data_6HCY # _model_server_result.job_id 9W-Bu4BUzNPOSRG9UzHMcg _model_server_result.datetime_utc '2024-12-02 11:20:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hcy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":505}' # _entry.id 6HCY # _exptl.entry_id 6HCY _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 368.36 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-3-(phosphonooxy)propane-1,2-diyl dihexanoate' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6HCY _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HCY _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 H N N ? 6 M N N ? 6 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 323 C ASN 323 1_555 G C1 NAG . C NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale2 B ND2 ASN 323 A ASN 323 1_555 L C1 NAG . A NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale3 C ND2 ASN 323 B ASN 323 1_555 Q C1 NAG . B NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? metalc ? metalc1 A NE2 HIS 304 C HIS 304 1_555 E FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc2 A NE2 HIS 397 C HIS 397 1_555 E FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc3 B NE2 HIS 304 A HIS 304 1_555 J FE HEM . A HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc4 B NE2 HIS 397 A HIS 397 1_555 J FE HEM . A HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc5 C NE2 HIS 304 B HIS 304 1_555 O FE HEM . B HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc6 C NE2 HIS 397 B HIS 397 1_555 O FE HEM . B HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? # _chem_comp.formula 'C15 H29 O8 P' _chem_comp.formula_weight 368.36 _chem_comp.id 44E _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-3-(phosphonooxy)propane-1,2-diyl dihexanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O22 C21 44E doub 1 n n O12 P 44E doub 2 n n C1 C2 44E sing 3 n n C1 O11 44E sing 4 n n C2 C3 44E sing 5 n n C2 O21 44E sing 6 n n C23 C22 44E sing 7 n n C21 O21 44E sing 8 n n C21 C22 44E sing 9 n n C3 O31 44E sing 10 n n O11 P 44E sing 11 n n P O14 44E sing 12 n n P O13 44E sing 13 n n C32 C33 44E sing 14 n n C32 C31 44E sing 15 n n O31 C31 44E sing 16 n n C33 C34 44E sing 17 n n C31 O32 44E doub 18 n n C34 C35 44E sing 19 n n C36 C35 44E sing 20 n n O13 H1 44E sing 21 n n O14 H2 44E sing 22 n n C1 H3 44E sing 23 n n C1 H4 44E sing 24 n n C2 H5 44E sing 25 n n C22 H6 44E sing 26 n n C22 H7 44E sing 27 n n C23 H8 44E sing 28 n n C23 H9 44E sing 29 n n C3 H11 44E sing 30 n n C3 H12 44E sing 31 n n C32 H13 44E sing 32 n n C32 H14 44E sing 33 n n C33 H15 44E sing 34 n n C33 H16 44E sing 35 n n C34 H17 44E sing 36 n n C34 H18 44E sing 37 n n C35 H19 44E sing 38 n n C35 H20 44E sing 39 n n C36 H21 44E sing 40 n n C36 H22 44E sing 41 n n C36 H23 44E sing 42 n n C23 C4 44E sing 43 n n C4 C5 44E sing 44 n n C5 C6 44E sing 45 n n C4 H10 44E sing 46 n n C4 H24 44E sing 47 n n C5 H25 44E sing 48 n n C5 H26 44E sing 49 n n C6 H27 44E sing 50 n n C6 H28 44E sing 51 n n C6 H29 44E sing 52 n n # _atom_sites.entry_id 6HCY _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 NAP C 1 501 1200 NAP NAP . E 3 HEM C 1 502 1202 HEM HEM . F 4 FAD C 1 503 1203 FAD FAD . G 5 NAG C 1 504 1204 NAG NAG . H 6 44E C 1 505 1205 44E 44E . I 2 NAP A 1 501 1200 NAP NAP . J 3 HEM A 1 502 1202 HEM HEM . K 4 FAD A 1 503 1203 FAD FAD . L 5 NAG A 1 504 1204 NAG NAG . M 6 44E A 1 505 1205 44E 44E . N 2 NAP B 1 501 1200 NAP NAP . O 3 HEM B 1 502 1202 HEM HEM . P 4 FAD B 1 503 1203 FAD FAD . Q 5 NAG B 1 504 1204 NAG NAG . R 6 44E B 1 505 1205 44E 44E . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O13 44E . . . H 6 109.887 117.252 102.7 1 85.86 ? O13 44E 505 C 1 HETATM 2 P P 44E . . . H 6 109.957 117 104.183 1 85.86 ? P 44E 505 C 1 HETATM 3 O O14 44E . . . H 6 108.628 116.482 104.664 1 85.86 ? O14 44E 505 C 1 HETATM 4 O O12 44E . . . H 6 111.031 115.984 104.456 1 85.86 ? O12 44E 505 C 1 HETATM 5 O O11 44E . . . H 6 110.322 118.394 104.976 1 85.86 ? O11 44E 505 C 1 HETATM 6 C C1 44E . . . H 6 111.219 118.339 106.046 1 85.86 ? C1 44E 505 C 1 HETATM 7 C C2 44E . . . H 6 111.998 119.651 106.099 1 85.86 ? C2 44E 505 C 1 HETATM 8 O O21 44E . . . H 6 113.36 119.513 106.442 1 85.86 ? O21 44E 505 C 1 HETATM 9 C C21 44E . . . H 6 113.833 118.449 107.225 1 85.86 ? C21 44E 505 C 1 HETATM 10 O O22 44E . . . H 6 114.24 117.464 106.716 1 85.86 ? O22 44E 505 C 1 HETATM 11 C C22 44E . . . H 6 113.882 118.563 108.744 1 85.86 ? C22 44E 505 C 1 HETATM 12 C C23 44E . . . H 6 115.313 118.347 109.226 1 85.86 ? C23 44E 505 C 1 HETATM 13 C C3 44E . . . H 6 111.307 120.639 107.043 1 85.86 ? C3 44E 505 C 1 HETATM 14 O O31 44E . . . H 6 110.927 120.008 108.227 1 85.86 ? O31 44E 505 C 1 HETATM 15 C C31 44E . . . H 6 110.905 120.84 109.35 1 85.86 ? C31 44E 505 C 1 HETATM 16 O O32 44E . . . H 6 111.851 120.91 110.056 1 85.86 ? O32 44E 505 C 1 HETATM 17 C C32 44E . . . H 6 109.661 121.649 109.682 1 85.86 ? C32 44E 505 C 1 HETATM 18 C C33 44E . . . H 6 109.163 121.244 111.067 1 85.86 ? C33 44E 505 C 1 HETATM 19 C C34 44E . . . H 6 107.817 121.904 111.35 1 85.86 ? C34 44E 505 C 1 HETATM 20 C C35 44E . . . H 6 107.169 121.273 112.578 1 85.86 ? C35 44E 505 C 1 HETATM 21 C C36 44E . . . H 6 106.033 122.17 113.062 1 85.86 ? C36 44E 505 C 1 HETATM 22 C C4 44E . . . H 6 115.463 118.831 110.667 1 85.86 ? C4 44E 505 C 1 HETATM 23 C C5 44E . . . H 6 116.63 118.094 111.317 1 85.86 ? C5 44E 505 C 1 HETATM 24 C C6 44E . . . H 6 117.062 118.75 112.625 1 85.86 ? C6 44E 505 C 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 24 #