data_6HAL # _model_server_result.job_id 2pbRtBsCxgpA5d2ZKXJFtA _model_server_result.datetime_utc '2024-11-04 22:40:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hal # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":201}' # _entry.id 6HAL # _exptl.entry_id 6HAL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6HAL _cell.length_a 55.8 _cell.length_b 157.4 _cell.length_c 64.2 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HAL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N ? 3 I N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 86 A HIS 87 1_555 E FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc2 B NE2 HIS 91 B HIS 92 1_555 G FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc3 C NE2 HIS 86 C HIS 87 1_555 I FE HEM . C HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc4 D NE2 HIS 91 D HIS 92 1_555 K FE HEM . D HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 130 n n CHA C4D HEM doub 131 n n CHA HHA HEM sing 132 n n CHB C4A HEM sing 133 n n CHB C1B HEM doub 134 n n CHB HHB HEM sing 135 n n CHC C4B HEM sing 136 n n CHC C1C HEM doub 137 n n CHC HHC HEM sing 138 n n CHD C4C HEM doub 139 n n CHD C1D HEM sing 140 n n CHD HHD HEM sing 141 n n C1A C2A HEM doub 142 n y C1A NA HEM sing 143 n y C2A C3A HEM sing 144 n y C2A CAA HEM sing 145 n n C3A C4A HEM doub 146 n y C3A CMA HEM sing 147 n n C4A NA HEM sing 148 n y CMA HMA HEM sing 149 n n CMA HMAA HEM sing 150 n n CMA HMAB HEM sing 151 n n CAA CBA HEM sing 152 n n CAA HAA HEM sing 153 n n CAA HAAA HEM sing 154 n n CBA CGA HEM sing 155 n n CBA HBA HEM sing 156 n n CBA HBAA HEM sing 157 n n CGA O1A HEM doub 158 n n CGA O2A HEM sing 159 n n C1B C2B HEM sing 160 n n C1B NB HEM sing 161 n n C2B C3B HEM doub 162 n n C2B CMB HEM sing 163 n n C3B C4B HEM sing 164 n n C3B CAB HEM sing 165 n n C4B NB HEM doub 166 n n CMB HMB HEM sing 167 n n CMB HMBA HEM sing 168 n n CMB HMBB HEM sing 169 n n CAB CBB HEM doub 170 n n CAB HAB HEM sing 171 n n CBB HBB HEM sing 172 n n CBB HBBA HEM sing 173 n n C1C C2C HEM sing 174 n y C1C NC HEM sing 175 n y C2C C3C HEM doub 176 n y C2C CMC HEM sing 177 n n C3C C4C HEM sing 178 n y C3C CAC HEM sing 179 n n C4C NC HEM sing 180 n y CMC HMC HEM sing 181 n n CMC HMCA HEM sing 182 n n CMC HMCB HEM sing 183 n n CAC CBC HEM doub 184 n n CAC HAC HEM sing 185 n n CBC HBC HEM sing 186 n n CBC HBCA HEM sing 187 n n C1D C2D HEM sing 188 n n C1D ND HEM doub 189 n n C2D C3D HEM doub 190 n n C2D CMD HEM sing 191 n n C3D C4D HEM sing 192 n n C3D CAD HEM sing 193 n n C4D ND HEM sing 194 n n CMD HMD HEM sing 195 n n CMD HMDA HEM sing 196 n n CMD HMDB HEM sing 197 n n CAD CBD HEM sing 198 n n CAD HAD HEM sing 199 n n CAD HADA HEM sing 200 n n CBD CGD HEM sing 201 n n CBD HBD HEM sing 202 n n CBD HBDA HEM sing 203 n n CGD O1D HEM doub 204 n n CGD O2D HEM sing 205 n n O2A H2A HEM sing 206 n n O2D H2D HEM sing 207 n n FE NA HEM sing 208 n n FE NB HEM sing 209 n n FE NC HEM sing 210 n n FE ND HEM sing 211 n n # _atom_sites.entry_id 6HAL _atom_sites.fract_transf_matrix[1][1] 0.017921 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006353 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015576 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HEM A 1 201 150 HEM HEM . F 4 CMO A 1 202 151 CMO CMO . G 3 HEM B 1 201 150 HEM HEM . H 4 CMO B 1 202 151 CMO CMO . I 3 HEM C 1 201 150 HEM HEM . J 4 CMO C 1 202 151 CMO CMO . K 3 HEM D 1 201 150 HEM HEM . L 4 CMO D 1 202 151 CMO CMO . M 5 HOH A 1 301 18 HOH HOH . M 5 HOH A 2 302 12 HOH HOH . M 5 HOH A 3 303 3 HOH HOH . M 5 HOH A 4 304 4 HOH HOH . M 5 HOH A 5 305 2 HOH HOH . M 5 HOH A 6 306 1 HOH HOH . M 5 HOH A 7 307 17 HOH HOH . M 5 HOH A 8 308 16 HOH HOH . N 5 HOH B 1 301 11 HOH HOH . N 5 HOH B 2 302 14 HOH HOH . N 5 HOH B 3 303 5 HOH HOH . O 5 HOH C 1 301 7 HOH HOH . O 5 HOH C 2 302 13 HOH HOH . O 5 HOH C 3 303 6 HOH HOH . O 5 HOH C 4 304 8 HOH HOH . O 5 HOH C 5 305 20 HOH HOH . O 5 HOH C 6 306 9 HOH HOH . P 5 HOH D 1 301 15 HOH HOH . P 5 HOH D 2 302 19 HOH HOH . P 5 HOH D 3 303 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . G 3 17.813 -11.664 26.095 1 36.91 ? CHA HEM 201 B 1 HETATM 2 C CHB HEM . . . G 3 13.411 -10.366 27.452 1 35.51 ? CHB HEM 201 B 1 HETATM 3 C CHC HEM . . . G 3 11.569 -13.801 24.657 1 33.44 ? CHC HEM 201 B 1 HETATM 4 C CHD HEM . . . G 3 15.975 -15.185 23.387 1 35.15 ? CHD HEM 201 B 1 HETATM 5 C C1A HEM . . . G 3 16.761 -11.05 26.744 1 36.27 ? C1A HEM 201 B 1 HETATM 6 C C2A HEM . . . G 3 16.878 -9.979 27.678 1 37.41 ? C2A HEM 201 B 1 HETATM 7 C C3A HEM . . . G 3 15.65 -9.649 28.076 1 37.01 ? C3A HEM 201 B 1 HETATM 8 C C4A HEM . . . G 3 14.765 -10.473 27.357 1 35.55 ? C4A HEM 201 B 1 HETATM 9 C CMA HEM . . . G 3 15.305 -8.56 29.079 1 39.06 ? CMA HEM 201 B 1 HETATM 10 C CAA HEM . . . G 3 18.147 -9.346 28.233 1 40.03 ? CAA HEM 201 B 1 HETATM 11 C CBA HEM . . . G 3 18.822 -8.404 27.247 1 42.36 ? CBA HEM 201 B 1 HETATM 12 C CGA HEM . . . G 3 20.052 -7.729 27.866 1 46.16 ? CGA HEM 201 B 1 HETATM 13 O O1A HEM . . . G 3 20.479 -8.011 28.993 1 48.39 ? O1A HEM 201 B 1 HETATM 14 O O2A HEM . . . G 3 20.687 -6.792 27.143 1 47.99 ? O2A HEM 201 B 1 HETATM 15 C C1B HEM . . . G 3 12.53 -11.179 26.748 1 34.34 ? C1B HEM 201 B 1 HETATM 16 C C2B HEM . . . G 3 11.113 -11.068 26.943 1 34.23 ? C2B HEM 201 B 1 HETATM 17 C C3B HEM . . . G 3 10.553 -12.047 26.213 1 33.83 ? C3B HEM 201 B 1 HETATM 18 C C4B HEM . . . G 3 11.712 -12.739 25.536 1 33.31 ? C4B HEM 201 B 1 HETATM 19 C CMB HEM . . . G 3 10.381 -10.062 27.834 1 36.44 ? CMB HEM 201 B 1 HETATM 20 C CAB HEM . . . G 3 9.091 -12.314 26.172 1 34.61 ? CAB HEM 201 B 1 HETATM 21 C CBB HEM . . . G 3 8.473 -12.813 25.116 1 42.16 ? CBB HEM 201 B 1 HETATM 22 C C1C HEM . . . G 3 12.597 -14.478 24.041 1 32.88 ? C1C HEM 201 B 1 HETATM 23 C C2C HEM . . . G 3 12.433 -15.653 23.258 1 33.27 ? C2C HEM 201 B 1 HETATM 24 C C3C HEM . . . G 3 13.704 -16.037 22.866 1 33.76 ? C3C HEM 201 B 1 HETATM 25 C C4C HEM . . . G 3 14.607 -15.105 23.48 1 33.82 ? C4C HEM 201 B 1 HETATM 26 C CMC HEM . . . G 3 11.09 -16.3 22.911 1 34.27 ? CMC HEM 201 B 1 HETATM 27 C CAC HEM . . . G 3 14.14 -17.185 22.032 1 34.73 ? CAC HEM 201 B 1 HETATM 28 C CBC HEM . . . G 3 13.49 -18.327 22.011 1 36.47 ? CBC HEM 201 B 1 HETATM 29 C C1D HEM . . . G 3 16.837 -14.296 24.018 1 35.27 ? C1D HEM 201 B 1 HETATM 30 C C2D HEM . . . G 3 18.3 -14.445 23.888 1 36.44 ? C2D HEM 201 B 1 HETATM 31 C C3D HEM . . . G 3 18.811 -13.429 24.581 1 37.01 ? C3D HEM 201 B 1 HETATM 32 C C4D HEM . . . G 3 17.667 -12.698 25.171 1 36.06 ? C4D HEM 201 B 1 HETATM 33 C CMD HEM . . . G 3 19.034 -15.516 23.091 1 38.38 ? CMD HEM 201 B 1 HETATM 34 C CAD HEM . . . G 3 20.282 -13.108 24.788 1 39.08 ? CAD HEM 201 B 1 HETATM 35 C CBD HEM . . . G 3 20.873 -13.985 25.896 1 40.65 ? CBD HEM 201 B 1 HETATM 36 C CGD HEM . . . G 3 22.385 -13.804 25.946 1 43.79 ? CGD HEM 201 B 1 HETATM 37 O O1D HEM . . . G 3 23.113 -14.766 26.116 1 44.89 ? O1D HEM 201 B 1 HETATM 38 O O2D HEM . . . G 3 22.954 -12.591 25.804 1 45.58 ? O2D HEM 201 B 1 HETATM 39 N NA HEM . . . G 3 15.435 -11.372 26.522 1 35.34 ? NA HEM 201 B 1 HETATM 40 N NB HEM . . . G 3 12.877 -12.168 25.893 1 33.57 ? NB HEM 201 B 1 HETATM 41 N NC HEM . . . G 3 13.922 -14.172 24.203 1 33.49 ? NC HEM 201 B 1 HETATM 42 N ND HEM . . . G 3 16.503 -13.254 24.8 1 34.98 ? ND HEM 201 B 1 HETATM 43 FE FE HEM . . . G 3 14.684 -12.739 25.275 1 34.24 ? FE HEM 201 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 43 #