data_6HBM
#
_model_server_result.job_id            Qo4-NJRGMSe7SWVefRCBBw 
_model_server_result.datetime_utc      '2025-06-28 14:20:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6hbm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":406}' 
#
_entry.id    6HBM 
#
_exptl.entry_id    6HBM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              150.13 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            alpha-L-arabinofuranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6HBM 
_cell.length_a            119.5 
_cell.length_b            119.5 
_cell.length_c            234.77 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6HBM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        98 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 41 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,Q 1 1 
B,K,L,M,N,O,P,R 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 J N N 
? 3 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 37 A GLU 37 1_555 H ZN ZN . A ZN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.875 ? 
metalc ? metalc2 A OD1 ASP 88 A ASP 88 1_555 I ZN ZN . A ZN 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? 
metalc ? metalc3 A OD2 ASP 112 A ASP 112 1_555 I ZN ZN . A ZN 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.869 ? 
metalc ? metalc4 A OE1 GLU 126 A GLU 126 1_555 M ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.905 ? 
metalc ? metalc5 A ND1 HIS 244 A HIS 244 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? 
metalc ? metalc6 A OD1 ASP 245 A ASP 245 1_555 C ZN ZN . A ZN 401 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? 
metalc ? metalc7 A OD2 ASP 245 A ASP 245 1_555 C ZN ZN . A ZN 401 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? 
metalc ? metalc8 A OE1 GLU 260 A GLU 260 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? 
metalc ? metalc9 A OE2 GLU 260 A GLU 260 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? 
metalc ? metalc10 A OE1 GLU 291 A GLU 291 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? 
metalc ? metalc11 A NE2 HIS 315 A HIS 315 1_555 K ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? 
metalc ? metalc12 A NE2 HIS 316 A HIS 316 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
metalc ? metalc13 A NE2 HIS 317 A HIS 317 1_555 G ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
metalc ? metalc14 A NE2 HIS 318 A HIS 318 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? 
metalc ? metalc15 A ND1 HIS 318 A HIS 318 1_555 F ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? 
metalc ? metalc16 A NE2 HIS 319 A HIS 319 1_555 G ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? 
metalc ? metalc17 A NE2 HIS 320 A HIS 320 1_555 F ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? 
metalc ? metalc18 C ZN ZN . A ZN 401 1_555 Q O HOH . A HOH 505 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? 
metalc ? metalc19 C ZN ZN . A ZN 401 1_555 Q O HOH . A HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? 
metalc ? metalc20 C ZN ZN . A ZN 401 1_555 Q O HOH . A HOH 506 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? 
metalc ? metalc21 D ZN ZN . A ZN 402 1_555 B NE2 HIS 315 B HIS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? 
metalc ? metalc22 F ZN ZN . A ZN 404 1_555 B OE1 GLU 126 B GLU 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? 
metalc ? metalc23 F ZN ZN . A ZN 404 1_555 R O HOH . B HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? 
metalc ? metalc24 G ZN ZN . A ZN 405 1_555 Q O HOH . A HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
metalc ? metalc25 I ZN ZN . A ZN 407 10_455 B ND1 HIS 319 B HIS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
metalc ? metalc26 B ND1 HIS 244 B HIS 244 1_555 O ZN ZN . B ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
metalc ? metalc27 B OD1 ASP 245 B ASP 245 1_555 O ZN ZN . B ZN 405 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? 
metalc ? metalc28 B OE1 GLU 260 B GLU 260 1_555 K ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? 
metalc ? metalc29 B OE2 GLU 260 B GLU 260 1_555 K ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? 
metalc ? metalc30 B OE2 GLU 291 B GLU 291 1_555 K ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? 
metalc ? metalc31 B NE2 HIS 316 B HIS 316 1_555 N ZN ZN . B ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? 
metalc ? metalc32 B NE2 HIS 317 B HIS 317 1_555 L ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? 
metalc ? metalc33 B ND1 HIS 318 B HIS 318 1_555 M ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? 
metalc ? metalc34 B NE2 HIS 318 B HIS 318 1_555 N ZN ZN . B ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.914 ? 
metalc ? metalc35 B NE2 HIS 319 B HIS 319 1_555 L ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? 
metalc ? metalc36 B NE2 HIS 320 B HIS 320 1_555 M ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? 
metalc ? metalc37 K ZN ZN . B ZN 401 1_555 R O HOH . B HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
metalc ? metalc38 L ZN ZN . B ZN 402 1_555 R O HOH . B HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? 
metalc ? metalc39 N ZN ZN . B ZN 404 1_555 R O HOH . B HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? 
metalc ? metalc40 O ZN ZN . B ZN 405 1_555 R O HOH . B HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? 
#
_chem_comp.formula           'C5 H10 O5' 
_chem_comp.formula_weight    150.13 
_chem_comp.id                AHR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              alpha-L-arabinofuranose 
_chem_comp.type              'l-saccharide, alpha linking' 
_chem_comp.pdbx_synonyms     alpha-L-arabinose;L-arabinose;arabinose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O5 C5 AHR sing 1 n n 
O5 HO5 AHR sing 2 n n 
C5 C4 AHR sing 3 n n 
C5 H51 AHR sing 4 n n 
C5 H52 AHR sing 5 n n 
C4 O4 AHR sing 6 n n 
C4 C3 AHR sing 7 n n 
C4 H4 AHR sing 8 n n 
O4 C1 AHR sing 9 n n 
C3 O3 AHR sing 10 n n 
C3 C2 AHR sing 11 n n 
C3 H3 AHR sing 12 n n 
O3 HO3 AHR sing 13 n n 
C2 O2 AHR sing 14 n n 
C2 C1 AHR sing 15 n n 
C2 H2 AHR sing 16 n n 
O2 HO2 AHR sing 17 n n 
C1 O1 AHR sing 18 n n 
C1 H1 AHR sing 19 n n 
O1 HO1 AHR sing 20 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
AHR LArafa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
AHR a-L-arabinofuranose 'COMMON NAME' GMML 1 
AHR a-L-Araf 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
AHR Ara 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     6HBM 
_atom_sites.fract_transf_matrix[1][1]    0.008368 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008368 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004259 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 401 2 ZN ZN . 
D 2 ZN A 1 402 3 ZN ZN . 
E 2 ZN A 1 403 8 ZN ZN . 
F 2 ZN A 1 404 9 ZN ZN . 
G 2 ZN A 1 405 10 ZN ZN . 
H 2 ZN A 1 406 22 ZN ZN . 
I 2 ZN A 1 407 23 ZN ZN . 
J 3 AHR A 1 408 1 AHR AHR . 
K 2 ZN B 1 401 7 ZN ZN . 
L 2 ZN B 1 402 11 ZN ZN . 
M 2 ZN B 1 403 13 ZN ZN . 
N 2 ZN B 1 404 14 ZN ZN . 
O 2 ZN B 1 405 19 ZN ZN . 
P 3 AHR B 1 406 2 AHR AHR . 
Q 4 HOH A 1 501 61 HOH HOH . 
Q 4 HOH A 2 502 50 HOH HOH . 
Q 4 HOH A 3 503 62 HOH HOH . 
Q 4 HOH A 4 504 49 HOH HOH . 
Q 4 HOH A 5 505 60 HOH HOH . 
Q 4 HOH A 6 506 22 HOH HOH . 
Q 4 HOH A 7 507 17 HOH HOH . 
Q 4 HOH A 8 508 7 HOH HOH . 
R 4 HOH B 1 501 25 HOH HOH . 
R 4 HOH B 2 502 21 HOH HOH . 
R 4 HOH B 3 503 18 HOH HOH . 
R 4 HOH B 4 504 54 HOH HOH . 
R 4 HOH B 5 505 28 HOH HOH . 
R 4 HOH B 6 506 66 HOH HOH . 
R 4 HOH B 7 507 31 HOH HOH . 
R 4 HOH B 8 508 65 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O5 AHR . . . P 3 -25.372 8.117 -0.868 0.7 24.77 ? O5 AHR 406 B 1 
HETATM 2 C C5 AHR . . . P 3 -26.662 7.811 -1.403 0.7 23.56 ? C5 AHR 406 B 1 
HETATM 3 C C4 AHR . . . P 3 -27.774 8.158 -0.432 0.7 25.24 ? C4 AHR 406 B 1 
HETATM 4 O O4 AHR . . . P 3 -27.992 7.074 0.511 0.7 31.36 ? O4 AHR 406 B 1 
HETATM 5 C C3 AHR . . . P 3 -29.132 8.409 -1.069 0.7 21.68 ? C3 AHR 406 B 1 
HETATM 6 O O3 AHR . . . P 3 -29.185 9.746 -1.539 0.7 21 ? O3 AHR 406 B 1 
HETATM 7 C C2 AHR . . . P 3 -30.078 8.083 0.087 0.7 22.3 ? C2 AHR 406 B 1 
HETATM 8 O O2 AHR . . . P 3 -31.396 7.844 -0.394 0.7 19.97 ? O2 AHR 406 B 1 
HETATM 9 C C1 AHR . . . P 3 -29.403 6.838 0.671 0.7 26.38 ? C1 AHR 406 B 1 
HETATM 10 O O1 AHR . . . P 3 -29.737 6.584 2.039 0.7 23.74 ? O1 AHR 406 B 1 
HETATM 11 H HO5 AHR . . . P 3 -24.817 8.355 -1.655 0.7 19.85 ? HO5 AHR 406 B 1 
HETATM 12 H H51 AHR . . . P 3 -26.658 6.737 -1.583 0.7 19.85 ? H51 AHR 406 B 1 
HETATM 13 H H52 AHR . . . P 3 -26.808 8.305 -2.362 0.7 19.85 ? H52 AHR 406 B 1 
HETATM 14 H H4 AHR . . . P 3 -27.472 9.015 0.167 0.7 19.85 ? H4 AHR 406 B 1 
HETATM 15 H H3 AHR . . . P 3 -29.307 7.745 -1.914 0.7 19.85 ? H3 AHR 406 B 1 
HETATM 16 H HO3 AHR . . . P 3 -29.235 10.339 -0.744 0.7 19.85 ? HO3 AHR 406 B 1 
HETATM 17 H H2 AHR . . . P 3 -30.115 8.909 0.796 0.7 19.85 ? H2 AHR 406 B 1 
HETATM 18 H HO2 AHR . . . P 3 -31.825 7.249 0.276 0.7 19.85 ? HO2 AHR 406 B 1 
HETATM 19 H H1 AHR . . . P 3 -29.667 5.908 0.17 0.7 19.85 ? H1 AHR 406 B 1 
HETATM 20 H HO1 AHR . . . P 3 -29.059 5.977 2.436 0.7 19.85 ? HO1 AHR 406 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           319 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           20 
#