data_6HC8 # _model_server_result.job_id 7O4TUIAGzb83k9SEYnxjZA _model_server_result.datetime_utc '2024-11-25 03:41:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hc8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":406}' # _entry.id 6HC8 # _exptl.entry_id 6HC8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6HC8 _cell.length_a 86.86 _cell.length_b 86.86 _cell.length_c 148.12 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HC8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_465 y-1,x+1,-z 0 1 0 1 0 0 0 0 -1 -86.86 86.86 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N ? 6 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 200 A HIS 199 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc2 A OD2 ASP 202 A ASP 201 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc3 A NE2 HIS 280 A HIS 279 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc4 C ZN ZN . A ZN 401 1_555 D O2' OGA . A OGA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? metalc ? metalc5 C ZN ZN . A ZN 401 1_555 D O2 OGA . A OGA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc6 C ZN ZN . A ZN 401 1_555 I O HOH . A HOH 573 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6HC8 _atom_sites.fract_transf_matrix[1][1] 0.011513 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011513 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006751 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 401 1 ZN ZN . D 4 OGA A 1 402 1 OGA OGA . E 5 SO4 A 1 403 4 SO4 SO4 . F 6 GOL A 1 404 1 GOL GOL . G 6 GOL A 1 405 5 GOL GOL . H 6 GOL A 1 406 6 GOL GOL . I 7 HOH A 1 501 142 HOH HOH . I 7 HOH A 2 502 58 HOH HOH . I 7 HOH A 3 503 173 HOH HOH . I 7 HOH A 4 504 232 HOH HOH . I 7 HOH A 5 505 66 HOH HOH . I 7 HOH A 6 506 50 HOH HOH . I 7 HOH A 7 507 162 HOH HOH . I 7 HOH A 8 508 129 HOH HOH . I 7 HOH A 9 509 82 HOH HOH . I 7 HOH A 10 510 210 HOH HOH . I 7 HOH A 11 511 39 HOH HOH . I 7 HOH A 12 512 102 HOH HOH . I 7 HOH A 13 513 65 HOH HOH . I 7 HOH A 14 514 228 HOH HOH . I 7 HOH A 15 515 8 HOH HOH . I 7 HOH A 16 516 16 HOH HOH . I 7 HOH A 17 517 31 HOH HOH . I 7 HOH A 18 518 69 HOH HOH . I 7 HOH A 19 519 23 HOH HOH . I 7 HOH A 20 520 54 HOH HOH . I 7 HOH A 21 521 79 HOH HOH . I 7 HOH A 22 522 172 HOH HOH . I 7 HOH A 23 523 101 HOH HOH . I 7 HOH A 24 524 113 HOH HOH . I 7 HOH A 25 525 135 HOH HOH . I 7 HOH A 26 526 42 HOH HOH . I 7 HOH A 27 527 150 HOH HOH . I 7 HOH A 28 528 36 HOH HOH . I 7 HOH A 29 529 4 HOH HOH . I 7 HOH A 30 530 170 HOH HOH . I 7 HOH A 31 531 37 HOH HOH . I 7 HOH A 32 532 158 HOH HOH . I 7 HOH A 33 533 19 HOH HOH . I 7 HOH A 34 534 20 HOH HOH . I 7 HOH A 35 535 24 HOH HOH . I 7 HOH A 36 536 52 HOH HOH . I 7 HOH A 37 537 18 HOH HOH . I 7 HOH A 38 538 40 HOH HOH . I 7 HOH A 39 539 38 HOH HOH . I 7 HOH A 40 540 105 HOH HOH . I 7 HOH A 41 541 17 HOH HOH . I 7 HOH A 42 542 225 HOH HOH . I 7 HOH A 43 543 14 HOH HOH . I 7 HOH A 44 544 62 HOH HOH . I 7 HOH A 45 545 203 HOH HOH . I 7 HOH A 46 546 15 HOH HOH . I 7 HOH A 47 547 1 HOH HOH . I 7 HOH A 48 548 51 HOH HOH . I 7 HOH A 49 549 61 HOH HOH . I 7 HOH A 50 550 186 HOH HOH . I 7 HOH A 51 551 28 HOH HOH . I 7 HOH A 52 552 35 HOH HOH . I 7 HOH A 53 553 2 HOH HOH . I 7 HOH A 54 554 5 HOH HOH . I 7 HOH A 55 555 33 HOH HOH . I 7 HOH A 56 556 21 HOH HOH . I 7 HOH A 57 557 11 HOH HOH . I 7 HOH A 58 558 9 HOH HOH . I 7 HOH A 59 559 12 HOH HOH . I 7 HOH A 60 560 216 HOH HOH . I 7 HOH A 61 561 149 HOH HOH . I 7 HOH A 62 562 7 HOH HOH . I 7 HOH A 63 563 156 HOH HOH . I 7 HOH A 64 564 3 HOH HOH . I 7 HOH A 65 565 146 HOH HOH . I 7 HOH A 66 566 46 HOH HOH . I 7 HOH A 67 567 10 HOH HOH . I 7 HOH A 68 568 97 HOH HOH . I 7 HOH A 69 569 6 HOH HOH . I 7 HOH A 70 570 22 HOH HOH . I 7 HOH A 71 571 30 HOH HOH . I 7 HOH A 72 572 144 HOH HOH . I 7 HOH A 73 573 55 HOH HOH . I 7 HOH A 74 574 249 HOH HOH . I 7 HOH A 75 575 63 HOH HOH . I 7 HOH A 76 576 44 HOH HOH . I 7 HOH A 77 577 70 HOH HOH . I 7 HOH A 78 578 151 HOH HOH . I 7 HOH A 79 579 107 HOH HOH . I 7 HOH A 80 580 116 HOH HOH . I 7 HOH A 81 581 166 HOH HOH . I 7 HOH A 82 582 211 HOH HOH . I 7 HOH A 83 583 34 HOH HOH . I 7 HOH A 84 584 160 HOH HOH . I 7 HOH A 85 585 29 HOH HOH . I 7 HOH A 86 586 64 HOH HOH . I 7 HOH A 87 587 26 HOH HOH . I 7 HOH A 88 588 133 HOH HOH . I 7 HOH A 89 589 72 HOH HOH . I 7 HOH A 90 590 91 HOH HOH . I 7 HOH A 91 591 43 HOH HOH . I 7 HOH A 92 592 59 HOH HOH . I 7 HOH A 93 593 32 HOH HOH . I 7 HOH A 94 594 123 HOH HOH . I 7 HOH A 95 595 25 HOH HOH . I 7 HOH A 96 596 174 HOH HOH . I 7 HOH A 97 597 176 HOH HOH . I 7 HOH A 98 598 104 HOH HOH . I 7 HOH A 99 599 103 HOH HOH . I 7 HOH A 100 600 13 HOH HOH . I 7 HOH A 101 601 114 HOH HOH . I 7 HOH A 102 602 143 HOH HOH . I 7 HOH A 103 603 157 HOH HOH . I 7 HOH A 104 604 92 HOH HOH . I 7 HOH A 105 605 41 HOH HOH . I 7 HOH A 106 606 75 HOH HOH . I 7 HOH A 107 607 168 HOH HOH . I 7 HOH A 108 608 47 HOH HOH . I 7 HOH A 109 609 87 HOH HOH . I 7 HOH A 110 610 49 HOH HOH . I 7 HOH A 111 611 115 HOH HOH . I 7 HOH A 112 612 111 HOH HOH . I 7 HOH A 113 613 153 HOH HOH . I 7 HOH A 114 614 221 HOH HOH . I 7 HOH A 115 615 96 HOH HOH . I 7 HOH A 116 616 57 HOH HOH . I 7 HOH A 117 617 181 HOH HOH . I 7 HOH A 118 618 99 HOH HOH . I 7 HOH A 119 619 78 HOH HOH . I 7 HOH A 120 620 187 HOH HOH . I 7 HOH A 121 621 132 HOH HOH . I 7 HOH A 122 622 56 HOH HOH . I 7 HOH A 123 623 125 HOH HOH . I 7 HOH A 124 624 109 HOH HOH . I 7 HOH A 125 625 88 HOH HOH . I 7 HOH A 126 626 242 HOH HOH . I 7 HOH A 127 627 80 HOH HOH . I 7 HOH A 128 628 68 HOH HOH . I 7 HOH A 129 629 209 HOH HOH . I 7 HOH A 130 630 145 HOH HOH . I 7 HOH A 131 631 169 HOH HOH . I 7 HOH A 132 632 86 HOH HOH . I 7 HOH A 133 633 84 HOH HOH . I 7 HOH A 134 634 93 HOH HOH . I 7 HOH A 135 635 67 HOH HOH . I 7 HOH A 136 636 202 HOH HOH . I 7 HOH A 137 637 108 HOH HOH . I 7 HOH A 138 638 95 HOH HOH . I 7 HOH A 139 639 227 HOH HOH . I 7 HOH A 140 640 126 HOH HOH . I 7 HOH A 141 641 205 HOH HOH . J 7 HOH E 1 401 83 HOH HOH . J 7 HOH E 2 402 165 HOH HOH . J 7 HOH E 3 403 184 HOH HOH . J 7 HOH E 4 404 27 HOH HOH . J 7 HOH E 5 405 76 HOH HOH . J 7 HOH E 6 406 222 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 6 -41.478 33.281 -19.306 1 91.92 ? C1 GOL 406 A 1 HETATM 2 O O1 GOL . . . H 6 -42.617 33.912 -18.756 1 92.12 ? O1 GOL 406 A 1 HETATM 3 C C2 GOL . . . H 6 -40.488 34.323 -19.822 1 90.91 ? C2 GOL 406 A 1 HETATM 4 O O2 GOL . . . H 6 -40.711 35.587 -19.243 1 93.85 ? O2 GOL 406 A 1 HETATM 5 C C3 GOL . . . H 6 -39.063 33.922 -19.501 1 86.01 ? C3 GOL 406 A 1 HETATM 6 O O3 GOL . . . H 6 -38.267 35.075 -19.603 1 84.67 ? O3 GOL 406 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 6 #