data_6HBD # _model_server_result.job_id F7mz2R9RtBbJagNAwtBdUA _model_server_result.datetime_utc '2024-11-15 13:25:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hbd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":410}' # _entry.id 6HBD # _exptl.entry_id 6HBD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description beta-D-galactofuranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6HBD _cell.length_a 118.3 _cell.length_b 118.3 _cell.length_c 231.12 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HBD _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,T 1 1 B,M,N,O,P,Q,R,S,U 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 L N N ? 3 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 37 A GLU 37 1_555 J ZN ZN . A ZN 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.871 ? metalc ? metalc2 A OD1 ASP 88 A ASP 88 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.878 ? metalc ? metalc3 A OD2 ASP 112 A ASP 112 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc4 A OE1 GLU 126 A GLU 126 1_555 P ZN ZN . B ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.902 ? metalc ? metalc5 A OD1 ASP 158 A ASP 158 1_555 F ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc6 A OD2 ASP 162 A ASP 162 1_555 F ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc7 A OE1 GLU 222 A GLU 222 1_555 J ZN ZN . A ZN 408 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc8 A ND1 HIS 244 A HIS 244 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc9 A OD1 ASP 245 A ASP 245 1_555 C ZN ZN . A ZN 401 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.86 ? metalc ? metalc10 A OE1 GLU 260 A GLU 260 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc11 A OE2 GLU 260 A GLU 260 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc12 A OE1 GLU 291 A GLU 291 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc13 A NE2 HIS 315 A HIS 315 1_555 N ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc14 A NE2 HIS 316 A HIS 316 1_555 G ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc15 A NE2 HIS 317 A HIS 317 1_555 I ZN ZN . A ZN 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.909 ? metalc ? metalc16 A NE2 HIS 318 A HIS 318 1_555 G ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc17 A ND1 HIS 318 A HIS 318 1_555 H ZN ZN . A ZN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc18 A NE2 HIS 319 A HIS 319 1_555 I ZN ZN . A ZN 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.889 ? metalc ? metalc19 A NE2 HIS 320 A HIS 320 1_555 H ZN ZN . A ZN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc20 C ZN ZN . A ZN 401 1_555 T O HOH . A HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc21 C ZN ZN . A ZN 401 1_555 T O HOH . A HOH 506 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? metalc ? metalc22 C ZN ZN . A ZN 401 1_555 T O HOH . A HOH 516 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc23 D ZN ZN . A ZN 402 1_555 T O HOH . A HOH 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc24 D ZN ZN . A ZN 402 1_555 B NE2 HIS 315 B HIS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc25 E ZN ZN . A ZN 403 10_455 B ND1 HIS 319 B HIS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? metalc ? metalc26 G ZN ZN . A ZN 405 1_555 T O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc27 H ZN ZN . A ZN 406 1_555 B OE1 GLU 126 B GLU 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.865 ? metalc ? metalc28 H ZN ZN . A ZN 406 1_555 U O HOH . B HOH 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc29 I ZN ZN . A ZN 407 1_555 T O HOH . A HOH 518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc30 T O HOH . A HOH 510 1_555 P ZN ZN . B ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? metalc ? metalc31 B OD2 ASP 162 B ASP 162 1_555 M ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc32 B ND1 HIS 244 B HIS 244 1_555 R ZN ZN . B ZN 406 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? metalc ? metalc33 B OD1 ASP 245 B ASP 245 1_555 R ZN ZN . B ZN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc34 B OE1 GLU 260 B GLU 260 1_555 N ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc35 B OE2 GLU 260 B GLU 260 1_555 N ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc36 B OE2 GLU 291 B GLU 291 1_555 N ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc37 B NE2 HIS 316 B HIS 316 1_555 Q ZN ZN . B ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc38 B NE2 HIS 317 B HIS 317 1_555 O ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc39 B ND1 HIS 318 B HIS 318 1_555 P ZN ZN . B ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc40 B NE2 HIS 318 B HIS 318 1_555 Q ZN ZN . B ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc41 B NE2 HIS 319 B HIS 319 1_555 O ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.928 ? metalc ? metalc42 B NE2 HIS 320 B HIS 320 1_555 P ZN ZN . B ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc43 N ZN ZN . B ZN 402 1_555 U O HOH . B HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc44 O ZN ZN . B ZN 403 1_555 U O HOH . B HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc45 Q ZN ZN . B ZN 405 1_555 U O HOH . B HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? metalc ? metalc46 Q ZN ZN . B ZN 405 1_555 U O HOH . B HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id GZL _chem_comp.mon_nstd_flag . _chem_comp.name beta-D-galactofuranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms beta-D-galactose;D-galactose;galactose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 C5 GZL sing 129 n n C6 O6 GZL sing 130 n n C5 C4 GZL sing 131 n n C5 O5 GZL sing 132 n n C5 H5 GZL sing 133 n n C4 C3 GZL sing 134 n n C4 O4 GZL sing 135 n n C3 C2 GZL sing 136 n n C3 O3 GZL sing 137 n n C3 H3 GZL sing 138 n n C2 C1 GZL sing 139 n n C2 O2 GZL sing 140 n n C2 H2 GZL sing 141 n n O4 C1 GZL sing 142 n n C6 H61 GZL sing 143 n n C6 H62 GZL sing 144 n n O6 HO6 GZL sing 145 n n C4 H4 GZL sing 146 n n O5 HO5 GZL sing 147 n n O3 HO3 GZL sing 148 n n C1 H1 GZL sing 149 n n O2 HO2 GZL sing 150 n n C1 O1 GZL sing 151 n n O1 HO1 GZL sing 152 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version GZL DGalfb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 GZL b-D-galactofuranose 'COMMON NAME' GMML 1 GZL b-D-Galf 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 GZL Gal 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6HBD _atom_sites.fract_transf_matrix[1][1] 0.008453 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008453 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004327 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 401 2 ZN ZN . D 2 ZN A 1 402 3 ZN ZN . E 2 ZN A 1 403 4 ZN ZN . F 2 ZN A 1 404 5 ZN ZN . G 2 ZN A 1 405 8 ZN ZN . H 2 ZN A 1 406 9 ZN ZN . I 2 ZN A 1 407 10 ZN ZN . J 2 ZN A 1 408 18 ZN ZN . K 2 ZN A 1 409 21 ZN ZN . L 3 GZL A 1 410 1 GZL GZL . M 2 ZN B 1 401 6 ZN ZN . N 2 ZN B 1 402 7 ZN ZN . O 2 ZN B 1 403 11 ZN ZN . P 2 ZN B 1 404 13 ZN ZN . Q 2 ZN B 1 405 14 ZN ZN . R 2 ZN B 1 406 16 ZN ZN . S 3 GZL B 1 407 2 GZL GZL . T 4 HOH A 1 501 51 HOH HOH . T 4 HOH A 2 502 37 HOH HOH . T 4 HOH A 3 503 14 HOH HOH . T 4 HOH A 4 504 57 HOH HOH . T 4 HOH A 5 505 54 HOH HOH . T 4 HOH A 6 506 22 HOH HOH . T 4 HOH A 7 507 38 HOH HOH . T 4 HOH A 8 508 44 HOH HOH . T 4 HOH A 9 509 39 HOH HOH . T 4 HOH A 10 510 43 HOH HOH . T 4 HOH A 11 511 33 HOH HOH . T 4 HOH A 12 512 9 HOH HOH . T 4 HOH A 13 513 41 HOH HOH . T 4 HOH A 14 514 45 HOH HOH . T 4 HOH A 15 515 20 HOH HOH . T 4 HOH A 16 516 23 HOH HOH . T 4 HOH A 17 517 19 HOH HOH . T 4 HOH A 18 518 17 HOH HOH . T 4 HOH A 19 519 42 HOH HOH . T 4 HOH A 20 520 26 HOH HOH . U 4 HOH B 1 501 8 HOH HOH . U 4 HOH B 2 502 48 HOH HOH . U 4 HOH B 3 503 21 HOH HOH . U 4 HOH B 4 504 56 HOH HOH . U 4 HOH B 5 505 55 HOH HOH . U 4 HOH B 6 506 34 HOH HOH . U 4 HOH B 7 507 24 HOH HOH . U 4 HOH B 8 508 28 HOH HOH . U 4 HOH B 9 509 18 HOH HOH . U 4 HOH B 10 510 50 HOH HOH . U 4 HOH B 11 511 31 HOH HOH . U 4 HOH B 12 512 35 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C6 GZL . . . L 3 -55.371 13.912 21.426 1 46.65 ? C6 GZL 410 A 1 HETATM 2 C C5 GZL . . . L 3 -56.533 14.814 21.783 1 48.07 ? C5 GZL 410 A 1 HETATM 3 C C4 GZL . . . L 3 -56.72 14.942 23.285 1 47.4 ? C4 GZL 410 A 1 HETATM 4 C C3 GZL . . . L 3 -55.534 15.534 24.039 1 47.1 ? C3 GZL 410 A 1 HETATM 5 C C2 GZL . . . L 3 -56.219 16.083 25.276 1 46.92 ? C2 GZL 410 A 1 HETATM 6 O O6 GZL . . . L 3 -55.346 13.681 20.023 1 49.02 ? O6 GZL 410 A 1 HETATM 7 O O5 GZL . . . L 3 -57.737 14.38 21.144 1 50.31 ? O5 GZL 410 A 1 HETATM 8 O O4 GZL . . . L 3 -57.793 15.871 23.556 1 47.9 ? O4 GZL 410 A 1 HETATM 9 O O3 GZL . . . L 3 -54.527 14.604 24.401 1 46.14 ? O3 GZL 410 A 1 HETATM 10 C C1 GZL . . . L 3 -57.457 16.716 24.665 1 47.76 ? C1 GZL 410 A 1 HETATM 11 O O2 GZL . . . L 3 -55.462 17.053 25.984 1 50.3 ? O2 GZL 410 A 1 HETATM 12 O O1 GZL . . . L 3 -58.377 16.625 25.693 1 49.07 ? O1 GZL 410 A 1 HETATM 13 H H61 GZL . . . L 3 -55.486 12.924 21.87 1 47.18 ? H61 GZL 410 A 1 HETATM 14 H H62 GZL . . . L 3 -54.413 14.301 21.766 1 47.18 ? H62 GZL 410 A 1 HETATM 15 H HO6 GZL . . . L 3 -54.512 14.082 19.662 1 48.73 ? HO6 GZL 410 A 1 HETATM 16 H H5 GZL . . . L 3 -56.412 15.806 21.349 1 48.67 ? H5 GZL 410 A 1 HETATM 17 H H4 GZL . . . L 3 -56.969 13.964 23.694 1 48.29 ? H4 GZL 410 A 1 HETATM 18 H HO5 GZL . . . L 3 -57.564 13.616 20.534 1 51.58 ? HO5 GZL 410 A 1 HETATM 19 H H3 GZL . . . L 3 -55.065 16.337 23.473 1 47.76 ? H3 GZL 410 A 1 HETATM 20 H HO3 GZL . . . L 3 -53.743 15.196 24.543 1 46.7 ? HO3 GZL 410 A 1 HETATM 21 H H2 GZL . . . L 3 -56.455 15.255 25.944 1 46.5 ? H2 GZL 410 A 1 HETATM 22 H H1 GZL . . . L 3 -57.358 17.723 24.264 1 48.01 ? H1 GZL 410 A 1 HETATM 23 H HO2 GZL . . . L 3 -54.628 17.244 25.48 1 47.83 ? HO2 GZL 410 A 1 HETATM 24 H HO1 GZL . . . L 3 -59.274 16.873 25.349 1 49.29 ? HO1 GZL 410 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 36 _model_server_stats.create_model_time_ms 58 _model_server_stats.query_time_ms 380 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 24 #