data_6HDE # _model_server_result.job_id bG3sRn44yQ5wn1fiOU9uLQ _model_server_result.datetime_utc '2024-11-29 08:38:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hde # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":202}' # _entry.id 6HDE # _exptl.entry_id 6HDE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6HDE _cell.length_a 63.2 _cell.length_b 66.5 _cell.length_c 95.3 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HDE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D O2A DUP . A DUP 201 1_555 F MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc2 D O2B DUP . A DUP 201 1_555 F MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc3 D O1G DUP . A DUP 201 1_555 F MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc4 E O2A DUP . A DUP 202 1_555 H MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc5 E O2B DUP . A DUP 202 1_555 H MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? metalc ? metalc6 E O1G DUP . A DUP 202 1_555 H MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc7 F MG MG . A MG 203 1_555 J O HOH . A HOH 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc8 F MG MG . A MG 203 1_555 J O HOH . A HOH 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc9 F MG MG . A MG 203 1_555 J O HOH . A HOH 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc10 J O HOH . A HOH 334 1_555 H MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc11 G O2A DUP . B DUP 201 1_555 I MG MG . C MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc12 G O2B DUP . B DUP 201 1_555 I MG MG . C MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? metalc ? metalc13 G O1G DUP . B DUP 201 1_555 I MG MG . C MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc14 H MG MG . B MG 202 1_555 K O HOH . B HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc15 H MG MG . B MG 202 1_555 K O HOH . B HOH 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc16 K O HOH . B HOH 341 1_555 I MG MG . C MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc17 I MG MG . C MG 201 1_555 L O HOH . C HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc18 I MG MG . C MG 201 1_555 L O HOH . C HOH 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6HDE _atom_sites.fract_transf_matrix[1][1] 0.015823 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015038 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010493 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 DUP A 1 201 777 DUP DUP . E 2 DUP A 1 202 777 DUP DUP . F 3 MG A 1 203 5 MG MG . G 2 DUP B 1 201 777 DUP DUP . H 3 MG B 1 202 3 MG MG . I 3 MG C 1 201 4 MG MG . J 4 HOH A 1 301 387 HOH HOH . J 4 HOH A 2 302 67 HOH HOH . J 4 HOH A 3 303 45 HOH HOH . J 4 HOH A 4 304 393 HOH HOH . J 4 HOH A 5 305 202 HOH HOH . J 4 HOH A 6 306 116 HOH HOH . J 4 HOH A 7 307 84 HOH HOH . J 4 HOH A 8 308 49 HOH HOH . J 4 HOH A 9 309 58 HOH HOH . J 4 HOH A 10 310 54 HOH HOH . J 4 HOH A 11 311 47 HOH HOH . J 4 HOH A 12 312 76 HOH HOH . J 4 HOH A 13 313 56 HOH HOH . J 4 HOH A 14 314 28 HOH HOH . J 4 HOH A 15 315 110 HOH HOH . J 4 HOH A 16 316 33 HOH HOH . J 4 HOH A 17 317 394 HOH HOH . J 4 HOH A 18 318 104 HOH HOH . J 4 HOH A 19 319 9 HOH HOH . J 4 HOH A 20 320 114 HOH HOH . J 4 HOH A 21 321 34 HOH HOH . J 4 HOH A 22 322 132 HOH HOH . J 4 HOH A 23 323 81 HOH HOH . J 4 HOH A 24 324 195 HOH HOH . J 4 HOH A 25 325 12 HOH HOH . J 4 HOH A 26 326 112 HOH HOH . J 4 HOH A 27 327 32 HOH HOH . J 4 HOH A 28 328 24 HOH HOH . J 4 HOH A 29 329 37 HOH HOH . J 4 HOH A 30 330 142 HOH HOH . J 4 HOH A 31 331 103 HOH HOH . J 4 HOH A 32 332 69 HOH HOH . J 4 HOH A 33 333 392 HOH HOH . J 4 HOH A 34 334 39 HOH HOH . J 4 HOH A 35 335 18 HOH HOH . J 4 HOH A 36 336 96 HOH HOH . J 4 HOH A 37 337 123 HOH HOH . J 4 HOH A 38 338 180 HOH HOH . J 4 HOH A 39 339 51 HOH HOH . J 4 HOH A 40 340 125 HOH HOH . J 4 HOH A 41 341 16 HOH HOH . J 4 HOH A 42 342 138 HOH HOH . J 4 HOH A 43 343 30 HOH HOH . J 4 HOH A 44 344 7 HOH HOH . J 4 HOH A 45 345 143 HOH HOH . J 4 HOH A 46 346 127 HOH HOH . J 4 HOH A 47 347 115 HOH HOH . J 4 HOH A 48 348 101 HOH HOH . J 4 HOH A 49 349 235 HOH HOH . J 4 HOH A 50 350 64 HOH HOH . J 4 HOH A 51 351 70 HOH HOH . J 4 HOH A 52 352 57 HOH HOH . J 4 HOH A 53 353 226 HOH HOH . J 4 HOH A 54 354 152 HOH HOH . J 4 HOH A 55 355 150 HOH HOH . J 4 HOH A 56 356 206 HOH HOH . J 4 HOH A 57 357 169 HOH HOH . J 4 HOH A 58 358 95 HOH HOH . J 4 HOH A 59 359 62 HOH HOH . J 4 HOH A 60 360 175 HOH HOH . J 4 HOH A 61 361 130 HOH HOH . J 4 HOH A 62 362 144 HOH HOH . J 4 HOH A 63 363 146 HOH HOH . J 4 HOH A 64 364 389 HOH HOH . J 4 HOH A 65 365 124 HOH HOH . J 4 HOH A 66 366 79 HOH HOH . J 4 HOH A 67 367 390 HOH HOH . K 4 HOH B 1 301 395 HOH HOH . K 4 HOH B 2 302 41 HOH HOH . K 4 HOH B 3 303 23 HOH HOH . K 4 HOH B 4 304 91 HOH HOH . K 4 HOH B 5 305 36 HOH HOH . K 4 HOH B 6 306 111 HOH HOH . K 4 HOH B 7 307 107 HOH HOH . K 4 HOH B 8 308 92 HOH HOH . K 4 HOH B 9 309 22 HOH HOH . K 4 HOH B 10 310 94 HOH HOH . K 4 HOH B 11 311 13 HOH HOH . K 4 HOH B 12 312 25 HOH HOH . K 4 HOH B 13 313 73 HOH HOH . K 4 HOH B 14 314 40 HOH HOH . K 4 HOH B 15 315 26 HOH HOH . K 4 HOH B 16 316 232 HOH HOH . K 4 HOH B 17 317 17 HOH HOH . K 4 HOH B 18 318 55 HOH HOH . K 4 HOH B 19 319 145 HOH HOH . K 4 HOH B 20 320 154 HOH HOH . K 4 HOH B 21 321 178 HOH HOH . K 4 HOH B 22 322 75 HOH HOH . K 4 HOH B 23 323 15 HOH HOH . K 4 HOH B 24 324 141 HOH HOH . K 4 HOH B 25 325 46 HOH HOH . K 4 HOH B 26 326 192 HOH HOH . K 4 HOH B 27 327 148 HOH HOH . K 4 HOH B 28 328 179 HOH HOH . K 4 HOH B 29 329 77 HOH HOH . K 4 HOH B 30 330 182 HOH HOH . K 4 HOH B 31 331 11 HOH HOH . K 4 HOH B 32 332 21 HOH HOH . K 4 HOH B 33 333 108 HOH HOH . K 4 HOH B 34 334 128 HOH HOH . K 4 HOH B 35 335 61 HOH HOH . K 4 HOH B 36 336 87 HOH HOH . K 4 HOH B 37 337 6 HOH HOH . K 4 HOH B 38 338 86 HOH HOH . K 4 HOH B 39 339 120 HOH HOH . K 4 HOH B 40 340 88 HOH HOH . K 4 HOH B 41 341 4 HOH HOH . K 4 HOH B 42 342 8 HOH HOH . K 4 HOH B 43 343 140 HOH HOH . K 4 HOH B 44 344 78 HOH HOH . K 4 HOH B 45 345 85 HOH HOH . K 4 HOH B 46 346 193 HOH HOH . K 4 HOH B 47 347 204 HOH HOH . K 4 HOH B 48 348 160 HOH HOH . K 4 HOH B 49 349 121 HOH HOH . K 4 HOH B 50 350 244 HOH HOH . K 4 HOH B 51 351 134 HOH HOH . K 4 HOH B 52 352 234 HOH HOH . K 4 HOH B 53 353 100 HOH HOH . K 4 HOH B 54 354 165 HOH HOH . K 4 HOH B 55 355 158 HOH HOH . K 4 HOH B 56 356 361 HOH HOH . K 4 HOH B 57 357 363 HOH HOH . K 4 HOH B 58 358 159 HOH HOH . K 4 HOH B 59 359 167 HOH HOH . L 4 HOH C 1 301 391 HOH HOH . L 4 HOH C 2 302 388 HOH HOH . L 4 HOH C 3 303 5 HOH HOH . L 4 HOH C 4 304 29 HOH HOH . L 4 HOH C 5 305 20 HOH HOH . L 4 HOH C 6 306 99 HOH HOH . L 4 HOH C 7 307 166 HOH HOH . L 4 HOH C 8 308 83 HOH HOH . L 4 HOH C 9 309 181 HOH HOH . L 4 HOH C 10 310 82 HOH HOH . L 4 HOH C 11 311 119 HOH HOH . L 4 HOH C 12 312 163 HOH HOH . L 4 HOH C 13 313 113 HOH HOH . L 4 HOH C 14 314 74 HOH HOH . L 4 HOH C 15 315 52 HOH HOH . L 4 HOH C 16 316 72 HOH HOH . L 4 HOH C 17 317 129 HOH HOH . L 4 HOH C 18 318 31 HOH HOH . L 4 HOH C 19 319 106 HOH HOH . L 4 HOH C 20 320 153 HOH HOH . L 4 HOH C 21 321 118 HOH HOH . L 4 HOH C 22 322 60 HOH HOH . L 4 HOH C 23 323 126 HOH HOH . L 4 HOH C 24 324 53 HOH HOH . L 4 HOH C 25 325 10 HOH HOH . L 4 HOH C 26 326 66 HOH HOH . L 4 HOH C 27 327 90 HOH HOH . L 4 HOH C 28 328 189 HOH HOH . L 4 HOH C 29 329 71 HOH HOH . L 4 HOH C 30 330 147 HOH HOH . L 4 HOH C 31 331 133 HOH HOH . L 4 HOH C 32 332 245 HOH HOH . L 4 HOH C 33 333 151 HOH HOH . L 4 HOH C 34 334 362 HOH HOH . L 4 HOH C 35 335 102 HOH HOH . L 4 HOH C 36 336 65 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 3 _atom_site.Cartn_x 27.203 _atom_site.Cartn_y 5.994 _atom_site.Cartn_z 8.878 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 24.88 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 202 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #