data_6HCY # _model_server_result.job_id zDIXW7MT7ajwPzjTFpQnpw _model_server_result.datetime_utc '2024-11-04 22:32:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hcy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":504}' # _entry.id 6HCY # _exptl.entry_id 6HCY _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6HCY _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HCY _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 L N N ? 5 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 323 C ASN 323 1_555 G C1 NAG . C NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale2 B ND2 ASN 323 A ASN 323 1_555 L C1 NAG . A NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale3 C ND2 ASN 323 B ASN 323 1_555 Q C1 NAG . B NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? metalc ? metalc1 A NE2 HIS 304 C HIS 304 1_555 E FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc2 A NE2 HIS 397 C HIS 397 1_555 E FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc3 B NE2 HIS 304 A HIS 304 1_555 J FE HEM . A HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc4 B NE2 HIS 397 A HIS 397 1_555 J FE HEM . A HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc5 C NE2 HIS 304 B HIS 304 1_555 O FE HEM . B HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc6 C NE2 HIS 397 B HIS 397 1_555 O FE HEM . B HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 460 n n C1 O1 NAG sing 461 n n C1 O5 NAG sing 462 n n C1 H1 NAG sing 463 n n C2 C3 NAG sing 464 n n C2 N2 NAG sing 465 n n C2 H2 NAG sing 466 n n C3 C4 NAG sing 467 n n C3 O3 NAG sing 468 n n C3 H3 NAG sing 469 n n C4 C5 NAG sing 470 n n C4 O4 NAG sing 471 n n C4 H4 NAG sing 472 n n C5 C6 NAG sing 473 n n C5 O5 NAG sing 474 n n C5 H5 NAG sing 475 n n C6 O6 NAG sing 476 n n C6 H61 NAG sing 477 n n C6 H62 NAG sing 478 n n C7 C8 NAG sing 479 n n C7 N2 NAG sing 480 n n C7 O7 NAG doub 481 n n C8 H81 NAG sing 482 n n C8 H82 NAG sing 483 n n C8 H83 NAG sing 484 n n N2 HN2 NAG sing 485 n n O1 HO1 NAG sing 486 n n O3 HO3 NAG sing 487 n n O4 HO4 NAG sing 488 n n O6 HO6 NAG sing 489 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6HCY _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 NAP C 1 501 1200 NAP NAP . E 3 HEM C 1 502 1202 HEM HEM . F 4 FAD C 1 503 1203 FAD FAD . G 5 NAG C 1 504 1204 NAG NAG . H 6 44E C 1 505 1205 44E 44E . I 2 NAP A 1 501 1200 NAP NAP . J 3 HEM A 1 502 1202 HEM HEM . K 4 FAD A 1 503 1203 FAD FAD . L 5 NAG A 1 504 1204 NAG NAG . M 6 44E A 1 505 1205 44E 44E . N 2 NAP B 1 501 1200 NAP NAP . O 3 HEM B 1 502 1202 HEM HEM . P 4 FAD B 1 503 1203 FAD FAD . Q 5 NAG B 1 504 1204 NAG NAG . R 6 44E B 1 505 1205 44E 44E . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . G 5 109.587 119.09 155.953 1 102.26 ? C1 NAG 504 C 1 HETATM 2 C C2 NAG . . . G 5 109.137 120.144 156.984 1 102.26 ? C2 NAG 504 C 1 HETATM 3 C C3 NAG . . . G 5 108.007 119.598 157.856 1 102.26 ? C3 NAG 504 C 1 HETATM 4 C C4 NAG . . . G 5 106.877 119.039 157.002 1 102.26 ? C4 NAG 504 C 1 HETATM 5 C C5 NAG . . . G 5 107.435 117.997 156.04 1 102.26 ? C5 NAG 504 C 1 HETATM 6 C C6 NAG . . . G 5 106.401 117.452 155.086 1 102.26 ? C6 NAG 504 C 1 HETATM 7 C C7 NAG . . . G 5 110.628 121.837 157.998 1 102.26 ? C7 NAG 504 C 1 HETATM 8 C C8 NAG . . . G 5 109.824 122.879 157.276 1 102.26 ? C8 NAG 504 C 1 HETATM 9 N N2 NAG . . . G 5 110.255 120.563 157.816 1 102.26 ? N2 NAG 504 C 1 HETATM 10 O O3 NAG . . . G 5 107.513 120.641 158.687 1 102.26 ? O3 NAG 504 C 1 HETATM 11 O O4 NAG . . . G 5 105.889 118.442 157.834 1 102.26 ? O4 NAG 504 C 1 HETATM 12 O O5 NAG . . . G 5 108.451 118.601 155.232 1 102.26 ? O5 NAG 504 C 1 HETATM 13 O O6 NAG . . . G 5 106.935 117.333 153.774 1 102.26 ? O6 NAG 504 C 1 HETATM 14 O O7 NAG . . . G 5 111.582 122.134 158.708 1 102.26 ? O7 NAG 504 C 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #