data_6HBD
#
_model_server_result.job_id            3vVFK8zLOtLENz1FfQiYeA 
_model_server_result.datetime_utc      '2024-11-15 13:27:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6hbd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":403}' 
#
_entry.id    6HBD 
#
_exptl.entry_id    6HBD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    15 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6HBD 
_cell.length_a            118.3 
_cell.length_b            118.3 
_cell.length_c            231.12 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6HBD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        98 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 41 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,T 1 1 
B,M,N,O,P,Q,R,S,U 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 37 A GLU 37 1_555 J ZN ZN . A ZN 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.871 ? 
metalc ? metalc2 A OD1 ASP 88 A ASP 88 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.878 ? 
metalc ? metalc3 A OD2 ASP 112 A ASP 112 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
metalc ? metalc4 A OE1 GLU 126 A GLU 126 1_555 P ZN ZN . B ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.902 ? 
metalc ? metalc5 A OD1 ASP 158 A ASP 158 1_555 F ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? 
metalc ? metalc6 A OD2 ASP 162 A ASP 162 1_555 F ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? 
metalc ? metalc7 A OE1 GLU 222 A GLU 222 1_555 J ZN ZN . A ZN 408 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? 
metalc ? metalc8 A ND1 HIS 244 A HIS 244 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? 
metalc ? metalc9 A OD1 ASP 245 A ASP 245 1_555 C ZN ZN . A ZN 401 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.86 ? 
metalc ? metalc10 A OE1 GLU 260 A GLU 260 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? 
metalc ? metalc11 A OE2 GLU 260 A GLU 260 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? 
metalc ? metalc12 A OE1 GLU 291 A GLU 291 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
metalc ? metalc13 A NE2 HIS 315 A HIS 315 1_555 N ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? 
metalc ? metalc14 A NE2 HIS 316 A HIS 316 1_555 G ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? 
metalc ? metalc15 A NE2 HIS 317 A HIS 317 1_555 I ZN ZN . A ZN 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.909 ? 
metalc ? metalc16 A NE2 HIS 318 A HIS 318 1_555 G ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
metalc ? metalc17 A ND1 HIS 318 A HIS 318 1_555 H ZN ZN . A ZN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? 
metalc ? metalc18 A NE2 HIS 319 A HIS 319 1_555 I ZN ZN . A ZN 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.889 ? 
metalc ? metalc19 A NE2 HIS 320 A HIS 320 1_555 H ZN ZN . A ZN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? 
metalc ? metalc20 C ZN ZN . A ZN 401 1_555 T O HOH . A HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? 
metalc ? metalc21 C ZN ZN . A ZN 401 1_555 T O HOH . A HOH 506 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? 
metalc ? metalc22 C ZN ZN . A ZN 401 1_555 T O HOH . A HOH 516 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? 
metalc ? metalc23 D ZN ZN . A ZN 402 1_555 T O HOH . A HOH 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? 
metalc ? metalc24 D ZN ZN . A ZN 402 1_555 B NE2 HIS 315 B HIS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? 
metalc ? metalc25 E ZN ZN . A ZN 403 10_455 B ND1 HIS 319 B HIS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? 
metalc ? metalc26 G ZN ZN . A ZN 405 1_555 T O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? 
metalc ? metalc27 H ZN ZN . A ZN 406 1_555 B OE1 GLU 126 B GLU 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.865 ? 
metalc ? metalc28 H ZN ZN . A ZN 406 1_555 U O HOH . B HOH 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? 
metalc ? metalc29 I ZN ZN . A ZN 407 1_555 T O HOH . A HOH 518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? 
metalc ? metalc30 T O HOH . A HOH 510 1_555 P ZN ZN . B ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? 
metalc ? metalc31 B OD2 ASP 162 B ASP 162 1_555 M ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? 
metalc ? metalc32 B ND1 HIS 244 B HIS 244 1_555 R ZN ZN . B ZN 406 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? 
metalc ? metalc33 B OD1 ASP 245 B ASP 245 1_555 R ZN ZN . B ZN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? 
metalc ? metalc34 B OE1 GLU 260 B GLU 260 1_555 N ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? 
metalc ? metalc35 B OE2 GLU 260 B GLU 260 1_555 N ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? 
metalc ? metalc36 B OE2 GLU 291 B GLU 291 1_555 N ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? 
metalc ? metalc37 B NE2 HIS 316 B HIS 316 1_555 Q ZN ZN . B ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? 
metalc ? metalc38 B NE2 HIS 317 B HIS 317 1_555 O ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
metalc ? metalc39 B ND1 HIS 318 B HIS 318 1_555 P ZN ZN . B ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? 
metalc ? metalc40 B NE2 HIS 318 B HIS 318 1_555 Q ZN ZN . B ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? 
metalc ? metalc41 B NE2 HIS 319 B HIS 319 1_555 O ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.928 ? 
metalc ? metalc42 B NE2 HIS 320 B HIS 320 1_555 P ZN ZN . B ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? 
metalc ? metalc43 N ZN ZN . B ZN 402 1_555 U O HOH . B HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? 
metalc ? metalc44 O ZN ZN . B ZN 403 1_555 U O HOH . B HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? 
metalc ? metalc45 Q ZN ZN . B ZN 405 1_555 U O HOH . B HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? 
metalc ? metalc46 Q ZN ZN . B ZN 405 1_555 U O HOH . B HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6HBD 
_atom_sites.fract_transf_matrix[1][1]    0.008453 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008453 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004327 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 401 2 ZN ZN . 
D 2 ZN A 1 402 3 ZN ZN . 
E 2 ZN A 1 403 4 ZN ZN . 
F 2 ZN A 1 404 5 ZN ZN . 
G 2 ZN A 1 405 8 ZN ZN . 
H 2 ZN A 1 406 9 ZN ZN . 
I 2 ZN A 1 407 10 ZN ZN . 
J 2 ZN A 1 408 18 ZN ZN . 
K 2 ZN A 1 409 21 ZN ZN . 
L 3 GZL A 1 410 1 GZL GZL . 
M 2 ZN B 1 401 6 ZN ZN . 
N 2 ZN B 1 402 7 ZN ZN . 
O 2 ZN B 1 403 11 ZN ZN . 
P 2 ZN B 1 404 13 ZN ZN . 
Q 2 ZN B 1 405 14 ZN ZN . 
R 2 ZN B 1 406 16 ZN ZN . 
S 3 GZL B 1 407 2 GZL GZL . 
T 4 HOH A 1 501 51 HOH HOH . 
T 4 HOH A 2 502 37 HOH HOH . 
T 4 HOH A 3 503 14 HOH HOH . 
T 4 HOH A 4 504 57 HOH HOH . 
T 4 HOH A 5 505 54 HOH HOH . 
T 4 HOH A 6 506 22 HOH HOH . 
T 4 HOH A 7 507 38 HOH HOH . 
T 4 HOH A 8 508 44 HOH HOH . 
T 4 HOH A 9 509 39 HOH HOH . 
T 4 HOH A 10 510 43 HOH HOH . 
T 4 HOH A 11 511 33 HOH HOH . 
T 4 HOH A 12 512 9 HOH HOH . 
T 4 HOH A 13 513 41 HOH HOH . 
T 4 HOH A 14 514 45 HOH HOH . 
T 4 HOH A 15 515 20 HOH HOH . 
T 4 HOH A 16 516 23 HOH HOH . 
T 4 HOH A 17 517 19 HOH HOH . 
T 4 HOH A 18 518 17 HOH HOH . 
T 4 HOH A 19 519 42 HOH HOH . 
T 4 HOH A 20 520 26 HOH HOH . 
U 4 HOH B 1 501 8 HOH HOH . 
U 4 HOH B 2 502 48 HOH HOH . 
U 4 HOH B 3 503 21 HOH HOH . 
U 4 HOH B 4 504 56 HOH HOH . 
U 4 HOH B 5 505 55 HOH HOH . 
U 4 HOH B 6 506 34 HOH HOH . 
U 4 HOH B 7 507 24 HOH HOH . 
U 4 HOH B 8 508 28 HOH HOH . 
U 4 HOH B 9 509 18 HOH HOH . 
U 4 HOH B 10 510 50 HOH HOH . 
U 4 HOH B 11 511 31 HOH HOH . 
U 4 HOH B 12 512 35 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         O 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -44.432 
_atom_site.Cartn_y               3.623 
_atom_site.Cartn_z               10.483 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        57.89 
_atom_site.pdbx_formal_charge    2 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           403 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    37 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#