data_6HAH # _model_server_result.job_id LiOu6zHJNMxPefyebY2eAw _model_server_result.datetime_utc '2024-11-18 07:23:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hah # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":103}' # _entry.id 6HAH # _exptl.entry_id 6HAH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.09 _cell.angle_gamma 90 _cell.entry_id 6HAH _cell.length_a 24.739 _cell.length_b 38.59 _cell.length_c 29.23 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HAH _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 7 1_555 A SG CYS 36 A CYS 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf2 A SG CYS 14 A CYS 14 1_555 A SG CYS 43 A CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf3 A SG CYS 28 A CYS 28 1_555 A SG CYS 54 A CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc1 A O ASN 33 A ASN 33 1_555 E NA NA . A NA 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? metalc ? metalc2 A OD1 ASP 53 A ASP 53 1_555 E NA NA . A NA 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc3 A O CYS 54 A CYS 54 1_555 E NA NA . A NA 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc4 A OD1 ASP 55 A ASP 55 1_555 E NA NA . A NA 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? metalc ? metalc5 E NA NA . A NA 104 1_555 F O HOH . A HOH 214 2_748 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 221 n n C1 C2 GOL sing 222 n n C1 H11 GOL sing 223 n n C1 H12 GOL sing 224 n n O1 HO1 GOL sing 225 n n C2 O2 GOL sing 226 n n C2 C3 GOL sing 227 n n C2 H2 GOL sing 228 n n O2 HO2 GOL sing 229 n n C3 O3 GOL sing 230 n n C3 H31 GOL sing 231 n n C3 H32 GOL sing 232 n n O3 HO3 GOL sing 233 n n # _atom_sites.entry_id 6HAH _atom_sites.fract_transf_matrix[1][1] 0.040422 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.016405 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025913 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.036922 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FWQ A 1 101 1 FWQ SC6 . C 3 FWN A 1 102 1 FWN P6 . D 4 GOL A 1 103 1 GOL GOL . E 5 NA A 1 104 1 NA NA . F 6 HOH A 1 201 18 HOH HOH . F 6 HOH A 2 202 7 HOH HOH . F 6 HOH A 3 203 28 HOH HOH . F 6 HOH A 4 204 20 HOH HOH . F 6 HOH A 5 205 1 HOH HOH . F 6 HOH A 6 206 5 HOH HOH . F 6 HOH A 7 207 3 HOH HOH . F 6 HOH A 8 208 33 HOH HOH . F 6 HOH A 9 209 23 HOH HOH . F 6 HOH A 10 210 1 HOH HOH . F 6 HOH A 11 211 59 HOH HOH . F 6 HOH A 12 212 36 HOH HOH . F 6 HOH A 13 213 52 HOH HOH . F 6 HOH A 14 214 9 HOH HOH . F 6 HOH A 15 215 46 HOH HOH . F 6 HOH A 16 216 55 HOH HOH . F 6 HOH A 17 217 58 HOH HOH . F 6 HOH A 18 218 27 HOH HOH . F 6 HOH A 19 219 13 HOH HOH . F 6 HOH A 20 220 16 HOH HOH . F 6 HOH A 21 221 17 HOH HOH . F 6 HOH A 22 222 8 HOH HOH . F 6 HOH A 23 223 4 HOH HOH . F 6 HOH A 24 224 38 HOH HOH . F 6 HOH A 25 225 5 HOH HOH . F 6 HOH A 26 226 30 HOH HOH . F 6 HOH A 27 227 37 HOH HOH . F 6 HOH A 28 228 49 HOH HOH . F 6 HOH A 29 229 41 HOH HOH . F 6 HOH A 30 230 24 HOH HOH . F 6 HOH A 31 231 26 HOH HOH . F 6 HOH A 32 232 48 HOH HOH . F 6 HOH A 33 233 3 HOH HOH . F 6 HOH A 34 234 21 HOH HOH . F 6 HOH A 35 235 2 HOH HOH . F 6 HOH A 36 236 31 HOH HOH . F 6 HOH A 37 237 6 HOH HOH . F 6 HOH A 38 238 10 HOH HOH . F 6 HOH A 39 239 25 HOH HOH . F 6 HOH A 40 240 11 HOH HOH . F 6 HOH A 41 241 6 HOH HOH . F 6 HOH A 42 242 14 HOH HOH . F 6 HOH A 43 243 29 HOH HOH . F 6 HOH A 44 244 32 HOH HOH . F 6 HOH A 45 245 42 HOH HOH . F 6 HOH A 46 246 43 HOH HOH . F 6 HOH A 47 247 50 HOH HOH . F 6 HOH A 48 248 34 HOH HOH . F 6 HOH A 49 249 35 HOH HOH . F 6 HOH A 50 250 45 HOH HOH . F 6 HOH A 51 251 40 HOH HOH . F 6 HOH A 52 252 2 HOH HOH . F 6 HOH A 53 253 53 HOH HOH . F 6 HOH A 54 254 4 HOH HOH . F 6 HOH A 55 255 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 7.802 14.123 45.9 1 36.63 ? C1 GOL 103 A 1 HETATM 2 O O1 GOL . . . D 4 8.338 15.194 46.663 1 40.69 ? O1 GOL 103 A 1 HETATM 3 C C2 GOL . . . D 4 8.865 13.077 45.668 1 33.03 ? C2 GOL 103 A 1 HETATM 4 O O2 GOL . . . D 4 10.067 13.709 45.219 1 35.49 ? O2 GOL 103 A 1 HETATM 5 C C3 GOL . . . D 4 8.427 12.025 44.674 1 24.66 ? C3 GOL 103 A 1 HETATM 6 O O3 GOL . . . D 4 7.912 12.614 43.484 1 25.13 ? O3 GOL 103 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #