data_6HC9 # _model_server_result.job_id vMr2677lFObbHItQkVeYcA _model_server_result.datetime_utc '2024-11-27 15:21:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hc9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 6HC9 # _exptl.entry_id 6HC9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6HC9 _cell.length_a 97.656 _cell.length_b 121.942 _cell.length_c 47.442 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HC9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 206 A CYS 206 1_555 A SG CYS 261 A CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 B SG CYS 206 B CYS 206 1_555 B SG CYS 261 B CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 192 n n C1 C2 GOL sing 193 n n C1 H11 GOL sing 194 n n C1 H12 GOL sing 195 n n O1 HO1 GOL sing 196 n n C2 O2 GOL sing 197 n n C2 C3 GOL sing 198 n n C2 H2 GOL sing 199 n n O2 HO2 GOL sing 200 n n C3 O3 GOL sing 201 n n C3 H31 GOL sing 202 n n C3 H32 GOL sing 203 n n O3 HO3 GOL sing 204 n n # _atom_sites.entry_id 6HC9 _atom_sites.fract_transf_matrix[1][1] 0.01024 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008201 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021078 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 301 2 GOL GOL . D 3 CL A 1 302 3 CL CL . E 4 GLU A 1 303 1 GLU GLU . F 5 SO4 A 1 304 1 SO4 SO4 . G 5 SO4 A 1 305 7 SO4 SO4 . H 5 SO4 A 1 306 8 SO4 SO4 . I 6 PEG A 1 307 1 PEG PEG . J 6 PEG A 1 308 2 PEG PEG . K 7 PGE A 1 309 1 PGE PGE . L 3 CL B 1 301 2 CL CL . M 3 CL B 1 302 4 CL CL . N 3 CL B 1 303 8 CL CL . O 3 CL B 1 304 9 CL CL . P 3 CL B 1 305 10 CL CL . Q 3 CL B 1 306 11 CL CL . R 4 GLU B 1 307 2 GLU GLU . S 5 SO4 B 1 308 4 SO4 SO4 . T 5 SO4 B 1 309 5 SO4 SO4 . U 5 SO4 B 1 310 6 SO4 SO4 . V 5 SO4 B 1 311 9 SO4 SO4 . W 5 SO4 B 1 312 10 SO4 SO4 . X 8 FXW B 1 313 900 FXW TD2 . Y 6 PEG B 1 314 4 PEG PEG . Z 9 HOH A 1 401 170 HOH HOH . Z 9 HOH A 2 402 42 HOH HOH . Z 9 HOH A 3 403 72 HOH HOH . Z 9 HOH A 4 404 219 HOH HOH . Z 9 HOH A 5 405 90 HOH HOH . Z 9 HOH A 6 406 74 HOH HOH . Z 9 HOH A 7 407 4 HOH HOH . Z 9 HOH A 8 408 12 HOH HOH . Z 9 HOH A 9 409 213 HOH HOH . Z 9 HOH A 10 410 71 HOH HOH . Z 9 HOH A 11 411 57 HOH HOH . Z 9 HOH A 12 412 18 HOH HOH . Z 9 HOH A 13 413 116 HOH HOH . Z 9 HOH A 14 414 7 HOH HOH . Z 9 HOH A 15 415 152 HOH HOH . Z 9 HOH A 16 416 67 HOH HOH . Z 9 HOH A 17 417 127 HOH HOH . Z 9 HOH A 18 418 112 HOH HOH . Z 9 HOH A 19 419 163 HOH HOH . Z 9 HOH A 20 420 15 HOH HOH . Z 9 HOH A 21 421 272 HOH HOH . Z 9 HOH A 22 422 218 HOH HOH . Z 9 HOH A 23 423 27 HOH HOH . Z 9 HOH A 24 424 145 HOH HOH . Z 9 HOH A 25 425 113 HOH HOH . Z 9 HOH A 26 426 80 HOH HOH . Z 9 HOH A 27 427 36 HOH HOH . Z 9 HOH A 28 428 26 HOH HOH . Z 9 HOH A 29 429 30 HOH HOH . Z 9 HOH A 30 430 55 HOH HOH . Z 9 HOH A 31 431 124 HOH HOH . Z 9 HOH A 32 432 11 HOH HOH . Z 9 HOH A 33 433 2 HOH HOH . Z 9 HOH A 34 434 121 HOH HOH . Z 9 HOH A 35 435 88 HOH HOH . Z 9 HOH A 36 436 81 HOH HOH . Z 9 HOH A 37 437 19 HOH HOH . Z 9 HOH A 38 438 84 HOH HOH . Z 9 HOH A 39 439 204 HOH HOH . Z 9 HOH A 40 440 13 HOH HOH . Z 9 HOH A 41 441 61 HOH HOH . Z 9 HOH A 42 442 130 HOH HOH . Z 9 HOH A 43 443 114 HOH HOH . Z 9 HOH A 44 444 271 HOH HOH . Z 9 HOH A 45 445 70 HOH HOH . Z 9 HOH A 46 446 58 HOH HOH . Z 9 HOH A 47 447 43 HOH HOH . Z 9 HOH A 48 448 196 HOH HOH . Z 9 HOH A 49 449 50 HOH HOH . Z 9 HOH A 50 450 25 HOH HOH . Z 9 HOH A 51 451 268 HOH HOH . Z 9 HOH A 52 452 37 HOH HOH . Z 9 HOH A 53 453 212 HOH HOH . Z 9 HOH A 54 454 6 HOH HOH . Z 9 HOH A 55 455 31 HOH HOH . Z 9 HOH A 56 456 110 HOH HOH . Z 9 HOH A 57 457 201 HOH HOH . Z 9 HOH A 58 458 79 HOH HOH . Z 9 HOH A 59 459 47 HOH HOH . Z 9 HOH A 60 460 221 HOH HOH . Z 9 HOH A 61 461 277 HOH HOH . Z 9 HOH A 62 462 191 HOH HOH . Z 9 HOH A 63 463 34 HOH HOH . Z 9 HOH A 64 464 142 HOH HOH . Z 9 HOH A 65 465 69 HOH HOH . Z 9 HOH A 66 466 135 HOH HOH . Z 9 HOH A 67 467 187 HOH HOH . Z 9 HOH A 68 468 260 HOH HOH . Z 9 HOH A 69 469 273 HOH HOH . Z 9 HOH A 70 470 171 HOH HOH . Z 9 HOH A 71 471 158 HOH HOH . Z 9 HOH A 72 472 139 HOH HOH . Z 9 HOH A 73 473 133 HOH HOH . Z 9 HOH A 74 474 125 HOH HOH . Z 9 HOH A 75 475 169 HOH HOH . Z 9 HOH A 76 476 202 HOH HOH . Z 9 HOH A 77 477 174 HOH HOH . Z 9 HOH A 78 478 194 HOH HOH . Z 9 HOH A 79 479 278 HOH HOH . Z 9 HOH A 80 480 223 HOH HOH . Z 9 HOH A 81 481 151 HOH HOH . Z 9 HOH A 82 482 65 HOH HOH . Z 9 HOH A 83 483 192 HOH HOH . Z 9 HOH A 84 484 138 HOH HOH . Z 9 HOH A 85 485 111 HOH HOH . Z 9 HOH A 86 486 123 HOH HOH . Z 9 HOH A 87 487 122 HOH HOH . Z 9 HOH A 88 488 224 HOH HOH . Z 9 HOH A 89 489 177 HOH HOH . Z 9 HOH A 90 490 227 HOH HOH . Z 9 HOH A 91 491 275 HOH HOH . Z 9 HOH A 92 492 195 HOH HOH . Z 9 HOH A 93 493 182 HOH HOH . Z 9 HOH A 94 494 189 HOH HOH . Z 9 HOH A 95 495 258 HOH HOH . Z 9 HOH A 96 496 184 HOH HOH . Z 9 HOH A 97 497 188 HOH HOH . Z 9 HOH A 98 498 117 HOH HOH . Z 9 HOH A 99 499 269 HOH HOH . Z 9 HOH A 100 500 203 HOH HOH . Z 9 HOH A 101 501 159 HOH HOH . Z 9 HOH A 102 502 176 HOH HOH . Z 9 HOH A 103 503 274 HOH HOH . Z 9 HOH A 104 504 263 HOH HOH . Z 9 HOH A 105 505 267 HOH HOH . Z 9 HOH A 106 506 214 HOH HOH . Z 9 HOH A 107 507 216 HOH HOH . Z 9 HOH A 108 508 266 HOH HOH . Z 9 HOH A 109 509 248 HOH HOH . Z 9 HOH A 110 510 126 HOH HOH . Z 9 HOH A 111 511 208 HOH HOH . Z 9 HOH A 112 512 215 HOH HOH . Z 9 HOH A 113 513 141 HOH HOH . AA 9 HOH B 1 401 66 HOH HOH . AA 9 HOH B 2 402 199 HOH HOH . AA 9 HOH B 3 403 64 HOH HOH . AA 9 HOH B 4 404 193 HOH HOH . AA 9 HOH B 5 405 140 HOH HOH . AA 9 HOH B 6 406 56 HOH HOH . AA 9 HOH B 7 407 93 HOH HOH . AA 9 HOH B 8 408 137 HOH HOH . AA 9 HOH B 9 409 52 HOH HOH . AA 9 HOH B 10 410 75 HOH HOH . AA 9 HOH B 11 411 5 HOH HOH . AA 9 HOH B 12 412 131 HOH HOH . AA 9 HOH B 13 413 239 HOH HOH . AA 9 HOH B 14 414 32 HOH HOH . AA 9 HOH B 15 415 276 HOH HOH . AA 9 HOH B 16 416 245 HOH HOH . AA 9 HOH B 17 417 9 HOH HOH . AA 9 HOH B 18 418 94 HOH HOH . AA 9 HOH B 19 419 253 HOH HOH . AA 9 HOH B 20 420 173 HOH HOH . AA 9 HOH B 21 421 40 HOH HOH . AA 9 HOH B 22 422 73 HOH HOH . AA 9 HOH B 23 423 24 HOH HOH . AA 9 HOH B 24 424 232 HOH HOH . AA 9 HOH B 25 425 45 HOH HOH . AA 9 HOH B 26 426 89 HOH HOH . AA 9 HOH B 27 427 144 HOH HOH . AA 9 HOH B 28 428 10 HOH HOH . AA 9 HOH B 29 429 78 HOH HOH . AA 9 HOH B 30 430 87 HOH HOH . AA 9 HOH B 31 431 59 HOH HOH . AA 9 HOH B 32 432 14 HOH HOH . AA 9 HOH B 33 433 1 HOH HOH . AA 9 HOH B 34 434 255 HOH HOH . AA 9 HOH B 35 435 162 HOH HOH . AA 9 HOH B 36 436 241 HOH HOH . AA 9 HOH B 37 437 85 HOH HOH . AA 9 HOH B 38 438 35 HOH HOH . AA 9 HOH B 39 439 91 HOH HOH . AA 9 HOH B 40 440 21 HOH HOH . AA 9 HOH B 41 441 128 HOH HOH . AA 9 HOH B 42 442 82 HOH HOH . AA 9 HOH B 43 443 247 HOH HOH . AA 9 HOH B 44 444 243 HOH HOH . AA 9 HOH B 45 445 149 HOH HOH . AA 9 HOH B 46 446 83 HOH HOH . AA 9 HOH B 47 447 8 HOH HOH . AA 9 HOH B 48 448 92 HOH HOH . AA 9 HOH B 49 449 279 HOH HOH . AA 9 HOH B 50 450 62 HOH HOH . AA 9 HOH B 51 451 39 HOH HOH . AA 9 HOH B 52 452 254 HOH HOH . AA 9 HOH B 53 453 41 HOH HOH . AA 9 HOH B 54 454 53 HOH HOH . AA 9 HOH B 55 455 136 HOH HOH . AA 9 HOH B 56 456 86 HOH HOH . AA 9 HOH B 57 457 16 HOH HOH . AA 9 HOH B 58 458 44 HOH HOH . AA 9 HOH B 59 459 240 HOH HOH . AA 9 HOH B 60 460 22 HOH HOH . AA 9 HOH B 61 461 33 HOH HOH . AA 9 HOH B 62 462 186 HOH HOH . AA 9 HOH B 63 463 20 HOH HOH . AA 9 HOH B 64 464 265 HOH HOH . AA 9 HOH B 65 465 256 HOH HOH . AA 9 HOH B 66 466 17 HOH HOH . AA 9 HOH B 67 467 165 HOH HOH . AA 9 HOH B 68 468 185 HOH HOH . AA 9 HOH B 69 469 143 HOH HOH . AA 9 HOH B 70 470 28 HOH HOH . AA 9 HOH B 71 471 242 HOH HOH . AA 9 HOH B 72 472 118 HOH HOH . AA 9 HOH B 73 473 228 HOH HOH . AA 9 HOH B 74 474 48 HOH HOH . AA 9 HOH B 75 475 250 HOH HOH . AA 9 HOH B 76 476 249 HOH HOH . AA 9 HOH B 77 477 257 HOH HOH . AA 9 HOH B 78 478 148 HOH HOH . AA 9 HOH B 79 479 217 HOH HOH . AA 9 HOH B 80 480 119 HOH HOH . AA 9 HOH B 81 481 49 HOH HOH . AA 9 HOH B 82 482 161 HOH HOH . AA 9 HOH B 83 483 115 HOH HOH . AA 9 HOH B 84 484 156 HOH HOH . AA 9 HOH B 85 485 236 HOH HOH . AA 9 HOH B 86 486 252 HOH HOH . AA 9 HOH B 87 487 200 HOH HOH . AA 9 HOH B 88 488 76 HOH HOH . AA 9 HOH B 89 489 246 HOH HOH . AA 9 HOH B 90 490 229 HOH HOH . AA 9 HOH B 91 491 198 HOH HOH . AA 9 HOH B 92 492 95 HOH HOH . AA 9 HOH B 93 493 120 HOH HOH . AA 9 HOH B 94 494 230 HOH HOH . AA 9 HOH B 95 495 244 HOH HOH . AA 9 HOH B 96 496 231 HOH HOH . AA 9 HOH B 97 497 233 HOH HOH . AA 9 HOH B 98 498 172 HOH HOH . AA 9 HOH B 99 499 197 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 11.706 172.277 -33.518 1 59.62 ? C1 GOL 301 A 1 HETATM 2 O O1 GOL . . . C 2 10.846 172.768 -34.521 1 57.95 ? O1 GOL 301 A 1 HETATM 3 C C2 GOL . . . C 2 13.159 172.539 -33.899 1 59.89 ? C2 GOL 301 A 1 HETATM 4 O O2 GOL . . . C 2 13.218 173.494 -34.934 1 59.13 ? O2 GOL 301 A 1 HETATM 5 C C3 GOL . . . C 2 13.818 171.244 -34.357 1 62.15 ? C3 GOL 301 A 1 HETATM 6 O O3 GOL . . . C 2 14.108 170.425 -33.247 1 63.45 ? O3 GOL 301 A 1 HETATM 7 H H11 GOL . . . C 2 11.548 171.206 -33.392 1 71.54 ? H11 GOL 301 A 1 HETATM 8 H H12 GOL . . . C 2 11.482 172.766 -32.571 1 71.54 ? H12 GOL 301 A 1 HETATM 9 H HO1 GOL . . . C 2 9.92 172.536 -34.299 1 69.54 ? HO1 GOL 301 A 1 HETATM 10 H H2 GOL . . . C 2 13.69 172.91 -33.022 1 71.87 ? H2 GOL 301 A 1 HETATM 11 H HO2 GOL . . . C 2 14.154 173.66 -35.171 1 70.96 ? HO2 GOL 301 A 1 HETATM 12 H H31 GOL . . . C 2 14.739 171.472 -34.895 1 74.58 ? H31 GOL 301 A 1 HETATM 13 H H32 GOL . . . C 2 13.152 170.715 -35.039 1 74.58 ? H32 GOL 301 A 1 HETATM 14 H HO3 GOL . . . C 2 14.608 169.636 -33.545 1 76.14 ? HO3 GOL 301 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #