data_6HCY
#
_model_server_result.job_id            58mOKt5demvRYFySZhegXA 
_model_server_result.datetime_utc      '2024-12-02 11:16:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6hcy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":502}' 
#
_entry.id    6HCY 
#
_exptl.entry_id    6HCY 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6HCY 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6HCY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    'P 1' 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 J N N 
? 3 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A ND2 ASN 323 C ASN 323 1_555 G C1 NAG . C NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
covale ? covale2 B ND2 ASN 323 A ASN 323 1_555 L C1 NAG . A NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
covale ? covale3 C ND2 ASN 323 B ASN 323 1_555 Q C1 NAG . B NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
metalc ? metalc1 A NE2 HIS 304 C HIS 304 1_555 E FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
metalc ? metalc2 A NE2 HIS 397 C HIS 397 1_555 E FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? 
metalc ? metalc3 B NE2 HIS 304 A HIS 304 1_555 J FE HEM . A HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
metalc ? metalc4 B NE2 HIS 397 A HIS 397 1_555 J FE HEM . A HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? 
metalc ? metalc5 C NE2 HIS 304 B HIS 304 1_555 O FE HEM . B HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
metalc ? metalc6 C NE2 HIS 397 B HIS 397 1_555 O FE HEM . B HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 272 n n 
CHA C4D HEM doub 273 n n 
CHA HHA HEM sing 274 n n 
CHB C4A HEM sing 275 n n 
CHB C1B HEM doub 276 n n 
CHB HHB HEM sing 277 n n 
CHC C4B HEM sing 278 n n 
CHC C1C HEM doub 279 n n 
CHC HHC HEM sing 280 n n 
CHD C4C HEM doub 281 n n 
CHD C1D HEM sing 282 n n 
CHD HHD HEM sing 283 n n 
C1A C2A HEM doub 284 n y 
C1A NA HEM sing 285 n y 
C2A C3A HEM sing 286 n y 
C2A CAA HEM sing 287 n n 
C3A C4A HEM doub 288 n y 
C3A CMA HEM sing 289 n n 
C4A NA HEM sing 290 n y 
CMA HMA HEM sing 291 n n 
CMA HMAA HEM sing 292 n n 
CMA HMAB HEM sing 293 n n 
CAA CBA HEM sing 294 n n 
CAA HAA HEM sing 295 n n 
CAA HAAA HEM sing 296 n n 
CBA CGA HEM sing 297 n n 
CBA HBA HEM sing 298 n n 
CBA HBAA HEM sing 299 n n 
CGA O1A HEM doub 300 n n 
CGA O2A HEM sing 301 n n 
C1B C2B HEM sing 302 n n 
C1B NB HEM sing 303 n n 
C2B C3B HEM doub 304 n n 
C2B CMB HEM sing 305 n n 
C3B C4B HEM sing 306 n n 
C3B CAB HEM sing 307 n n 
C4B NB HEM doub 308 n n 
CMB HMB HEM sing 309 n n 
CMB HMBA HEM sing 310 n n 
CMB HMBB HEM sing 311 n n 
CAB CBB HEM doub 312 n n 
CAB HAB HEM sing 313 n n 
CBB HBB HEM sing 314 n n 
CBB HBBA HEM sing 315 n n 
C1C C2C HEM sing 316 n y 
C1C NC HEM sing 317 n y 
C2C C3C HEM doub 318 n y 
C2C CMC HEM sing 319 n n 
C3C C4C HEM sing 320 n y 
C3C CAC HEM sing 321 n n 
C4C NC HEM sing 322 n y 
CMC HMC HEM sing 323 n n 
CMC HMCA HEM sing 324 n n 
CMC HMCB HEM sing 325 n n 
CAC CBC HEM doub 326 n n 
CAC HAC HEM sing 327 n n 
CBC HBC HEM sing 328 n n 
CBC HBCA HEM sing 329 n n 
C1D C2D HEM sing 330 n n 
C1D ND HEM doub 331 n n 
C2D C3D HEM doub 332 n n 
C2D CMD HEM sing 333 n n 
C3D C4D HEM sing 334 n n 
C3D CAD HEM sing 335 n n 
C4D ND HEM sing 336 n n 
CMD HMD HEM sing 337 n n 
CMD HMDA HEM sing 338 n n 
CMD HMDB HEM sing 339 n n 
CAD CBD HEM sing 340 n n 
CAD HAD HEM sing 341 n n 
CAD HADA HEM sing 342 n n 
CBD CGD HEM sing 343 n n 
CBD HBD HEM sing 344 n n 
CBD HBDA HEM sing 345 n n 
CGD O1D HEM doub 346 n n 
CGD O2D HEM sing 347 n n 
O2A H2A HEM sing 348 n n 
O2D H2D HEM sing 349 n n 
FE NA HEM sing 350 n n 
FE NB HEM sing 351 n n 
FE NC HEM sing 352 n n 
FE ND HEM sing 353 n n 
#
_atom_sites.entry_id                     6HCY 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 NAP C 1 501 1200 NAP NAP . 
E 3 HEM C 1 502 1202 HEM HEM . 
F 4 FAD C 1 503 1203 FAD FAD . 
G 5 NAG C 1 504 1204 NAG NAG . 
H 6 44E C 1 505 1205 44E 44E . 
I 2 NAP A 1 501 1200 NAP NAP . 
J 3 HEM A 1 502 1202 HEM HEM . 
K 4 FAD A 1 503 1203 FAD FAD . 
L 5 NAG A 1 504 1204 NAG NAG . 
M 6 44E A 1 505 1205 44E 44E . 
N 2 NAP B 1 501 1200 NAP NAP . 
O 3 HEM B 1 502 1202 HEM HEM . 
P 4 FAD B 1 503 1203 FAD FAD . 
Q 5 NAG B 1 504 1204 NAG NAG . 
R 6 44E B 1 505 1205 44E 44E . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . J 3 115.795 135.192 133.189 1 64.32 ? CHA HEM 502 A 1 
HETATM 2 C CHB HEM . . . J 3 115.561 130.408 132.806 1 64.32 ? CHB HEM 502 A 1 
HETATM 3 C CHC HEM . . . J 3 115.202 130.845 127.992 1 64.32 ? CHC HEM 502 A 1 
HETATM 4 C CHD HEM . . . J 3 114.609 135.615 128.529 1 64.32 ? CHD HEM 502 A 1 
HETATM 5 C C1A HEM . . . J 3 115.797 133.861 133.466 1 64.32 ? C1A HEM 502 A 1 
HETATM 6 C C2A HEM . . . J 3 116.027 133.318 134.726 1 64.32 ? C2A HEM 502 A 1 
HETATM 7 C C3A HEM . . . J 3 115.965 131.978 134.624 1 64.32 ? C3A HEM 502 A 1 
HETATM 8 C C4A HEM . . . J 3 115.685 131.672 133.298 1 64.32 ? C4A HEM 502 A 1 
HETATM 9 C CMA HEM . . . J 3 116.141 131.002 135.748 1 64.32 ? CMA HEM 502 A 1 
HETATM 10 C CAA HEM . . . J 3 116.314 134.069 135.981 1 64.32 ? CAA HEM 502 A 1 
HETATM 11 C CBA HEM . . . J 3 117.825 134.305 135.962 1 64.32 ? CBA HEM 502 A 1 
HETATM 12 C CGA HEM . . . J 3 118.343 134.499 137.351 1 64.32 ? CGA HEM 502 A 1 
HETATM 13 O O1A HEM . . . J 3 118.947 135.551 137.646 1 64.32 ? O1A HEM 502 A 1 
HETATM 14 O O2A HEM . . . J 3 118.174 133.606 138.207 1 64.32 ? O2A HEM 502 A 1 
HETATM 15 C C1B HEM . . . J 3 115.467 130.164 131.443 1 64.32 ? C1B HEM 502 A 1 
HETATM 16 C C2B HEM . . . J 3 115.485 128.847 130.958 1 64.32 ? C2B HEM 502 A 1 
HETATM 17 C C3B HEM . . . J 3 115.391 128.917 129.608 1 64.32 ? C3B HEM 502 A 1 
HETATM 18 C C4B HEM . . . J 3 115.308 130.356 129.293 1 64.32 ? C4B HEM 502 A 1 
HETATM 19 C CMB HEM . . . J 3 115.591 127.643 131.843 1 64.32 ? CMB HEM 502 A 1 
HETATM 20 C CAB HEM . . . J 3 115.343 127.821 128.625 1 64.32 ? CAB HEM 502 A 1 
HETATM 21 C CBB HEM . . . J 3 116.26 126.86 128.526 1 64.32 ? CBB HEM 502 A 1 
HETATM 22 C C1C HEM . . . J 3 114.958 132.184 127.714 1 64.32 ? C1C HEM 502 A 1 
HETATM 23 C C2C HEM . . . J 3 114.697 132.722 126.454 1 64.32 ? C2C HEM 502 A 1 
HETATM 24 C C3C HEM . . . J 3 114.527 134.074 126.612 1 64.32 ? C3C HEM 502 A 1 
HETATM 25 C C4C HEM . . . J 3 114.705 134.366 127.979 1 64.32 ? C4C HEM 502 A 1 
HETATM 26 C CMC HEM . . . J 3 114.608 131.933 125.183 1 64.32 ? CMC HEM 502 A 1 
HETATM 27 C CAC HEM . . . J 3 114.219 135.055 125.579 1 64.32 ? CAC HEM 502 A 1 
HETATM 28 C CBC HEM . . . J 3 115.189 135.508 124.812 1 64.32 ? CBC HEM 502 A 1 
HETATM 29 C C1D HEM . . . J 3 114.912 135.839 129.866 1 64.32 ? C1D HEM 502 A 1 
HETATM 30 C C2D HEM . . . J 3 114.953 137.191 130.403 1 64.32 ? C2D HEM 502 A 1 
HETATM 31 C C3D HEM . . . J 3 115.28 137.079 131.691 1 64.32 ? C3D HEM 502 A 1 
HETATM 32 C C4D HEM . . . J 3 115.439 135.656 131.944 1 64.32 ? C4D HEM 502 A 1 
HETATM 33 C CMD HEM . . . J 3 114.675 138.453 129.646 1 64.32 ? CMD HEM 502 A 1 
HETATM 34 C CAD HEM . . . J 3 115.448 138.182 132.688 1 64.32 ? CAD HEM 502 A 1 
HETATM 35 C CBD HEM . . . J 3 116.908 138.601 132.715 1 64.32 ? CBD HEM 502 A 1 
HETATM 36 C CGD HEM . . . J 3 117.238 139.199 134.047 1 64.32 ? CGD HEM 502 A 1 
HETATM 37 O O1D HEM . . . J 3 116.886 140.364 134.307 1 64.32 ? O1D HEM 502 A 1 
HETATM 38 O O2D HEM . . . J 3 117.858 138.53 134.892 1 64.32 ? O2D HEM 502 A 1 
HETATM 39 N NA HEM . . . J 3 115.639 132.831 132.591 1 64.32 ? NA HEM 502 A 1 
HETATM 40 N NB HEM . . . J 3 115.362 131.031 130.444 1 64.32 ? NB HEM 502 A 1 
HETATM 41 N NC HEM . . . J 3 115.005 133.2 128.619 1 64.32 ? NC HEM 502 A 1 
HETATM 42 N ND HEM . . . J 3 115.212 134.963 130.827 1 64.32 ? ND HEM 502 A 1 
HETATM 43 FE FE HEM . . . J 3 115.299 133.116 130.669 1 64.32 ? FE HEM 502 A 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    53 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           43 
#