 248 n n # _atom_sites.entry_id 6HAC _atom_sites.fract_transf_matrix[1][1] 0.0073 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0073 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008524 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE9 A 1 401 401 FE9 FE9 . C 3 1PE A 1 402 1 1PE 1PE . D 4 GOL A 1 403 1 GOL GOL . E 4 GOL A 1 404 2 GOL GOL . F 5 NA A 1 405 1 NA NA . G 6 HOH A 1 501 5 HOH HOH . G 6 HOH A 2 502 52 HOH HOH . G 6 HOH A 3 503 19 HOH HOH . G 6 HOH A 4 504 15 HOH HOH . G 6 HOH A 5 505 63 HOH HOH . G 6 HOH A 6 506 68 HOH HOH . G 6 HOH A 7 507 11 HOH HOH . G 6 HOH A 8 508 18 HOH HOH . G 6 HOH A 9 509 57 HOH HOH . G 6 HOH A 10 510 4 HOH HOH . G 6 HOH A 11 511 71 HOH HOH . G 6 HOH A 12 512 26 HOH HOH . G 6 HOH A 13 513 53 HOH HOH . G 6 HOH A 14 514 49 HOH HOH . G 6 HOH A 15 515 74 HOH HOH . G 6 HOH A 16 516 110 HOH HOH . G 6 HOH A 17 517 16 HOH HOH . G 6 HOH A 18 518 35 HOH HOH . G 6 HOH A 19 519 45 HOH HOH . G 6 HOH A 20 520 66 HOH HOH . G 6 HOH A 21 521 17 HOH HOH . G 6 HOH A 22 522 62 HOH HOH . G 6 HOH A 23 523 54 HOH HOH . G 6 HOH A 24 524 10 HOH HOH . G 6 HOH A 25 525 85 HOH HOH . G 6 HOH A 26 526 21 HOH HOH . G 6 HOH A 27 527 73 HOH HOH . G 6 HOH A 28 528 70 HOH HOH . G 6 HOH A 29 529 7 HOH HOH . G 6 HOH A 30 530 102 HOH HOH . G 6 HOH A 31 531 67 HOH HOH . G 6 HOH A 32 532 60 HOH HOH . G 6 HOH A 33 533 88 HOH HOH . G 6 HOH A 34 534 9 HOH HOH . G 6 HOH A 35 535 90 HOH HOH . G 6 HOH A 36 536 106 HOH HOH . G 6 HOH A 37 537 55 HOH HOH . G 6 HOH A 38 538 22 HOH HOH . G 6 HOH A 39 539 36 HOH HOH . G 6 HOH A 40 540 59 HOH HOH . G 6 HOH A 41 541 97 HOH HOH . G 6 HOH A 42 542 6 HOH HOH . G 6 HOH A 43 543 14 HOH HOH . G 6 HOH A 44 544 78 HOH HOH . G 6 HOH A 45 545 81 HOH HOH . G 6 HOH A 46 546 96 HOH HOH . G 6 HOH A 47 547 3 HOH HOH . G 6 HOH A 48 548 13 HOH HOH . G 6 HOH A 49 549 12 HOH HOH . G 6 HOH A 50 550 47 HOH HOH . G 6 HOH A 51 551 37 HOH HOH . G 6 HOH A 52 552 46 HOH HOH . G 6 HOH A 53 553 30 HOH HOH . G 6 HOH A 54 554 31 HOH HOH . G 6 HOH A 55 555 43 HOH HOH . G 6 HOH A 56 556 28 HOH HOH . G 6 HOH A 57 557 51 HOH HOH . G 6 HOH A 58 558 1 HOH HOH . G 6 HOH A 59 559 89 HOH HOH . G 6 HOH A 60 560 108 HOH HOH . G 6 HOH A 61 561 64 HOH HOH . G 6 HOH A 62 562 8 HOH HOH . G 6 HOH A 63 563 33 HOH HOH . G 6 HOH A 64 564 20 HOH HOH . G 6 HOH A 65 565 34 HOH HOH . G 6 HOH A 66 566 65 HOH HOH . G 6 HOH A 67 567 32 HOH HOH . G 6 HOH A 68 568 44 HOH HOH . G 6 HOH A 69 569 82 HOH HOH . G 6 HOH A 70 570 27 HOH HOH . G 6 HOH A 71 571 41 HOH HOH . G 6 HOH A 72 572 69 HOH HOH . G 6 HOH A 73 573 84 HOH HOH . G 6 HOH A 74 574 80 HOH HOH . G 6 HOH A 75 575 77 HOH HOH . G 6 HOH A 76 576 39 HOH HOH . G 6 HOH A 77 577 107 HOH HOH . G 6 HOH A 78 578 92 HOH HOH . G 6 HOH A 79 579 2 HOH HOH . G 6 HOH A 80 580 75 HOH HOH . G 6 HOH A 81 581 98 HOH HOH . G 6 HOH A 82 582 99 HOH HOH . G 6 HOH A 83 583 24 HOH HOH . G 6 HOH A 84 584 76 HOH HOH . G 6 HOH A 85 585 101 HOH HOH . G 6 HOH A 86 586 93 HOH HOH . G 6 HOH A 87 587 25 HOH HOH . G 6 HOH A 88 588 40 HOH HOH . G 6 HOH A 89 589 83 HOH HOH . G 6 HOH A 90 590 100 HOH HOH . G 6 HOH A 91 591 86 HOH HOH . G 6 HOH A 92 592 103 HOH HOH . G 6 HOH A 93 593 79 HOH HOH . G 6 HOH A 94 594 50 HOH HOH . G 6 HOH A 95 595 56 HOH HOH . G 6 HOH A 96 596 38 HOH HOH . G 6 HOH A 97 597 72 HOH HOH . G 6 HOH A 98 598 94 HOH HOH . G 6 HOH A 99 599 91 HOH HOH . G 6 HOH A 100 600 61 HOH HOH . G 6 HOH A 101 601 109 HOH HOH . G 6 HOH A 102 602 105 HOH HOH . G 6 HOH A 103 603 87 HOH HOH . G 6 HOH A 104 604 42 HOH HOH . G 6 HOH A 105 605 104 HOH HOH . G 6 HOH A 106 606 95 HOH HOH . G 6 HOH A 107 607 48 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 10.633 -64.744 -8.257 1 84.08 ? C1 GOL 403 A 1 HETATM 2 O O1 GOL . . . D 4 10.924 -63.419 -7.775 1 82.43 ? O1 GOL 403 A 1 HETATM 3 C C2 GOL . . . D 4 11.688 -65.211 -9.271 1 85.23 ? C2 GOL 403 A 1 HETATM 4 O O2 GOL . . . D 4 12.792 -65.829 -8.589 1 85.53 ? O2 GOL 403 A 1 HETATM 5 C C3 GOL . . . D 4 11.097 -66.199 -10.28 1 82.68 ? C3 GOL 403 A 1 HETATM 6 O O3 GOL . . . D 4 10.665 -65.52 -11.467 1 78.52 ? O3 GOL 403 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 6 #