data_6HCE # _model_server_result.job_id SqZN5XLBHGhhF43BmHVKxA _model_server_result.datetime_utc '2024-10-19 16:28:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hce # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6HCE # _exptl.entry_id 6HCE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6HCE _cell.length_a 110.008 _cell.length_b 110.008 _cell.length_c 71.629 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HCE _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 49 A CYS 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 A SG CYS 41 A CYS 41 1_555 A SG CYS 90 A CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf3 A SG CYS 50 A CYS 50 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 74 A CYS 74 1_555 A SG CYS 155 A CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf5 A SG CYS 81 A CYS 81 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf6 A SG CYS 116 A CYS 116 1_555 A SG CYS 186 A CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf7 A SG CYS 120 A CYS 120 1_555 A SG CYS 169 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 A SG CYS 133 A CYS 133 1_555 A SG CYS 151 A CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf9 A SG CYS 184 A CYS 184 1_555 A SG CYS 219 A CYS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 A ND2 ASN 53 A ASN 53 1_555 C C1 NAG . A NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.512 ? covale ? covale2 A ND2 ASN 164 A ASN 164 1_555 B C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.541 ? covale ? covale3 A C SEP 213 A SEP 213 1_555 A N SEP 214 A SEP 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C SEP 214 A SEP 214 1_555 A N GLU 215 A GLU 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 265 n n C1 O1 NAG sing 266 n n C1 O5 NAG sing 267 n n C1 H1 NAG sing 268 n n C2 C3 NAG sing 269 n n C2 N2 NAG sing 270 n n C2 H2 NAG sing 271 n n C3 C4 NAG sing 272 n n C3 O3 NAG sing 273 n n C3 H3 NAG sing 274 n n C4 C5 NAG sing 275 n n C4 O4 NAG sing 276 n n C4 H4 NAG sing 277 n n C5 C6 NAG sing 278 n n C5 O5 NAG sing 279 n n C5 H5 NAG sing 280 n n C6 O6 NAG sing 281 n n C6 H61 NAG sing 282 n n C6 H62 NAG sing 283 n n C7 C8 NAG sing 284 n n C7 N2 NAG sing 285 n n C7 O7 NAG doub 286 n n C8 H81 NAG sing 287 n n C8 H82 NAG sing 288 n n C8 H83 NAG sing 289 n n N2 HN2 NAG sing 290 n n O1 HO1 NAG sing 291 n n O3 HO3 NAG sing 292 n n O4 HO4 NAG sing 293 n n O6 HO6 NAG sing 294 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6HCE _atom_sites.fract_transf_matrix[1][1] 0.00909 _atom_sites.fract_transf_matrix[1][2] 0.005248 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010497 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013961 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 301 1 NAG NAG . C 2 NAG A 1 302 4 NAG NAG . D 3 GOL A 1 303 2 GOL GOL . E 3 GOL A 1 304 3 GOL GOL . F 3 GOL A 1 305 7 GOL GOL . G 3 GOL A 1 306 9 GOL GOL . H 3 GOL A 1 307 10 GOL GOL . I 4 SO4 A 1 308 4 SO4 SO4 . J 4 SO4 A 1 309 6 SO4 SO4 . K 4 SO4 A 1 310 7 SO4 SO4 . L 5 ACT A 1 311 3 ACT ACT . M 5 ACT A 1 312 4 ACT ACT . N 5 ACT A 1 313 5 ACT ACT . O 6 CL A 1 314 3 CL CL . P 6 CL A 1 315 4 CL CL . Q 7 EDO A 1 316 2 EDO EDO . R 8 HOH A 1 401 122 HOH HOH . R 8 HOH A 2 402 68 HOH HOH . R 8 HOH A 3 403 5 HOH HOH . R 8 HOH A 4 404 124 HOH HOH . R 8 HOH A 5 405 114 HOH HOH . R 8 HOH A 6 406 97 HOH HOH . R 8 HOH A 7 407 21 HOH HOH . R 8 HOH A 8 408 53 HOH HOH . R 8 HOH A 9 409 113 HOH HOH . R 8 HOH A 10 410 31 HOH HOH . R 8 HOH A 11 411 59 HOH HOH . R 8 HOH A 12 412 73 HOH HOH . R 8 HOH A 13 413 122 HOH HOH . R 8 HOH A 14 414 6 HOH HOH . R 8 HOH A 15 415 91 HOH HOH . R 8 HOH A 16 416 29 HOH HOH . R 8 HOH A 17 417 104 HOH HOH . R 8 HOH A 18 418 99 HOH HOH . R 8 HOH A 19 419 127 HOH HOH . R 8 HOH A 20 420 45 HOH HOH . R 8 HOH A 21 421 83 HOH HOH . R 8 HOH A 22 422 103 HOH HOH . R 8 HOH A 23 423 65 HOH HOH . R 8 HOH A 24 424 36 HOH HOH . R 8 HOH A 25 425 43 HOH HOH . R 8 HOH A 26 426 84 HOH HOH . R 8 HOH A 27 427 14 HOH HOH . R 8 HOH A 28 428 82 HOH HOH . R 8 HOH A 29 429 103 HOH HOH . R 8 HOH A 30 430 107 HOH HOH . R 8 HOH A 31 431 66 HOH HOH . R 8 HOH A 32 432 87 HOH HOH . R 8 HOH A 33 433 118 HOH HOH . R 8 HOH A 34 434 115 HOH HOH . R 8 HOH A 35 435 52 HOH HOH . R 8 HOH A 36 436 64 HOH HOH . R 8 HOH A 37 437 92 HOH HOH . R 8 HOH A 38 438 1 HOH HOH . R 8 HOH A 39 439 9 HOH HOH . R 8 HOH A 40 440 125 HOH HOH . R 8 HOH A 41 441 102 HOH HOH . R 8 HOH A 42 442 93 HOH HOH . R 8 HOH A 43 443 39 HOH HOH . R 8 HOH A 44 444 12 HOH HOH . R 8 HOH A 45 445 119 HOH HOH . R 8 HOH A 46 446 44 HOH HOH . R 8 HOH A 47 447 10 HOH HOH . R 8 HOH A 48 448 42 HOH HOH . R 8 HOH A 49 449 147 HOH HOH . R 8 HOH A 50 450 26 HOH HOH . R 8 HOH A 51 451 1 HOH HOH . R 8 HOH A 52 452 70 HOH HOH . R 8 HOH A 53 453 151 HOH HOH . R 8 HOH A 54 454 127 HOH HOH . R 8 HOH A 55 455 23 HOH HOH . R 8 HOH A 56 456 13 HOH HOH . R 8 HOH A 57 457 89 HOH HOH . R 8 HOH A 58 458 3 HOH HOH . R 8 HOH A 59 459 30 HOH HOH . R 8 HOH A 60 460 120 HOH HOH . R 8 HOH A 61 461 60 HOH HOH . R 8 HOH A 62 462 41 HOH HOH . R 8 HOH A 63 463 62 HOH HOH . R 8 HOH A 64 464 7 HOH HOH . R 8 HOH A 65 465 62 HOH HOH . R 8 HOH A 66 466 138 HOH HOH . R 8 HOH A 67 467 98 HOH HOH . R 8 HOH A 68 468 150 HOH HOH . R 8 HOH A 69 469 24 HOH HOH . R 8 HOH A 70 470 67 HOH HOH . R 8 HOH A 71 471 136 HOH HOH . R 8 HOH A 72 472 15 HOH HOH . R 8 HOH A 73 473 2 HOH HOH . R 8 HOH A 74 474 101 HOH HOH . R 8 HOH A 75 475 50 HOH HOH . R 8 HOH A 76 476 18 HOH HOH . R 8 HOH A 77 477 94 HOH HOH . R 8 HOH A 78 478 12 HOH HOH . R 8 HOH A 79 479 92 HOH HOH . R 8 HOH A 80 480 80 HOH HOH . R 8 HOH A 81 481 41 HOH HOH . R 8 HOH A 82 482 121 HOH HOH . R 8 HOH A 83 483 109 HOH HOH . R 8 HOH A 84 484 106 HOH HOH . R 8 HOH A 85 485 3 HOH HOH . R 8 HOH A 86 486 106 HOH HOH . R 8 HOH A 87 487 56 HOH HOH . R 8 HOH A 88 488 101 HOH HOH . R 8 HOH A 89 489 28 HOH HOH . R 8 HOH A 90 490 148 HOH HOH . R 8 HOH A 91 491 135 HOH HOH . R 8 HOH A 92 492 54 HOH HOH . R 8 HOH A 93 493 49 HOH HOH . R 8 HOH A 94 494 17 HOH HOH . R 8 HOH A 95 495 77 HOH HOH . R 8 HOH A 96 496 128 HOH HOH . R 8 HOH A 97 497 43 HOH HOH . R 8 HOH A 98 498 113 HOH HOH . R 8 HOH A 99 499 132 HOH HOH . R 8 HOH A 100 500 13 HOH HOH . R 8 HOH A 101 501 112 HOH HOH . R 8 HOH A 102 502 109 HOH HOH . R 8 HOH A 103 503 38 HOH HOH . R 8 HOH A 104 504 91 HOH HOH . R 8 HOH A 105 505 97 HOH HOH . R 8 HOH A 106 506 63 HOH HOH . R 8 HOH A 107 507 111 HOH HOH . R 8 HOH A 108 508 25 HOH HOH . R 8 HOH A 109 509 112 HOH HOH . R 8 HOH A 110 510 40 HOH HOH . R 8 HOH A 111 511 149 HOH HOH . R 8 HOH A 112 512 61 HOH HOH . R 8 HOH A 113 513 7 HOH HOH . R 8 HOH A 114 514 126 HOH HOH . R 8 HOH A 115 515 71 HOH HOH . R 8 HOH A 116 516 98 HOH HOH . R 8 HOH A 117 517 6 HOH HOH . R 8 HOH A 118 518 99 HOH HOH . R 8 HOH A 119 519 16 HOH HOH . R 8 HOH A 120 520 128 HOH HOH . R 8 HOH A 121 521 133 HOH HOH . R 8 HOH A 122 522 34 HOH HOH . R 8 HOH A 123 523 129 HOH HOH . R 8 HOH A 124 524 76 HOH HOH . R 8 HOH A 125 525 134 HOH HOH . R 8 HOH A 126 526 126 HOH HOH . R 8 HOH A 127 527 125 HOH HOH . R 8 HOH A 128 528 119 HOH HOH . R 8 HOH A 129 529 94 HOH HOH . R 8 HOH A 130 530 116 HOH HOH . R 8 HOH A 131 531 100 HOH HOH . R 8 HOH A 132 532 78 HOH HOH . R 8 HOH A 133 533 105 HOH HOH . R 8 HOH A 134 534 51 HOH HOH . R 8 HOH A 135 535 83 HOH HOH . R 8 HOH A 136 536 117 HOH HOH . R 8 HOH A 137 537 85 HOH HOH . R 8 HOH A 138 538 110 HOH HOH . R 8 HOH A 139 539 85 HOH HOH . R 8 HOH A 140 540 121 HOH HOH . R 8 HOH A 141 541 117 HOH HOH . R 8 HOH A 142 542 81 HOH HOH . R 8 HOH A 143 543 146 HOH HOH . R 8 HOH A 144 544 104 HOH HOH . R 8 HOH A 145 545 86 HOH HOH . R 8 HOH A 146 546 115 HOH HOH . R 8 HOH A 147 547 120 HOH HOH . R 8 HOH A 148 548 114 HOH HOH . R 8 HOH A 149 549 102 HOH HOH . R 8 HOH A 150 550 95 HOH HOH . R 8 HOH A 151 551 88 HOH HOH . R 8 HOH A 152 552 100 HOH HOH . R 8 HOH A 153 553 90 HOH HOH . R 8 HOH A 154 554 108 HOH HOH . R 8 HOH A 155 555 55 HOH HOH . R 8 HOH A 156 556 74 HOH HOH . R 8 HOH A 157 557 144 HOH HOH . R 8 HOH A 158 558 130 HOH HOH . R 8 HOH A 159 559 110 HOH HOH . R 8 HOH A 160 560 86 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . B 2 95.834 59.396 53.865 1 44.32 ? C1 NAG 301 A 1 HETATM 2 C C2 NAG . . . B 2 95.205 58.933 55.174 1 53.68 ? C2 NAG 301 A 1 HETATM 3 C C3 NAG . . . B 2 94.633 60.112 55.952 1 47.94 ? C3 NAG 301 A 1 HETATM 4 C C4 NAG . . . B 2 95.653 61.24 56.062 1 55.41 ? C4 NAG 301 A 1 HETATM 5 C C5 NAG . . . B 2 96.255 61.565 54.7 1 63 ? C5 NAG 301 A 1 HETATM 6 C C6 NAG . . . B 2 97.33 62.639 54.821 1 61.81 ? C6 NAG 301 A 1 HETATM 7 C C7 NAG . . . B 2 93.097 58.272 54.171 1 82.53 ? C7 NAG 301 A 1 HETATM 8 C C8 NAG . . . B 2 92.114 57.16 53.95 1 70.17 ? C8 NAG 301 A 1 HETATM 9 N N2 NAG . . . B 2 94.161 57.963 54.906 1 50.48 ? N2 NAG 301 A 1 HETATM 10 O O3 NAG . . . B 2 94.256 59.68 57.265 1 65.44 ? O3 NAG 301 A 1 HETATM 11 O O4 NAG . . . B 2 95.017 62.408 56.594 1 58.29 ? O4 NAG 301 A 1 HETATM 12 O O5 NAG . . . B 2 96.825 60.385 54.138 1 42.02 ? O5 NAG 301 A 1 HETATM 13 O O6 NAG . . . B 2 98.464 62.105 55.513 1 42.56 ? O6 NAG 301 A 1 HETATM 14 O O7 NAG . . . B 2 92.93 59.388 53.707 1 42.72 ? O7 NAG 301 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #