data_6HAW
#
_model_server_result.job_id            Y41C2hlXNcgJAb57DcJiMw 
_model_server_result.datetime_utc      '2024-11-05 08:30:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6haw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":503}' 
#
_entry.id    6HAW 
#
_exptl.entry_id    6HAW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              647.883 
_entity.id                          16 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIPALMITOYL-SN-GLYCERO-3-PHOSPHATE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6HAW 
_cell.length_a            212.69 
_cell.length_b            212.69 
_cell.length_c            347.066 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6HAW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    decameric 
_pdbx_struct_assembly.oligomeric_count      10 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 16 S N N 
? 16 CA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 H SG CYS 11 H CYS 24 1_555 H SG CYS 55 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf3 H SG CYS 27 H CYS 40 1_555 H SG CYS 41 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
metalc ? metalc1 C NE2 HIS 82 C HIS 83 1_555 T FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? 
metalc ? metalc2 C NE2 HIS 96 C HIS 97 1_555 U FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
metalc ? metalc3 C NE2 HIS 181 C HIS 182 1_555 T FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? 
metalc ? metalc4 C NE2 HIS 195 C HIS 196 1_555 U FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
metalc ? metalc5 D NE2 HIS 40 D HIS 41 1_555 DA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
metalc ? metalc6 D SD MET 159 D MET 160 1_555 DA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? 
#
_chem_comp.formula           'C35 H68 O8 P -1' 
_chem_comp.formula_weight    647.883 
_chem_comp.id                PX6 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIPALMITOYL-SN-GLYCERO-3-PHOSPHATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 P1 PX6 sing 1198 n n 
O2 P1 PX6 doub 1199 n n 
P1 O3 PX6 sing 1200 n n 
P1 O4 PX6 sing 1201 n n 
O3 H1 PX6 sing 1202 n n 
O4 C1 PX6 sing 1203 n n 
C1 C2 PX6 sing 1204 n n 
C1 H2 PX6 sing 1205 n n 
C1 H3 PX6 sing 1206 n n 
C2 C3 PX6 sing 1207 n n 
C2 O7 PX6 sing 1208 n n 
C2 H4 PX6 sing 1209 n n 
C3 O5 PX6 sing 1210 n n 
C3 H5 PX6 sing 1211 n n 
C3 H6 PX6 sing 1212 n n 
O5 C4 PX6 sing 1213 n n 
C4 O6 PX6 doub 1214 n n 
C4 C5 PX6 sing 1215 n n 
C5 C6 PX6 sing 1216 n n 
C5 H7 PX6 sing 1217 n n 
C5 H8 PX6 sing 1218 n n 
C6 C7 PX6 sing 1219 n n 
C6 H9 PX6 sing 1220 n n 
C6 H10 PX6 sing 1221 n n 
C7 C8 PX6 sing 1222 n n 
C7 H11 PX6 sing 1223 n n 
C7 H12 PX6 sing 1224 n n 
C8 C9 PX6 sing 1225 n n 
C8 H13 PX6 sing 1226 n n 
C8 H14 PX6 sing 1227 n n 
C9 C10 PX6 sing 1228 n n 
C9 H15 PX6 sing 1229 n n 
C9 H16 PX6 sing 1230 n n 
C10 C11 PX6 sing 1231 n n 
C10 H17 PX6 sing 1232 n n 
C10 H18 PX6 sing 1233 n n 
C11 C12 PX6 sing 1234 n n 
C11 H19 PX6 sing 1235 n n 
C11 H20 PX6 sing 1236 n n 
C12 C13 PX6 sing 1237 n n 
C12 H21 PX6 sing 1238 n n 
C12 H22 PX6 sing 1239 n n 
C13 C14 PX6 sing 1240 n n 
C13 H23 PX6 sing 1241 n n 
C13 H24 PX6 sing 1242 n n 
C14 C15 PX6 sing 1243 n n 
C14 H25 PX6 sing 1244 n n 
C14 H26 PX6 sing 1245 n n 
C15 C16 PX6 sing 1246 n n 
C15 H27 PX6 sing 1247 n n 
C15 H28 PX6 sing 1248 n n 
C16 C17 PX6 sing 1249 n n 
C16 H29 PX6 sing 1250 n n 
C16 H30 PX6 sing 1251 n n 
C17 C18 PX6 sing 1252 n n 
C17 H31 PX6 sing 1253 n n 
C17 H32 PX6 sing 1254 n n 
C18 C19 PX6 sing 1255 n n 
C18 H33 PX6 sing 1256 n n 
C18 H34 PX6 sing 1257 n n 
C19 H35 PX6 sing 1258 n n 
C19 H36 PX6 sing 1259 n n 
C19 H37 PX6 sing 1260 n n 
O7 C20 PX6 sing 1261 n n 
C20 O8 PX6 doub 1262 n n 
C20 C21 PX6 sing 1263 n n 
C21 C22 PX6 sing 1264 n n 
C21 H38 PX6 sing 1265 n n 
C21 H39 PX6 sing 1266 n n 
C22 C23 PX6 sing 1267 n n 
C22 H40 PX6 sing 1268 n n 
C22 H41 PX6 sing 1269 n n 
C23 C24 PX6 sing 1270 n n 
C23 H42 PX6 sing 1271 n n 
C23 H43 PX6 sing 1272 n n 
C24 C25 PX6 sing 1273 n n 
C24 H44 PX6 sing 1274 n n 
C24 H45 PX6 sing 1275 n n 
C25 C26 PX6 sing 1276 n n 
C25 H46 PX6 sing 1277 n n 
C25 H47 PX6 sing 1278 n n 
C26 C27 PX6 sing 1279 n n 
C26 H48 PX6 sing 1280 n n 
C26 H49 PX6 sing 1281 n n 
C27 C28 PX6 sing 1282 n n 
C27 H50 PX6 sing 1283 n n 
C27 H51 PX6 sing 1284 n n 
C28 C29 PX6 sing 1285 n n 
C28 H52 PX6 sing 1286 n n 
C28 H53 PX6 sing 1287 n n 
C29 C30 PX6 sing 1288 n n 
C29 H54 PX6 sing 1289 n n 
C29 H55 PX6 sing 1290 n n 
C30 C31 PX6 sing 1291 n n 
C30 H56 PX6 sing 1292 n n 
C30 H57 PX6 sing 1293 n n 
C31 C32 PX6 sing 1294 n n 
C31 H58 PX6 sing 1295 n n 
C31 H59 PX6 sing 1296 n n 
C32 C33 PX6 sing 1297 n n 
C32 H60 PX6 sing 1298 n n 
C32 H61 PX6 sing 1299 n n 
C33 C34 PX6 sing 1300 n n 
C33 H62 PX6 sing 1301 n n 
C33 H63 PX6 sing 1302 n n 
C34 C35 PX6 sing 1303 n n 
C34 H64 PX6 sing 1304 n n 
C34 H65 PX6 sing 1305 n n 
C35 H66 PX6 sing 1306 n n 
C35 H67 PX6 sing 1307 n n 
C35 H68 PX6 sing 1308 n n 
#
_atom_sites.entry_id                     6HAW 
_atom_sites.fract_transf_matrix[1][1]    0.004702 
_atom_sites.fract_transf_matrix[1][2]    0.002715 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005429 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002881 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
K 11 6PE A 1 501 502 6PE 6PE . 
L 12 PGE A 1 502 501 PGE PGE . 
M 13 PO4 A 1 503 503 PO4 PO4 . 
N 13 PO4 A 1 504 504 PO4 PO4 . 
O 13 PO4 A 1 505 505 PO4 PO4 . 
P 14 CDL A 1 506 401 CDL CDL . 
Q 13 PO4 B 1 501 503 PO4 PO4 . 
R 15 PG4 B 1 502 501 PG4 PG4 . 
S 16 PX6 B 1 503 502 PX6 PX6 . 
T 17 HEM C 1 401 402 HEM HEM . 
U 17 HEM C 1 402 403 HEM HEM . 
V 18 LMT C 1 403 405 LMT LMT . 
W 14 CDL C 1 404 408 CDL CDL . 
X 19 PEE C 1 405 409 PEE PEE . 
Y 20 FX2 C 1 406 1001 FX2 2G7 . 
Z 12 PGE C 1 407 410 PGE PGE . 
AA 12 PGE C 1 408 411 PGE PGE . 
BA 12 PGE C 1 409 412 PGE PGE . 
CA 16 PX6 C 1 410 404 PX6 PX6 . 
DA 21 HEC D 1 501 501 HEC HEC . 
EA 13 PO4 D 1 502 502 PO4 PO4 . 
FA 14 CDL D 1 503 503 CDL CDL . 
GA 22 FES E 1 201 201 FES FES . 
HA 23 PX4 E 1 202 202 PX4 PX4 . 
IA 13 PO4 E 1 203 203 PO4 PO4 . 
JA 19 PEE E 1 204 204 PEE PEE . 
KA 14 CDL E 1 205 205 CDL CDL . 
LA 13 PO4 F 1 501 501 PO4 PO4 . 
MA 13 PO4 F 1 502 502 PO4 PO4 . 
NA 13 PO4 G 1 101 101 PO4 PO4 . 
OA 13 PO4 G 1 102 102 PO4 PO4 . 
PA 13 PO4 G 1 103 103 PO4 PO4 . 
QA 24 HOH A 1 601 1003 HOH HOH . 
QA 24 HOH A 2 602 1007 HOH HOH . 
QA 24 HOH A 3 603 1001 HOH HOH . 
QA 24 HOH A 4 604 1003 HOH HOH . 
QA 24 HOH A 5 605 1005 HOH HOH . 
QA 24 HOH A 6 606 1007 HOH HOH . 
QA 24 HOH A 7 607 1006 HOH HOH . 
QA 24 HOH A 8 608 1004 HOH HOH . 
QA 24 HOH A 9 609 1002 HOH HOH . 
QA 24 HOH A 10 610 1008 HOH HOH . 
RA 24 HOH B 1 601 1005 HOH HOH . 
RA 24 HOH B 2 602 1002 HOH HOH . 
RA 24 HOH B 3 603 1004 HOH HOH . 
RA 24 HOH B 4 604 1001 HOH HOH . 
SA 24 HOH C 1 501 1003 HOH HOH . 
SA 24 HOH C 2 502 1009 HOH HOH . 
SA 24 HOH C 3 503 1002 HOH HOH . 
SA 24 HOH C 4 504 1005 HOH HOH . 
SA 24 HOH C 5 505 1006 HOH HOH . 
SA 24 HOH C 6 506 1004 HOH HOH . 
SA 24 HOH C 7 507 1008 HOH HOH . 
SA 24 HOH C 8 508 1001 HOH HOH . 
TA 24 HOH D 1 1001 1001 HOH HOH . 
TA 24 HOH D 2 1002 1004 HOH HOH . 
TA 24 HOH D 3 1003 1003 HOH HOH . 
TA 24 HOH D 4 1004 1002 HOH HOH . 
UA 24 HOH E 1 1001 1001 HOH HOH . 
UA 24 HOH E 2 1002 1002 HOH HOH . 
VA 24 HOH H 1 1001 1001 HOH HOH . 
WA 24 HOH J 1 1001 1001 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 PX6 . . . S 16 -137.463 -17.085 0.807 1 158.12 ? O1 PX6 503 B 1 
HETATM 2 O O2 PX6 . . . S 16 -136.862 -15.108 -0.674 1 158.3 ? O2 PX6 503 B 1 
HETATM 3 P P1 PX6 . . . S 16 -137.844 -15.723 0.297 1 158.93 ? P1 PX6 503 B 1 
HETATM 4 O O3 PX6 . . . S 16 -138.306 -14.783 1.382 1 160.97 ? O3 PX6 503 B 1 
HETATM 5 O O4 PX6 . . . S 16 -139.176 -15.997 -0.569 1 160.73 ? O4 PX6 503 B 1 
HETATM 6 C C1 PX6 . . . S 16 -139.224 -16.926 -1.652 1 157.94 ? C1 PX6 503 B 1 
HETATM 7 C C2 PX6 . . . S 16 -138.836 -16.252 -2.965 1 156.3 ? C2 PX6 503 B 1 
HETATM 8 C C3 PX6 . . . S 16 -138.559 -17.328 -4.023 1 156.58 ? C3 PX6 503 B 1 
HETATM 9 O O5 PX6 . . . S 16 -139.694 -18.147 -4.294 1 159.2 ? O5 PX6 503 B 1 
HETATM 10 O O7 PX6 . . . S 16 -139.834 -15.262 -3.303 1 152.29 ? O7 PX6 503 B 1 
HETATM 11 C C20 PX6 . . . S 16 -140.093 -14.946 -4.709 1 143.41 ? C20 PX6 503 B 1 
HETATM 12 O O8 PX6 . . . S 16 -139.201 -14.521 -5.42 1 144.47 ? O8 PX6 503 B 1 
HETATM 13 C C21 PX6 . . . S 16 -141.464 -15.159 -5.306 1 134.8 ? C21 PX6 503 B 1 
HETATM 14 C C22 PX6 . . . S 16 -142.565 -14.891 -4.286 1 125.19 ? C22 PX6 503 B 1 
HETATM 15 C C23 PX6 . . . S 16 -143.374 -16.156 -3.998 1 118.31 ? C23 PX6 503 B 1 
HETATM 16 C C24 PX6 . . . S 16 -144.727 -16.143 -4.706 1 113.46 ? C24 PX6 503 B 1 
HETATM 17 C C25 PX6 . . . S 16 -145.334 -17.54 -4.797 1 110.1 ? C25 PX6 503 B 1 
#
_model_server_stats.io_time_ms              44 
_model_server_stats.parse_time_ms           37 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           17 
#