data_6HAW # _model_server_result.job_id flDbvtXuaHIrNXlgxaZU5w _model_server_result.datetime_utc '2024-11-05 08:32:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6haw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"HA","auth_seq_id":202}' # _entry.id 6HAW # _exptl.entry_id 6HAW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 678.94 _entity.id 23 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6HAW _cell.length_a 212.69 _cell.length_b 212.69 _cell.length_c 347.066 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HAW _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 23 _struct_asym.id HA _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 H SG CYS 11 H CYS 24 1_555 H SG CYS 55 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf3 H SG CYS 27 H CYS 40 1_555 H SG CYS 41 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc1 C NE2 HIS 82 C HIS 83 1_555 T FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc2 C NE2 HIS 96 C HIS 97 1_555 U FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc3 C NE2 HIS 181 C HIS 182 1_555 T FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc4 C NE2 HIS 195 C HIS 196 1_555 U FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc5 D NE2 HIS 40 D HIS 41 1_555 DA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc6 D SD MET 159 D MET 160 1_555 DA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? # _chem_comp.formula 'C36 H73 N O8 P 1' _chem_comp.formula_weight 678.94 _chem_comp.id PX4 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 P1 PX4 sing 1080 n n O1 H1P PX4 sing 1081 n n O2 P1 PX4 doub 1082 n n P1 O3 PX4 sing 1083 n n P1 O4 PX4 sing 1084 n n O3 C1 PX4 sing 1085 n n C1 C2 PX4 sing 1086 n n C1 H1 PX4 sing 1087 n n C1 H2 PX4 sing 1088 n n C2 N1 PX4 sing 1089 n n C2 H3 PX4 sing 1090 n n C2 H4 PX4 sing 1091 n n N1 C3 PX4 sing 1092 n n N1 C4 PX4 sing 1093 n n N1 C5 PX4 sing 1094 n n C3 H5 PX4 sing 1095 n n C3 H6 PX4 sing 1096 n n C3 H7 PX4 sing 1097 n n C4 H8 PX4 sing 1098 n n C4 H9 PX4 sing 1099 n n C4 H10 PX4 sing 1100 n n C5 H11 PX4 sing 1101 n n C5 H12 PX4 sing 1102 n n C5 H13 PX4 sing 1103 n n O4 C6 PX4 sing 1104 n n C6 C7 PX4 sing 1105 n n C6 H14 PX4 sing 1106 n n C6 H15 PX4 sing 1107 n n C7 C8 PX4 sing 1108 n n C7 O7 PX4 sing 1109 n n C7 H16 PX4 sing 1110 n n C8 O5 PX4 sing 1111 n n C8 H17 PX4 sing 1112 n n C8 H18 PX4 sing 1113 n n O5 C9 PX4 sing 1114 n n C9 O6 PX4 doub 1115 n n C9 C10 PX4 sing 1116 n n C10 C11 PX4 sing 1117 n n C10 H19 PX4 sing 1118 n n C10 H20 PX4 sing 1119 n n C11 C12 PX4 sing 1120 n n C11 H21 PX4 sing 1121 n n C11 H22 PX4 sing 1122 n n C12 C13 PX4 sing 1123 n n C12 H23 PX4 sing 1124 n n C12 H24 PX4 sing 1125 n n C13 C14 PX4 sing 1126 n n C13 H25 PX4 sing 1127 n n C13 H26 PX4 sing 1128 n n C14 C15 PX4 sing 1129 n n C14 H27 PX4 sing 1130 n n C14 H28 PX4 sing 1131 n n C15 C16 PX4 sing 1132 n n C15 H29 PX4 sing 1133 n n C15 H30 PX4 sing 1134 n n C16 C17 PX4 sing 1135 n n C16 H31 PX4 sing 1136 n n C16 H32 PX4 sing 1137 n n C17 C18 PX4 sing 1138 n n C17 H33 PX4 sing 1139 n n C17 H34 PX4 sing 1140 n n C18 C19 PX4 sing 1141 n n C18 H35 PX4 sing 1142 n n C18 H36 PX4 sing 1143 n n C19 C20 PX4 sing 1144 n n C19 H37 PX4 sing 1145 n n C19 H38 PX4 sing 1146 n n C20 C21 PX4 sing 1147 n n C20 H39 PX4 sing 1148 n n C20 H40 PX4 sing 1149 n n C21 C22 PX4 sing 1150 n n C21 H41 PX4 sing 1151 n n C21 H42 PX4 sing 1152 n n C22 H43 PX4 sing 1153 n n C22 H44 PX4 sing 1154 n n C22 H45 PX4 sing 1155 n n O7 C23 PX4 sing 1156 n n C23 O8 PX4 doub 1157 n n C23 C24 PX4 sing 1158 n n C24 C25 PX4 sing 1159 n n C24 H46 PX4 sing 1160 n n C24 H47 PX4 sing 1161 n n C25 C26 PX4 sing 1162 n n C25 H48 PX4 sing 1163 n n C25 H49 PX4 sing 1164 n n C26 C27 PX4 sing 1165 n n C26 H50 PX4 sing 1166 n n C26 H51 PX4 sing 1167 n n C27 C28 PX4 sing 1168 n n C27 H52 PX4 sing 1169 n n C27 H53 PX4 sing 1170 n n C28 C29 PX4 sing 1171 n n C28 H54 PX4 sing 1172 n n C28 H55 PX4 sing 1173 n n C29 C30 PX4 sing 1174 n n C29 H56 PX4 sing 1175 n n C29 H57 PX4 sing 1176 n n C30 C31 PX4 sing 1177 n n C30 H58 PX4 sing 1178 n n C30 H59 PX4 sing 1179 n n C31 C32 PX4 sing 1180 n n C31 H60 PX4 sing 1181 n n C31 H61 PX4 sing 1182 n n C32 C33 PX4 sing 1183 n n C32 H62 PX4 sing 1184 n n C32 H63 PX4 sing 1185 n n C33 C34 PX4 sing 1186 n n C33 H64 PX4 sing 1187 n n C33 H65 PX4 sing 1188 n n C34 C35 PX4 sing 1189 n n C34 H66 PX4 sing 1190 n n C34 H67 PX4 sing 1191 n n C35 C36 PX4 sing 1192 n n C35 H68 PX4 sing 1193 n n C35 H69 PX4 sing 1194 n n C36 H70 PX4 sing 1195 n n C36 H71 PX4 sing 1196 n n C36 H72 PX4 sing 1197 n n # _atom_sites.entry_id 6HAW _atom_sites.fract_transf_matrix[1][1] 0.004702 _atom_sites.fract_transf_matrix[1][2] 0.002715 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005429 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002881 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 11 6PE A 1 501 502 6PE 6PE . L 12 PGE A 1 502 501 PGE PGE . M 13 PO4 A 1 503 503 PO4 PO4 . N 13 PO4 A 1 504 504 PO4 PO4 . O 13 PO4 A 1 505 505 PO4 PO4 . P 14 CDL A 1 506 401 CDL CDL . Q 13 PO4 B 1 501 503 PO4 PO4 . R 15 PG4 B 1 502 501 PG4 PG4 . S 16 PX6 B 1 503 502 PX6 PX6 . T 17 HEM C 1 401 402 HEM HEM . U 17 HEM C 1 402 403 HEM HEM . V 18 LMT C 1 403 405 LMT LMT . W 14 CDL C 1 404 408 CDL CDL . X 19 PEE C 1 405 409 PEE PEE . Y 20 FX2 C 1 406 1001 FX2 2G7 . Z 12 PGE C 1 407 410 PGE PGE . AA 12 PGE C 1 408 411 PGE PGE . BA 12 PGE C 1 409 412 PGE PGE . CA 16 PX6 C 1 410 404 PX6 PX6 . DA 21 HEC D 1 501 501 HEC HEC . EA 13 PO4 D 1 502 502 PO4 PO4 . FA 14 CDL D 1 503 503 CDL CDL . GA 22 FES E 1 201 201 FES FES . HA 23 PX4 E 1 202 202 PX4 PX4 . IA 13 PO4 E 1 203 203 PO4 PO4 . JA 19 PEE E 1 204 204 PEE PEE . KA 14 CDL E 1 205 205 CDL CDL . LA 13 PO4 F 1 501 501 PO4 PO4 . MA 13 PO4 F 1 502 502 PO4 PO4 . NA 13 PO4 G 1 101 101 PO4 PO4 . OA 13 PO4 G 1 102 102 PO4 PO4 . PA 13 PO4 G 1 103 103 PO4 PO4 . QA 24 HOH A 1 601 1003 HOH HOH . QA 24 HOH A 2 602 1007 HOH HOH . QA 24 HOH A 3 603 1001 HOH HOH . QA 24 HOH A 4 604 1003 HOH HOH . QA 24 HOH A 5 605 1005 HOH HOH . QA 24 HOH A 6 606 1007 HOH HOH . QA 24 HOH A 7 607 1006 HOH HOH . QA 24 HOH A 8 608 1004 HOH HOH . QA 24 HOH A 9 609 1002 HOH HOH . QA 24 HOH A 10 610 1008 HOH HOH . RA 24 HOH B 1 601 1005 HOH HOH . RA 24 HOH B 2 602 1002 HOH HOH . RA 24 HOH B 3 603 1004 HOH HOH . RA 24 HOH B 4 604 1001 HOH HOH . SA 24 HOH C 1 501 1003 HOH HOH . SA 24 HOH C 2 502 1009 HOH HOH . SA 24 HOH C 3 503 1002 HOH HOH . SA 24 HOH C 4 504 1005 HOH HOH . SA 24 HOH C 5 505 1006 HOH HOH . SA 24 HOH C 6 506 1004 HOH HOH . SA 24 HOH C 7 507 1008 HOH HOH . SA 24 HOH C 8 508 1001 HOH HOH . TA 24 HOH D 1 1001 1001 HOH HOH . TA 24 HOH D 2 1002 1004 HOH HOH . TA 24 HOH D 3 1003 1003 HOH HOH . TA 24 HOH D 4 1004 1002 HOH HOH . UA 24 HOH E 1 1001 1001 HOH HOH . UA 24 HOH E 2 1002 1002 HOH HOH . VA 24 HOH H 1 1001 1001 HOH HOH . WA 24 HOH J 1 1001 1001 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PX4 . . . HA 23 -67.953 -54.019 13.628 1 125.79 -1 O1 PX4 202 E 1 HETATM 2 O O2 PX4 . . . HA 23 -65.946 -52.675 12.752 1 121.27 ? O2 PX4 202 E 1 HETATM 3 P P1 PX4 . . . HA 23 -66.811 -53.908 12.649 1 124.5 ? P1 PX4 202 E 1 HETATM 4 O O3 PX4 . . . HA 23 -67.398 -54.074 11.148 1 122.7 ? O3 PX4 202 E 1 HETATM 5 C C1 PX4 . . . HA 23 -67.044 -53.253 10.032 1 118 ? C1 PX4 202 E 1 HETATM 6 C C2 PX4 . . . HA 23 -68.306 -52.999 9.187 1 115.89 ? C2 PX4 202 E 1 HETATM 7 N N1 PX4 . . . HA 23 -68.134 -52.455 7.82 1 113.95 ? N1 PX4 202 E 1 HETATM 8 C C3 PX4 . . . HA 23 -69.453 -52.251 7.206 1 114.04 ? C3 PX4 202 E 1 HETATM 9 C C4 PX4 . . . HA 23 -67.467 -51.147 7.838 1 113.23 ? C4 PX4 202 E 1 HETATM 10 C C5 PX4 . . . HA 23 -67.412 -53.401 6.958 1 114.75 ? C5 PX4 202 E 1 HETATM 11 O O4 PX4 . . . HA 23 -65.876 -55.237 12.787 1 129.16 ? O4 PX4 202 E 1 HETATM 12 C C6 PX4 . . . HA 23 -66.353 -56.567 13.076 1 129.51 ? C6 PX4 202 E 1 HETATM 13 C C7 PX4 . . . HA 23 -65.233 -57.599 13.322 1 131.14 ? C7 PX4 202 E 1 HETATM 14 C C8 PX4 . . . HA 23 -64.641 -58.127 12.017 1 132.6 ? C8 PX4 202 E 1 HETATM 15 O O5 PX4 . . . HA 23 -65.602 -58.754 11.174 1 134.09 ? O5 PX4 202 E 1 HETATM 16 C C9 PX4 . . . HA 23 -65.357 -58.793 9.737 1 133.24 ? C9 PX4 202 E 1 HETATM 17 O O6 PX4 . . . HA 23 -65.724 -57.84 9.058 1 135.38 ? O6 PX4 202 E 1 HETATM 18 C C10 PX4 . . . HA 23 -64.682 -59.999 9.099 1 127.76 ? C10 PX4 202 E 1 HETATM 19 C C11 PX4 . . . HA 23 -63.165 -59.848 9.005 1 121.29 ? C11 PX4 202 E 1 HETATM 20 C C12 PX4 . . . HA 23 -62.46 -61.196 9.157 1 116.98 ? C12 PX4 202 E 1 HETATM 21 C C13 PX4 . . . HA 23 -61.483 -61.487 8.02 1 113.13 ? C13 PX4 202 E 1 HETATM 22 O O7 PX4 . . . HA 23 -64.14 -57.021 14.053 1 132.76 ? O7 PX4 202 E 1 HETATM 23 C C23 PX4 . . . HA 23 -63.592 -57.814 15.157 1 128.85 ? C23 PX4 202 E 1 HETATM 24 O O8 PX4 . . . HA 23 -64.135 -57.69 16.245 1 132.1 ? O8 PX4 202 E 1 HETATM 25 C C24 PX4 . . . HA 23 -62.395 -58.745 14.98 1 122.03 ? C24 PX4 202 E 1 HETATM 26 C C25 PX4 . . . HA 23 -61.118 -58.224 15.649 1 114.19 ? C25 PX4 202 E 1 HETATM 27 C C26 PX4 . . . HA 23 -61.002 -58.626 17.118 1 109.85 ? C26 PX4 202 E 1 HETATM 28 C C27 PX4 . . . HA 23 -60.076 -59.819 17.314 1 107.53 ? C27 PX4 202 E 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 378 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #