data_6HD8 # _model_server_result.job_id y9DUovB2XWe8QyEVnxZOig _model_server_result.datetime_utc '2025-07-03 03:02:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hd8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":503}' # _entry.id 6HD8 # _exptl.entry_id 6HD8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 39.098 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'POTASSIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6HD8 _cell.length_a 131.21 _cell.length_b 131.21 _cell.length_c 132.59 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HD8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 1 2 A,B,C,D,E,F,G,H 1 3 A,B,C,D,E,F,G,H 1 4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -131.21 0 3 'crystal symmetry operation' 3_445 -y-1/2,x-1/2,z 0 -1 0 1 0 0 0 0 1 -65.605 -65.605 0 4 'crystal symmetry operation' 4_545 y+1/2,-x-1/2,z 0 1 0 -1 0 0 0 0 1 65.605 -65.605 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C GLC 1 C 1 GLC A 501 MAL 3 n C GLC 2 C 2 GLC A 501 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 25 A CYS 25 1_555 A SG CYS 98 A CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? covale ? covale1 C O4 GLC . C GLC 1 1_555 C C1 GLC . C GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.393 sing metalc ? metalc1 E K K . B K 502 1_555 H O HOH . B HOH 638 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.394 ? metalc ? metalc2 E K K . B K 502 1_555 H O HOH . B HOH 638 3_445 ? ? ? ? ? ? ? ? ? ? ? ? 3.394 ? # _chem_comp.formula 'K 1' _chem_comp.formula_weight 39.098 _chem_comp.id K _chem_comp.mon_nstd_flag . _chem_comp.name 'POTASSIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6HD8 _atom_sites.fract_transf_matrix[1][1] 0.007621 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007621 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007542 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 LMT B 1 501 501 LMT LMT . E 5 K B 1 502 1 K K . F 5 K B 1 503 2 K K . G 6 HOH A 1 601 47 HOH HOH . G 6 HOH A 2 602 136 HOH HOH . G 6 HOH A 3 603 128 HOH HOH . G 6 HOH A 4 604 158 HOH HOH . G 6 HOH A 5 605 129 HOH HOH . G 6 HOH A 6 606 48 HOH HOH . G 6 HOH A 7 607 135 HOH HOH . G 6 HOH A 8 608 3 HOH HOH . G 6 HOH A 9 609 152 HOH HOH . G 6 HOH A 10 610 112 HOH HOH . G 6 HOH A 11 611 120 HOH HOH . G 6 HOH A 12 612 41 HOH HOH . G 6 HOH A 13 613 33 HOH HOH . G 6 HOH A 14 614 65 HOH HOH . G 6 HOH A 15 615 148 HOH HOH . G 6 HOH A 16 616 75 HOH HOH . G 6 HOH A 17 617 72 HOH HOH . G 6 HOH A 18 618 163 HOH HOH . G 6 HOH A 19 619 121 HOH HOH . G 6 HOH A 20 620 155 HOH HOH . G 6 HOH A 21 621 168 HOH HOH . G 6 HOH A 22 622 161 HOH HOH . G 6 HOH A 23 623 45 HOH HOH . G 6 HOH A 24 624 9 HOH HOH . G 6 HOH A 25 625 29 HOH HOH . G 6 HOH A 26 626 14 HOH HOH . G 6 HOH A 27 627 83 HOH HOH . G 6 HOH A 28 628 170 HOH HOH . G 6 HOH A 29 629 40 HOH HOH . G 6 HOH A 30 630 96 HOH HOH . G 6 HOH A 31 631 26 HOH HOH . G 6 HOH A 32 632 149 HOH HOH . G 6 HOH A 33 633 104 HOH HOH . G 6 HOH A 34 634 154 HOH HOH . G 6 HOH A 35 635 27 HOH HOH . G 6 HOH A 36 636 177 HOH HOH . G 6 HOH A 37 637 63 HOH HOH . G 6 HOH A 38 638 144 HOH HOH . G 6 HOH A 39 639 139 HOH HOH . G 6 HOH A 40 640 159 HOH HOH . G 6 HOH A 41 641 157 HOH HOH . G 6 HOH A 42 642 107 HOH HOH . G 6 HOH A 43 643 71 HOH HOH . G 6 HOH A 44 644 51 HOH HOH . G 6 HOH A 45 645 12 HOH HOH . G 6 HOH A 46 646 6 HOH HOH . G 6 HOH A 47 647 52 HOH HOH . G 6 HOH A 48 648 160 HOH HOH . G 6 HOH A 49 649 108 HOH HOH . G 6 HOH A 50 650 137 HOH HOH . G 6 HOH A 51 651 101 HOH HOH . G 6 HOH A 52 652 145 HOH HOH . G 6 HOH A 53 653 76 HOH HOH . G 6 HOH A 54 654 142 HOH HOH . G 6 HOH A 55 655 21 HOH HOH . G 6 HOH A 56 656 10 HOH HOH . G 6 HOH A 57 657 82 HOH HOH . G 6 HOH A 58 658 174 HOH HOH . G 6 HOH A 59 659 19 HOH HOH . G 6 HOH A 60 660 100 HOH HOH . G 6 HOH A 61 661 67 HOH HOH . G 6 HOH A 62 662 117 HOH HOH . G 6 HOH A 63 663 166 HOH HOH . G 6 HOH A 64 664 25 HOH HOH . G 6 HOH A 65 665 5 HOH HOH . G 6 HOH A 66 666 24 HOH HOH . G 6 HOH A 67 667 143 HOH HOH . G 6 HOH A 68 668 94 HOH HOH . G 6 HOH A 69 669 78 HOH HOH . G 6 HOH A 70 670 125 HOH HOH . G 6 HOH A 71 671 116 HOH HOH . G 6 HOH A 72 672 42 HOH HOH . G 6 HOH A 73 673 97 HOH HOH . G 6 HOH A 74 674 88 HOH HOH . G 6 HOH A 75 675 169 HOH HOH . G 6 HOH A 76 676 164 HOH HOH . G 6 HOH A 77 677 146 HOH HOH . G 6 HOH A 78 678 30 HOH HOH . G 6 HOH A 79 679 175 HOH HOH . G 6 HOH A 80 680 85 HOH HOH . G 6 HOH A 81 681 176 HOH HOH . G 6 HOH A 82 682 13 HOH HOH . G 6 HOH A 83 683 18 HOH HOH . G 6 HOH A 84 684 84 HOH HOH . H 6 HOH B 1 601 89 HOH HOH . H 6 HOH B 2 602 34 HOH HOH . H 6 HOH B 3 603 131 HOH HOH . H 6 HOH B 4 604 130 HOH HOH . H 6 HOH B 5 605 172 HOH HOH . H 6 HOH B 6 606 132 HOH HOH . H 6 HOH B 7 607 64 HOH HOH . H 6 HOH B 8 608 60 HOH HOH . H 6 HOH B 9 609 115 HOH HOH . H 6 HOH B 10 610 126 HOH HOH . H 6 HOH B 11 611 134 HOH HOH . H 6 HOH B 12 612 133 HOH HOH . H 6 HOH B 13 613 58 HOH HOH . H 6 HOH B 14 614 1 HOH HOH . H 6 HOH B 15 615 8 HOH HOH . H 6 HOH B 16 616 173 HOH HOH . H 6 HOH B 17 617 123 HOH HOH . H 6 HOH B 18 618 70 HOH HOH . H 6 HOH B 19 619 17 HOH HOH . H 6 HOH B 20 620 122 HOH HOH . H 6 HOH B 21 621 140 HOH HOH . H 6 HOH B 22 622 4 HOH HOH . H 6 HOH B 23 623 74 HOH HOH . H 6 HOH B 24 624 156 HOH HOH . H 6 HOH B 25 625 151 HOH HOH . H 6 HOH B 26 626 113 HOH HOH . H 6 HOH B 27 627 118 HOH HOH . H 6 HOH B 28 628 147 HOH HOH . H 6 HOH B 29 629 165 HOH HOH . H 6 HOH B 30 630 93 HOH HOH . H 6 HOH B 31 631 103 HOH HOH . H 6 HOH B 32 632 87 HOH HOH . H 6 HOH B 33 633 162 HOH HOH . H 6 HOH B 34 634 111 HOH HOH . H 6 HOH B 35 635 7 HOH HOH . H 6 HOH B 36 636 62 HOH HOH . H 6 HOH B 37 637 110 HOH HOH . H 6 HOH B 38 638 46 HOH HOH . H 6 HOH B 39 639 124 HOH HOH . H 6 HOH B 40 640 119 HOH HOH . H 6 HOH B 41 641 61 HOH HOH . H 6 HOH B 42 642 16 HOH HOH . H 6 HOH B 43 643 141 HOH HOH . H 6 HOH B 44 644 95 HOH HOH . H 6 HOH B 45 645 114 HOH HOH . H 6 HOH B 46 646 171 HOH HOH . H 6 HOH B 47 647 54 HOH HOH . H 6 HOH B 48 648 138 HOH HOH . H 6 HOH B 49 649 80 HOH HOH . H 6 HOH B 50 650 43 HOH HOH . H 6 HOH B 51 651 91 HOH HOH . H 6 HOH B 52 652 167 HOH HOH . H 6 HOH B 53 653 92 HOH HOH . H 6 HOH B 54 654 39 HOH HOH . H 6 HOH B 55 655 150 HOH HOH . H 6 HOH B 56 656 31 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol K _atom_site.label_atom_id K _atom_site.label_comp_id K _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 5 _atom_site.Cartn_x 0 _atom_site.Cartn_y -65.605 _atom_site.Cartn_z 61.82 _atom_site.occupancy 0.14 _atom_site.B_iso_or_equiv 60.27 _atom_site.pdbx_formal_charge 1 _atom_site.auth_atom_id K _atom_site.auth_comp_id K _atom_site.auth_seq_id 503 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 88 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #