data_6HD1
#
_model_server_result.job_id            C4UMMtx4fM0JKEm_uVBQWg 
_model_server_result.datetime_utc      '2024-11-30 10:35:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6hd1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":503}' 
#
_entry.id    6HD1 
#
_exptl.entry_id    6HD1 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6HD1 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6HD1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    'P 1' 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 K N N 
? 4 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A ND2 ASN 323 C ASN 323 1_555 G C1 NAG . C NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
covale ? covale2 B ND2 ASN 323 A ASN 323 1_555 L C1 NAG . A NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale3 C ND2 ASN 323 B ASN 323 1_555 Q C1 NAG . B NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
metalc ? metalc1 A NE2 HIS 304 C HIS 304 1_555 E FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? 
metalc ? metalc2 A NE2 HIS 397 C HIS 397 1_555 E FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? 
metalc ? metalc3 B NE2 HIS 304 A HIS 304 1_555 J FE HEM . A HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? 
metalc ? metalc4 B NE2 HIS 397 A HIS 397 1_555 J FE HEM . A HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? 
metalc ? metalc5 C NE2 HIS 304 B HIS 304 1_555 O FE HEM . B HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? 
metalc ? metalc6 C NE2 HIS 397 B HIS 397 1_555 O FE HEM . B HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 135 n n 
PA O2A FAD sing 136 n n 
PA O5B FAD sing 137 n n 
PA O3P FAD sing 138 n n 
O2A HOA2 FAD sing 139 n n 
O5B C5B FAD sing 140 n n 
C5B C4B FAD sing 141 n n 
C5B H51A FAD sing 142 n n 
C5B H52A FAD sing 143 n n 
C4B O4B FAD sing 144 n n 
C4B C3B FAD sing 145 n n 
C4B H4B FAD sing 146 n n 
O4B C1B FAD sing 147 n n 
C3B O3B FAD sing 148 n n 
C3B C2B FAD sing 149 n n 
C3B H3B FAD sing 150 n n 
O3B HO3A FAD sing 151 n n 
C2B O2B FAD sing 152 n n 
C2B C1B FAD sing 153 n n 
C2B H2B FAD sing 154 n n 
O2B HO2A FAD sing 155 n n 
C1B N9A FAD sing 156 n n 
C1B H1B FAD sing 157 n n 
N9A C8A FAD sing 158 n y 
N9A C4A FAD sing 159 n y 
C8A N7A FAD doub 160 n y 
C8A H8A FAD sing 161 n n 
N7A C5A FAD sing 162 n y 
C5A C6A FAD sing 163 n y 
C5A C4A FAD doub 164 n y 
C6A N6A FAD sing 165 n n 
C6A N1A FAD doub 166 n y 
N6A H61A FAD sing 167 n n 
N6A H62A FAD sing 168 n n 
N1A C2A FAD sing 169 n y 
C2A N3A FAD doub 170 n y 
C2A H2A FAD sing 171 n n 
N3A C4A FAD sing 172 n y 
N1 C2 FAD sing 173 n n 
N1 C10 FAD doub 174 n n 
C2 O2 FAD doub 175 n n 
C2 N3 FAD sing 176 n n 
N3 C4 FAD sing 177 n n 
N3 HN3 FAD sing 178 n n 
C4 O4 FAD doub 179 n n 
C4 C4X FAD sing 180 n n 
C4X N5 FAD doub 181 n n 
C4X C10 FAD sing 182 n n 
N5 C5X FAD sing 183 n n 
C5X C6 FAD doub 184 n y 
C5X C9A FAD sing 185 n y 
C6 C7 FAD sing 186 n y 
C6 H6 FAD sing 187 n n 
C7 C7M FAD sing 188 n n 
C7 C8 FAD doub 189 n y 
C7M HM71 FAD sing 190 n n 
C7M HM72 FAD sing 191 n n 
C7M HM73 FAD sing 192 n n 
C8 C8M FAD sing 193 n n 
C8 C9 FAD sing 194 n y 
C8M HM81 FAD sing 195 n n 
C8M HM82 FAD sing 196 n n 
C8M HM83 FAD sing 197 n n 
C9 C9A FAD doub 198 n y 
C9 H9 FAD sing 199 n n 
C9A N10 FAD sing 200 n n 
N10 C10 FAD sing 201 n n 
N10 C1' FAD sing 202 n n 
C1' C2' FAD sing 203 n n 
C1' "H1'1" FAD sing 204 n n 
C1' "H1'2" FAD sing 205 n n 
C2' O2' FAD sing 206 n n 
C2' C3' FAD sing 207 n n 
C2' H2' FAD sing 208 n n 
O2' HO2' FAD sing 209 n n 
C3' O3' FAD sing 210 n n 
C3' C4' FAD sing 211 n n 
C3' H3' FAD sing 212 n n 
O3' HO3' FAD sing 213 n n 
C4' O4' FAD sing 214 n n 
C4' C5' FAD sing 215 n n 
C4' H4' FAD sing 216 n n 
O4' HO4' FAD sing 217 n n 
C5' O5' FAD sing 218 n n 
C5' "H5'1" FAD sing 219 n n 
C5' "H5'2" FAD sing 220 n n 
O5' P FAD sing 221 n n 
P O1P FAD doub 222 n n 
P O2P FAD sing 223 n n 
P O3P FAD sing 224 n n 
O2P HOP2 FAD sing 225 n n 
#
_atom_sites.entry_id                     6HD1 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 NAP C 1 501 1200 NAP NAP . 
E 3 HEM C 1 502 1202 HEM HEM . 
F 4 FAD C 1 503 1203 FAD FAD . 
G 5 NAG C 1 504 1204 NAG NAG . 
H 6 44E C 1 505 1205 44E 44E . 
I 2 NAP A 1 501 1200 NAP NAP . 
J 3 HEM A 1 502 1202 HEM HEM . 
K 4 FAD A 1 503 1203 FAD FAD . 
L 5 NAG A 1 504 1204 NAG NAG . 
M 6 44E A 1 505 1205 44E 44E . 
N 2 NAP B 1 501 1200 NAP NAP . 
O 3 HEM B 1 502 1202 HEM HEM . 
P 4 FAD B 1 503 1203 FAD FAD . 
Q 5 NAG B 1 504 1204 NAG NAG . 
R 6 44E B 1 505 1205 44E 44E . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . F 4 116.222 100.868 108.876 1 91.33 ? PA FAD 503 C 1 
HETATM 2 O O1A FAD . . . F 4 117.279 100.293 108.019 1 91.33 ? O1A FAD 503 C 1 
HETATM 3 O O2A FAD . . . F 4 115.483 102.054 108.282 1 91.33 ? O2A FAD 503 C 1 
HETATM 4 O O5B FAD . . . F 4 115.181 99.829 109.297 1 91.33 ? O5B FAD 503 C 1 
HETATM 5 C C5B FAD . . . F 4 115.531 98.44 109.439 1 91.33 ? C5B FAD 503 C 1 
HETATM 6 C C4B FAD . . . F 4 114.649 97.641 108.524 1 91.33 ? C4B FAD 503 C 1 
HETATM 7 O O4B FAD . . . F 4 114.554 98.293 107.241 1 91.33 ? O4B FAD 503 C 1 
HETATM 8 C C3B FAD . . . F 4 115.159 96.246 108.208 1 91.33 ? C3B FAD 503 C 1 
HETATM 9 O O3B FAD . . . F 4 114.77 95.34 109.23 1 91.33 ? O3B FAD 503 C 1 
HETATM 10 C C2B FAD . . . F 4 114.452 95.954 106.89 1 91.33 ? C2B FAD 503 C 1 
HETATM 11 O O2B FAD . . . F 4 113.099 95.572 107.095 1 91.33 ? O2B FAD 503 C 1 
HETATM 12 C C1B FAD . . . F 4 114.535 97.32 106.209 1 91.33 ? C1B FAD 503 C 1 
HETATM 13 N N9A FAD . . . F 4 115.74 97.478 105.413 1 91.33 ? N9A FAD 503 C 1 
HETATM 14 C C8A FAD . . . F 4 116.791 98.316 105.662 1 91.33 ? C8A FAD 503 C 1 
HETATM 15 N N7A FAD . . . F 4 117.758 98.234 104.782 1 91.33 ? N7A FAD 503 C 1 
HETATM 16 C C5A FAD . . . F 4 117.313 97.265 103.898 1 91.33 ? C5A FAD 503 C 1 
HETATM 17 C C6A FAD . . . F 4 117.877 96.711 102.735 1 91.33 ? C6A FAD 503 C 1 
HETATM 18 N N6A FAD . . . F 4 119.064 97.071 102.241 1 91.33 ? N6A FAD 503 C 1 
HETATM 19 N N1A FAD . . . F 4 117.168 95.765 102.082 1 91.33 ? N1A FAD 503 C 1 
HETATM 20 C C2A FAD . . . F 4 115.979 95.405 102.566 1 91.33 ? C2A FAD 503 C 1 
HETATM 21 N N3A FAD . . . F 4 115.348 95.856 103.65 1 91.33 ? N3A FAD 503 C 1 
HETATM 22 C C4A FAD . . . F 4 116.072 96.789 104.276 1 91.33 ? C4A FAD 503 C 1 
HETATM 23 N N1 FAD . . . F 4 115.326 109.108 110.104 1 91.33 ? N1 FAD 503 C 1 
HETATM 24 C C2 FAD . . . F 4 115.538 109.573 108.844 1 91.33 ? C2 FAD 503 C 1 
HETATM 25 O O2 FAD . . . F 4 115.224 108.917 107.849 1 91.33 ? O2 FAD 503 C 1 
HETATM 26 N N3 FAD . . . F 4 116.113 110.803 108.661 1 91.33 ? N3 FAD 503 C 1 
HETATM 27 C C4 FAD . . . F 4 116.522 111.651 109.641 1 91.33 ? C4 FAD 503 C 1 
HETATM 28 O O4 FAD . . . F 4 117.026 112.732 109.351 1 91.33 ? O4 FAD 503 C 1 
HETATM 29 C C4X FAD . . . F 4 116.293 111.158 110.972 1 91.33 ? C4X FAD 503 C 1 
HETATM 30 N N5 FAD . . . F 4 116.646 111.895 111.946 1 91.33 ? N5 FAD 503 C 1 
HETATM 31 C C5X FAD . . . F 4 116.434 111.438 113.215 1 91.33 ? C5X FAD 503 C 1 
HETATM 32 C C6 FAD . . . F 4 116.819 112.236 114.282 1 91.33 ? C6 FAD 503 C 1 
HETATM 33 C C7 FAD . . . F 4 116.626 111.819 115.591 1 91.33 ? C7 FAD 503 C 1 
HETATM 34 C C7M FAD . . . F 4 117.044 112.716 116.723 1 91.33 ? C7M FAD 503 C 1 
HETATM 35 C C8 FAD . . . F 4 116.041 110.571 115.84 1 91.33 ? C8 FAD 503 C 1 
HETATM 36 C C8M FAD . . . F 4 115.826 110.086 117.246 1 91.33 ? C8M FAD 503 C 1 
HETATM 37 C C9 FAD . . . F 4 115.657 109.769 114.774 1 91.33 ? C9 FAD 503 C 1 
HETATM 38 C C9A FAD . . . F 4 115.853 110.193 113.467 1 91.33 ? C9A FAD 503 C 1 
HETATM 39 N N10 FAD . . . F 4 115.488 109.409 112.361 1 91.33 ? N10 FAD 503 C 1 
HETATM 40 C C10 FAD . . . F 4 115.688 109.865 111.1 1 91.33 ? C10 FAD 503 C 1 
HETATM 41 C C1' FAD . . . F 4 114.855 108.102 112.541 1 91.33 ? C1' FAD 503 C 1 
HETATM 42 C C2' FAD . . . F 4 115.851 106.958 112.624 1 91.33 ? C2' FAD 503 C 1 
HETATM 43 O O2' FAD . . . F 4 117.174 107.482 112.54 1 91.33 ? O2' FAD 503 C 1 
HETATM 44 C C3' FAD . . . F 4 115.61 106.007 111.456 1 91.33 ? C3' FAD 503 C 1 
HETATM 45 O O3' FAD . . . F 4 114.917 104.863 111.936 1 91.33 ? O3' FAD 503 C 1 
HETATM 46 C C4' FAD . . . F 4 116.888 105.57 110.747 1 91.33 ? C4' FAD 503 C 1 
HETATM 47 O O4' FAD . . . F 4 117.006 106.333 109.546 1 91.33 ? O4' FAD 503 C 1 
HETATM 48 C C5' FAD . . . F 4 116.934 104.091 110.427 1 91.33 ? C5' FAD 503 C 1 
HETATM 49 O O5' FAD . . . F 4 116.56 103.333 111.597 1 91.33 ? O5' FAD 503 C 1 
HETATM 50 P P FAD . . . F 4 116.009 101.866 111.468 1 91.33 ? P FAD 503 C 1 
HETATM 51 O O1P FAD . . . F 4 116.354 101.011 112.688 1 91.33 ? O1P FAD 503 C 1 
HETATM 52 O O2P FAD . . . F 4 114.604 101.91 111.128 1 91.33 ? O2P FAD 503 C 1 
HETATM 53 O O3P FAD . . . F 4 116.838 101.316 110.262 1 91.33 ? O3P FAD 503 C 1 
#
_model_server_stats.io_time_ms              76 
_model_server_stats.parse_time_ms           32 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           326 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           53 
#