data_6HAS # _model_server_result.job_id '_KXD0mEVTs7C7l1d1nv-WA' _model_server_result.datetime_utc '2024-11-22 14:46:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6has # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 6HAS # _exptl.entry_id 6HAS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6HAS _cell.length_a 59.732 _cell.length_b 59.732 _cell.length_c 83.305 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HAS _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 38 A CYS 362 1_555 A SG CYS 56 A CYS 380 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.058 ? disulf ? disulf2 A SG CYS 38 A CYS 362 1_555 A SG CYS 56 A CYS 380 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 B SG CYS 38 B CYS 362 1_555 B SG CYS 56 B CYS 380 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.132 ? disulf ? disulf4 B SG CYS 38 B CYS 362 1_555 B SG CYS 56 B CYS 380 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.144 ? metalc ? metalc1 A N HIS 1 A HIS 325 1_555 C NI NI . A NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc2 A ND1 HIS 1 A HIS 325 1_555 C NI NI . A NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc3 C NI NI . A NI 501 1_555 D O HOH . A HOH 623 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc4 C NI NI . A NI 501 1_555 D O HOH . A HOH 674 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc5 C NI NI . A NI 501 6_445 B N HIS 1 B HIS 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc6 C NI NI . A NI 501 6_445 B ND1 HIS 1 B HIS 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6HAS _atom_sites.fract_transf_matrix[1][1] 0.016741 _atom_sites.fract_transf_matrix[1][2] 0.009666 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019331 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012004 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NI A 1 501 1 NI Ni . D 3 HOH A 1 601 106 HOH HOH . D 3 HOH A 2 602 174 HOH HOH . D 3 HOH A 3 603 122 HOH HOH . D 3 HOH A 4 604 118 HOH HOH . D 3 HOH A 5 605 93 HOH HOH . D 3 HOH A 6 606 158 HOH HOH . D 3 HOH A 7 607 159 HOH HOH . D 3 HOH A 8 608 185 HOH HOH . D 3 HOH A 9 609 143 HOH HOH . D 3 HOH A 10 610 100 HOH HOH . D 3 HOH A 11 611 65 HOH HOH . D 3 HOH A 12 612 111 HOH HOH . D 3 HOH A 13 613 130 HOH HOH . D 3 HOH A 14 614 170 HOH HOH . D 3 HOH A 15 615 40 HOH HOH . D 3 HOH A 16 616 39 HOH HOH . D 3 HOH A 17 617 192 HOH HOH . D 3 HOH A 18 618 69 HOH HOH . D 3 HOH A 19 619 105 HOH HOH . D 3 HOH A 20 620 71 HOH HOH . D 3 HOH A 21 621 80 HOH HOH . D 3 HOH A 22 622 121 HOH HOH . D 3 HOH A 23 623 2 HOH HOH . D 3 HOH A 24 624 1 HOH HOH . D 3 HOH A 25 625 103 HOH HOH . D 3 HOH A 26 626 37 HOH HOH . D 3 HOH A 27 627 10 HOH HOH . D 3 HOH A 28 628 175 HOH HOH . D 3 HOH A 29 629 11 HOH HOH . D 3 HOH A 30 630 87 HOH HOH . D 3 HOH A 31 631 50 HOH HOH . D 3 HOH A 32 632 81 HOH HOH . D 3 HOH A 33 633 89 HOH HOH . D 3 HOH A 34 634 99 HOH HOH . D 3 HOH A 35 635 72 HOH HOH . D 3 HOH A 36 636 119 HOH HOH . D 3 HOH A 37 637 206 HOH HOH . D 3 HOH A 38 638 114 HOH HOH . D 3 HOH A 39 639 64 HOH HOH . D 3 HOH A 40 640 18 HOH HOH . D 3 HOH A 41 641 134 HOH HOH . D 3 HOH A 42 642 30 HOH HOH . D 3 HOH A 43 643 161 HOH HOH . D 3 HOH A 44 644 15 HOH HOH . D 3 HOH A 45 645 136 HOH HOH . D 3 HOH A 46 646 117 HOH HOH . D 3 HOH A 47 647 90 HOH HOH . D 3 HOH A 48 648 77 HOH HOH . D 3 HOH A 49 649 139 HOH HOH . D 3 HOH A 50 650 45 HOH HOH . D 3 HOH A 51 651 48 HOH HOH . D 3 HOH A 52 652 148 HOH HOH . D 3 HOH A 53 653 27 HOH HOH . D 3 HOH A 54 654 180 HOH HOH . D 3 HOH A 55 655 153 HOH HOH . D 3 HOH A 56 656 198 HOH HOH . D 3 HOH A 57 657 24 HOH HOH . D 3 HOH A 58 658 12 HOH HOH . D 3 HOH A 59 659 135 HOH HOH . D 3 HOH A 60 660 202 HOH HOH . D 3 HOH A 61 661 29 HOH HOH . D 3 HOH A 62 662 56 HOH HOH . D 3 HOH A 63 663 166 HOH HOH . D 3 HOH A 64 664 57 HOH HOH . D 3 HOH A 65 665 151 HOH HOH . D 3 HOH A 66 666 123 HOH HOH . D 3 HOH A 67 667 36 HOH HOH . D 3 HOH A 68 668 210 HOH HOH . D 3 HOH A 69 669 9 HOH HOH . D 3 HOH A 70 670 211 HOH HOH . D 3 HOH A 71 671 132 HOH HOH . D 3 HOH A 72 672 127 HOH HOH . D 3 HOH A 73 673 138 HOH HOH . D 3 HOH A 74 674 3 HOH HOH . D 3 HOH A 75 675 91 HOH HOH . D 3 HOH A 76 676 194 HOH HOH . D 3 HOH A 77 677 107 HOH HOH . D 3 HOH A 78 678 142 HOH HOH . D 3 HOH A 79 679 112 HOH HOH . D 3 HOH A 80 680 183 HOH HOH . D 3 HOH A 81 681 144 HOH HOH . D 3 HOH A 82 682 61 HOH HOH . D 3 HOH A 83 683 173 HOH HOH . D 3 HOH A 84 684 152 HOH HOH . D 3 HOH A 85 685 52 HOH HOH . D 3 HOH A 86 686 83 HOH HOH . D 3 HOH A 87 687 203 HOH HOH . D 3 HOH A 88 688 184 HOH HOH . D 3 HOH A 89 689 187 HOH HOH . D 3 HOH A 90 690 201 HOH HOH . D 3 HOH A 91 691 209 HOH HOH . D 3 HOH A 92 692 188 HOH HOH . D 3 HOH A 93 693 182 HOH HOH . D 3 HOH A 94 694 102 HOH HOH . D 3 HOH A 95 695 110 HOH HOH . D 3 HOH A 96 696 189 HOH HOH . D 3 HOH A 97 697 213 HOH HOH . D 3 HOH A 98 698 191 HOH HOH . D 3 HOH A 99 699 164 HOH HOH . D 3 HOH A 100 700 150 HOH HOH . D 3 HOH A 101 701 204 HOH HOH . D 3 HOH A 102 702 85 HOH HOH . D 3 HOH A 103 703 190 HOH HOH . E 3 HOH B 1 501 197 HOH HOH . E 3 HOH B 2 502 162 HOH HOH . E 3 HOH B 3 503 172 HOH HOH . E 3 HOH B 4 504 171 HOH HOH . E 3 HOH B 5 505 58 HOH HOH . E 3 HOH B 6 506 176 HOH HOH . E 3 HOH B 7 507 109 HOH HOH . E 3 HOH B 8 508 124 HOH HOH . E 3 HOH B 9 509 53 HOH HOH . E 3 HOH B 10 510 186 HOH HOH . E 3 HOH B 11 511 25 HOH HOH . E 3 HOH B 12 512 169 HOH HOH . E 3 HOH B 13 513 120 HOH HOH . E 3 HOH B 14 514 42 HOH HOH . E 3 HOH B 15 515 96 HOH HOH . E 3 HOH B 16 516 76 HOH HOH . E 3 HOH B 17 517 7 HOH HOH . E 3 HOH B 18 518 21 HOH HOH . E 3 HOH B 19 519 34 HOH HOH . E 3 HOH B 20 520 60 HOH HOH . E 3 HOH B 21 521 4 HOH HOH . E 3 HOH B 22 522 193 HOH HOH . E 3 HOH B 23 523 55 HOH HOH . E 3 HOH B 24 524 113 HOH HOH . E 3 HOH B 25 525 44 HOH HOH . E 3 HOH B 26 526 68 HOH HOH . E 3 HOH B 27 527 38 HOH HOH . E 3 HOH B 28 528 179 HOH HOH . E 3 HOH B 29 529 14 HOH HOH . E 3 HOH B 30 530 116 HOH HOH . E 3 HOH B 31 531 157 HOH HOH . E 3 HOH B 32 532 47 HOH HOH . E 3 HOH B 33 533 22 HOH HOH . E 3 HOH B 34 534 128 HOH HOH . E 3 HOH B 35 535 95 HOH HOH . E 3 HOH B 36 536 13 HOH HOH . E 3 HOH B 37 537 165 HOH HOH . E 3 HOH B 38 538 108 HOH HOH . E 3 HOH B 39 539 88 HOH HOH . E 3 HOH B 40 540 178 HOH HOH . E 3 HOH B 41 541 149 HOH HOH . E 3 HOH B 42 542 86 HOH HOH . E 3 HOH B 43 543 208 HOH HOH . E 3 HOH B 44 544 125 HOH HOH . E 3 HOH B 45 545 8 HOH HOH . E 3 HOH B 46 546 205 HOH HOH . E 3 HOH B 47 547 46 HOH HOH . E 3 HOH B 48 548 49 HOH HOH . E 3 HOH B 49 549 79 HOH HOH . E 3 HOH B 50 550 129 HOH HOH . E 3 HOH B 51 551 181 HOH HOH . E 3 HOH B 52 552 177 HOH HOH . E 3 HOH B 53 553 35 HOH HOH . E 3 HOH B 54 554 20 HOH HOH . E 3 HOH B 55 555 23 HOH HOH . E 3 HOH B 56 556 74 HOH HOH . E 3 HOH B 57 557 141 HOH HOH . E 3 HOH B 58 558 146 HOH HOH . E 3 HOH B 59 559 70 HOH HOH . E 3 HOH B 60 560 104 HOH HOH . E 3 HOH B 61 561 94 HOH HOH . E 3 HOH B 62 562 6 HOH HOH . E 3 HOH B 63 563 101 HOH HOH . E 3 HOH B 64 564 51 HOH HOH . E 3 HOH B 65 565 133 HOH HOH . E 3 HOH B 66 566 73 HOH HOH . E 3 HOH B 67 567 16 HOH HOH . E 3 HOH B 68 568 5 HOH HOH . E 3 HOH B 69 569 115 HOH HOH . E 3 HOH B 70 570 31 HOH HOH . E 3 HOH B 71 571 199 HOH HOH . E 3 HOH B 72 572 140 HOH HOH . E 3 HOH B 73 573 97 HOH HOH . E 3 HOH B 74 574 66 HOH HOH . E 3 HOH B 75 575 75 HOH HOH . E 3 HOH B 76 576 167 HOH HOH . E 3 HOH B 77 577 28 HOH HOH . E 3 HOH B 78 578 145 HOH HOH . E 3 HOH B 79 579 19 HOH HOH . E 3 HOH B 80 580 26 HOH HOH . E 3 HOH B 81 581 147 HOH HOH . E 3 HOH B 82 582 155 HOH HOH . E 3 HOH B 83 583 212 HOH HOH . E 3 HOH B 84 584 67 HOH HOH . E 3 HOH B 85 585 32 HOH HOH . E 3 HOH B 86 586 163 HOH HOH . E 3 HOH B 87 587 154 HOH HOH . E 3 HOH B 88 588 137 HOH HOH . E 3 HOH B 89 589 131 HOH HOH . E 3 HOH B 90 590 92 HOH HOH . E 3 HOH B 91 591 195 HOH HOH . E 3 HOH B 92 592 59 HOH HOH . E 3 HOH B 93 593 41 HOH HOH . E 3 HOH B 94 594 168 HOH HOH . E 3 HOH B 95 595 200 HOH HOH . E 3 HOH B 96 596 98 HOH HOH . E 3 HOH B 97 597 196 HOH HOH . E 3 HOH B 98 598 84 HOH HOH . E 3 HOH B 99 599 78 HOH HOH . E 3 HOH B 100 600 207 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 30.858 _atom_site.Cartn_y -15.692 _atom_site.Cartn_z -5.695 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 16.23 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #