data_6HBD # _model_server_result.job_id Lgi8LYOAOVNhi8HeYQw9HQ _model_server_result.datetime_utc '2024-11-15 13:31:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hbd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":403}' # _entry.id 6HBD # _exptl.entry_id 6HBD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 15 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6HBD _cell.length_a 118.3 _cell.length_b 118.3 _cell.length_c 231.12 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HBD _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,T 1 1 B,M,N,O,P,Q,R,S,U 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 37 A GLU 37 1_555 J ZN ZN . A ZN 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.871 ? metalc ? metalc2 A OD1 ASP 88 A ASP 88 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.878 ? metalc ? metalc3 A OD2 ASP 112 A ASP 112 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc4 A OE1 GLU 126 A GLU 126 1_555 P ZN ZN . B ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.902 ? metalc ? metalc5 A OD1 ASP 158 A ASP 158 1_555 F ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc6 A OD2 ASP 162 A ASP 162 1_555 F ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc7 A OE1 GLU 222 A GLU 222 1_555 J ZN ZN . A ZN 408 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc8 A ND1 HIS 244 A HIS 244 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc9 A OD1 ASP 245 A ASP 245 1_555 C ZN ZN . A ZN 401 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.86 ? metalc ? metalc10 A OE1 GLU 260 A GLU 260 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc11 A OE2 GLU 260 A GLU 260 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc12 A OE1 GLU 291 A GLU 291 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc13 A NE2 HIS 315 A HIS 315 1_555 N ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc14 A NE2 HIS 316 A HIS 316 1_555 G ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc15 A NE2 HIS 317 A HIS 317 1_555 I ZN ZN . A ZN 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.909 ? metalc ? metalc16 A NE2 HIS 318 A HIS 318 1_555 G ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc17 A ND1 HIS 318 A HIS 318 1_555 H ZN ZN . A ZN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc18 A NE2 HIS 319 A HIS 319 1_555 I ZN ZN . A ZN 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.889 ? metalc ? metalc19 A NE2 HIS 320 A HIS 320 1_555 H ZN ZN . A ZN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc20 C ZN ZN . A ZN 401 1_555 T O HOH . A HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc21 C ZN ZN . A ZN 401 1_555 T O HOH . A HOH 506 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? metalc ? metalc22 C ZN ZN . A ZN 401 1_555 T O HOH . A HOH 516 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc23 D ZN ZN . A ZN 402 1_555 T O HOH . A HOH 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc24 D ZN ZN . A ZN 402 1_555 B NE2 HIS 315 B HIS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc25 E ZN ZN . A ZN 403 10_455 B ND1 HIS 319 B HIS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? metalc ? metalc26 G ZN ZN . A ZN 405 1_555 T O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc27 H ZN ZN . A ZN 406 1_555 B OE1 GLU 126 B GLU 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.865 ? metalc ? metalc28 H ZN ZN . A ZN 406 1_555 U O HOH . B HOH 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc29 I ZN ZN . A ZN 407 1_555 T O HOH . A HOH 518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc30 T O HOH . A HOH 510 1_555 P ZN ZN . B ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? metalc ? metalc31 B OD2 ASP 162 B ASP 162 1_555 M ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc32 B ND1 HIS 244 B HIS 244 1_555 R ZN ZN . B ZN 406 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? metalc ? metalc33 B OD1 ASP 245 B ASP 245 1_555 R ZN ZN . B ZN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc34 B OE1 GLU 260 B GLU 260 1_555 N ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc35 B OE2 GLU 260 B GLU 260 1_555 N ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc36 B OE2 GLU 291 B GLU 291 1_555 N ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc37 B NE2 HIS 316 B HIS 316 1_555 Q ZN ZN . B ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc38 B NE2 HIS 317 B HIS 317 1_555 O ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc39 B ND1 HIS 318 B HIS 318 1_555 P ZN ZN . B ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc40 B NE2 HIS 318 B HIS 318 1_555 Q ZN ZN . B ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc41 B NE2 HIS 319 B HIS 319 1_555 O ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.928 ? metalc ? metalc42 B NE2 HIS 320 B HIS 320 1_555 P ZN ZN . B ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc43 N ZN ZN . B ZN 402 1_555 U O HOH . B HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc44 O ZN ZN . B ZN 403 1_555 U O HOH . B HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc45 Q ZN ZN . B ZN 405 1_555 U O HOH . B HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? metalc ? metalc46 Q ZN ZN . B ZN 405 1_555 U O HOH . B HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6HBD _atom_sites.fract_transf_matrix[1][1] 0.008453 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008453 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004327 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 401 2 ZN ZN . D 2 ZN A 1 402 3 ZN ZN . E 2 ZN A 1 403 4 ZN ZN . F 2 ZN A 1 404 5 ZN ZN . G 2 ZN A 1 405 8 ZN ZN . H 2 ZN A 1 406 9 ZN ZN . I 2 ZN A 1 407 10 ZN ZN . J 2 ZN A 1 408 18 ZN ZN . K 2 ZN A 1 409 21 ZN ZN . L 3 GZL A 1 410 1 GZL GZL . M 2 ZN B 1 401 6 ZN ZN . N 2 ZN B 1 402 7 ZN ZN . O 2 ZN B 1 403 11 ZN ZN . P 2 ZN B 1 404 13 ZN ZN . Q 2 ZN B 1 405 14 ZN ZN . R 2 ZN B 1 406 16 ZN ZN . S 3 GZL B 1 407 2 GZL GZL . T 4 HOH A 1 501 51 HOH HOH . T 4 HOH A 2 502 37 HOH HOH . T 4 HOH A 3 503 14 HOH HOH . T 4 HOH A 4 504 57 HOH HOH . T 4 HOH A 5 505 54 HOH HOH . T 4 HOH A 6 506 22 HOH HOH . T 4 HOH A 7 507 38 HOH HOH . T 4 HOH A 8 508 44 HOH HOH . T 4 HOH A 9 509 39 HOH HOH . T 4 HOH A 10 510 43 HOH HOH . T 4 HOH A 11 511 33 HOH HOH . T 4 HOH A 12 512 9 HOH HOH . T 4 HOH A 13 513 41 HOH HOH . T 4 HOH A 14 514 45 HOH HOH . T 4 HOH A 15 515 20 HOH HOH . T 4 HOH A 16 516 23 HOH HOH . T 4 HOH A 17 517 19 HOH HOH . T 4 HOH A 18 518 17 HOH HOH . T 4 HOH A 19 519 42 HOH HOH . T 4 HOH A 20 520 26 HOH HOH . U 4 HOH B 1 501 8 HOH HOH . U 4 HOH B 2 502 48 HOH HOH . U 4 HOH B 3 503 21 HOH HOH . U 4 HOH B 4 504 56 HOH HOH . U 4 HOH B 5 505 55 HOH HOH . U 4 HOH B 6 506 34 HOH HOH . U 4 HOH B 7 507 24 HOH HOH . U 4 HOH B 8 508 28 HOH HOH . U 4 HOH B 9 509 18 HOH HOH . U 4 HOH B 10 510 50 HOH HOH . U 4 HOH B 11 511 31 HOH HOH . U 4 HOH B 12 512 35 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x -75.119 _atom_site.Cartn_y 2.161 _atom_site.Cartn_z 10.32 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 93.26 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 403 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #