data_6HBT # _model_server_result.job_id yXahOxx-waIS8H8xed8kQA _model_server_result.datetime_utc '2024-10-11 05:24:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hbt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":103}' # _entry.id 6HBT # _exptl.entry_id 6HBT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 172.231 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(4-carbamimidamidobutyl)guanidine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6HBT _cell.length_a 55.46 _cell.length_b 55.46 _cell.length_c 135.04 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HBT _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 18_655 -x+4/3,-x+y+2/3,-z+2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 55.46 32.019846 90.026667 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' A 16 A A 16 1_555 A P CBV 17 A CBV 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.604 ? covale ? covale2 A O3' CBV 17 A CBV 17 1_555 A P C 18 A C 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.61 ? hydrog WATSON-CRICK hydrog1 A N1 G 1 A G 1 1_555 A N3 C 18 A C 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 G 1 A G 1 1_555 A O2 C 18 A C 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 G 1 A G 1 1_555 A N4 C 18 A C 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 G 2 A G 2 1_555 A N3 CBV 17 A CBV 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 G 2 A G 2 1_555 A O2 CBV 17 A CBV 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 G 2 A G 2 1_555 A N4 CBV 17 A CBV 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 U 3 A U 3 1_555 A N1 A 16 A A 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O4 U 3 A U 3 1_555 A N6 A 16 A A 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N1 G 4 A G 4 1_555 A N3 C 15 A C 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N2 G 4 A G 4 1_555 A O2 C 15 A C 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A O6 G 4 A G 4 1_555 A N4 C 15 A C 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N1 G 5 A G 5 1_555 A N3 C 14 A C 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N2 G 5 A G 5 1_555 A O2 C 14 A C 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A O6 G 5 A G 5 1_555 A N4 C 14 A C 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N1 G 6 A G 6 1_555 A N3 C 13 A C 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N2 G 6 A G 6 1_555 A O2 C 13 A C 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A O6 G 6 A G 6 1_555 A N4 C 13 A C 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N1 G 7 A G 7 1_555 A N3 C 12 A C 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N2 G 7 A G 7 1_555 A O2 C 12 A C 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A O6 G 7 A G 7 1_555 A N4 C 12 A C 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C6 H16 N6' _chem_comp.formula_weight 172.231 _chem_comp.id FXQ _chem_comp.mon_nstd_flag . _chem_comp.name 1-(4-carbamimidamidobutyl)guanidine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NAB CAK FXQ doub 112 n n CAH CAI FXQ sing 113 n n CAH CAG FXQ sing 114 n n NAJ CAK FXQ sing 115 n n NAJ CAI FXQ sing 116 n n CAK NAL FXQ sing 117 n n NAA CAD FXQ doub 118 n n CAF CAG FXQ sing 119 n n CAF NAE FXQ sing 120 n n CAD NAE FXQ sing 121 n n CAD NAC FXQ sing 122 n n CAF HAF FXQ sing 123 n n CAF HAG FXQ sing 124 n n CAG HAH FXQ sing 125 n n CAG HAI FXQ sing 126 n n CAH HAJ FXQ sing 127 n n CAH HAK FXQ sing 128 n n CAI HAM FXQ sing 129 n n CAI HAL FXQ sing 130 n n NAA HAR FXQ sing 131 n n NAB HAS FXQ sing 132 n n NAC HAO FXQ sing 133 n n NAC HAC FXQ sing 134 n n NAE HAE FXQ sing 135 n n NAJ HAN FXQ sing 136 n n NAL HAP FXQ sing 137 n n NAL HAQ FXQ sing 138 n n # _atom_sites.entry_id 6HBT _atom_sites.fract_transf_matrix[1][1] 0.018031 _atom_sites.fract_transf_matrix[1][2] 0.01041 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02082 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007405 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 101 1 SO4 SO4 . C 2 SO4 A 1 102 2 SO4 SO4 . D 3 FXQ A 1 103 1 FXQ DRG . E 4 HOH A 1 201 20 HOH HOH . E 4 HOH A 2 202 33 HOH HOH . E 4 HOH A 3 203 8 HOH HOH . E 4 HOH A 4 204 24 HOH HOH . E 4 HOH A 5 205 10 HOH HOH . E 4 HOH A 6 206 17 HOH HOH . E 4 HOH A 7 207 7 HOH HOH . E 4 HOH A 8 208 32 HOH HOH . E 4 HOH A 9 209 3 HOH HOH . E 4 HOH A 10 210 40 HOH HOH . E 4 HOH A 11 211 5 HOH HOH . E 4 HOH A 12 212 35 HOH HOH . E 4 HOH A 13 213 6 HOH HOH . E 4 HOH A 14 214 25 HOH HOH . E 4 HOH A 15 215 16 HOH HOH . E 4 HOH A 16 216 26 HOH HOH . E 4 HOH A 17 217 2 HOH HOH . E 4 HOH A 18 218 14 HOH HOH . E 4 HOH A 19 219 4 HOH HOH . E 4 HOH A 20 220 19 HOH HOH . E 4 HOH A 21 221 38 HOH HOH . E 4 HOH A 22 222 1 HOH HOH . E 4 HOH A 23 223 13 HOH HOH . E 4 HOH A 24 224 34 HOH HOH . E 4 HOH A 25 225 22 HOH HOH . E 4 HOH A 26 226 15 HOH HOH . E 4 HOH A 27 227 29 HOH HOH . E 4 HOH A 28 228 21 HOH HOH . E 4 HOH A 29 229 11 HOH HOH . E 4 HOH A 30 230 28 HOH HOH . E 4 HOH A 31 231 37 HOH HOH . E 4 HOH A 32 232 9 HOH HOH . E 4 HOH A 33 233 31 HOH HOH . E 4 HOH A 34 234 27 HOH HOH . E 4 HOH A 35 235 39 HOH HOH . E 4 HOH A 36 236 12 HOH HOH . E 4 HOH A 37 237 36 HOH HOH . E 4 HOH A 38 238 18 HOH HOH . E 4 HOH A 39 239 23 HOH HOH . E 4 HOH A 40 240 30 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAD FXQ . . . D 3 13.492 32.618 45.43 0.5 45.7 ? CAD FXQ 103 A 1 HETATM 2 C CAF FXQ . . . D 3 14.771 34.756 45.293 0.5 57.67 ? CAF FXQ 103 A 1 HETATM 3 C CAG FXQ . . . D 3 16.169 35.225 45.657 0.5 57.12 ? CAG FXQ 103 A 1 HETATM 4 C CAH FXQ . . . D 3 16.933 35.676 44.382 0.5 54.71 ? CAH FXQ 103 A 1 HETATM 5 C CAI FXQ . . . D 3 18.09 36.637 44.771 0.5 60.27 ? CAI FXQ 103 A 1 HETATM 6 C CAK FXQ . . . D 3 20.518 36.592 44.715 0.5 46.69 ? CAK FXQ 103 A 1 HETATM 7 N NAA FXQ . . . D 3 12.391 33.225 44.975 0.5 43.08 ? NAA FXQ 103 A 1 HETATM 8 N NAB FXQ . . . D 3 21.645 36.089 44.225 0.5 46.22 ? NAB FXQ 103 A 1 HETATM 9 N NAC FXQ . . . D 3 13.432 31.339 45.797 0.5 41.44 ? NAC FXQ 103 A 1 HETATM 10 N NAE FXQ . . . D 3 14.609 33.329 45.66 0.5 53.86 ? NAE FXQ 103 A 1 HETATM 11 N NAJ FXQ . . . D 3 19.365 36.017 44.386 0.5 55.97 ? NAJ FXQ 103 A 1 HETATM 12 N NAL FXQ . . . D 3 20.536 37.903 45.024 0.5 41.17 ? NAL FXQ 103 A 1 HETATM 13 H HAF FXQ . . . D 3 14.636 34.858 44.338 0.5 69.25 ? HAF FXQ 103 A 1 HETATM 14 H HAG FXQ . . . D 3 14.117 35.29 45.771 0.5 69.25 ? HAG FXQ 103 A 1 HETATM 15 H HAH FXQ . . . D 3 16.102 35.973 46.271 0.5 68.59 ? HAH FXQ 103 A 1 HETATM 16 H HAI FXQ . . . D 3 16.654 34.502 46.085 0.5 68.59 ? HAI FXQ 103 A 1 HETATM 17 H HAJ FXQ . . . D 3 17.304 34.887 43.955 0.5 65.69 ? HAJ FXQ 103 A 1 HETATM 18 H HAK FXQ . . . D 3 16.329 36.122 43.769 0.5 65.69 ? HAK FXQ 103 A 1 HETATM 19 H HAM FXQ . . . D 3 18.073 36.847 45.718 0.5 72.37 ? HAM FXQ 103 A 1 HETATM 20 H HAL FXQ . . . D 3 17.933 37.422 44.223 0.5 72.37 ? HAL FXQ 103 A 1 HETATM 21 H HAR FXQ . . . D 3 11.678 32.767 44.828 0.5 51.74 ? HAR FXQ 103 A 1 HETATM 22 H HAS FXQ . . . D 3 21.679 35.211 44.084 0.5 55.51 ? HAS FXQ 103 A 1 HETATM 23 H HAO FXQ . . . D 3 12.69 30.91 45.74 0.5 49.77 ? HAO FXQ 103 A 1 HETATM 24 H HAC FXQ . . . D 3 14.137 30.943 46.09 0.5 49.77 ? HAC FXQ 103 A 1 HETATM 25 H HAE FXQ . . . D 3 15.267 32.971 46.082 0.5 64.68 ? HAE FXQ 103 A 1 HETATM 26 H HAN FXQ . . . D 3 19.363 35.694 43.557 0.5 67.2 ? HAN FXQ 103 A 1 HETATM 27 H HAP FXQ . . . D 3 21.322 38.269 45.224 0.5 49.45 ? HAP FXQ 103 A 1 HETATM 28 H HAQ FXQ . . . D 3 19.815 38.243 45.421 0.5 49.45 ? HAQ FXQ 103 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #