data_6HDH # _model_server_result.job_id kmD3zz6jiv4-SXK4NtskPA _model_server_result.datetime_utc '2025-01-11 18:47:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hdh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":302}' # _entry.id 6HDH # _exptl.entry_id 6HDH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.41 _cell.angle_gamma 90 _cell.entry_id 6HDH _cell.length_a 38.13 _cell.length_b 117.23 _cell.length_c 53.01 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HDH _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,M 1 1 B,J,K,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 K N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 8 A ASP 8 1_555 C MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc2 A O ASP 10 A ASP 10 1_555 C MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc3 A OE1 GLU 169 A GLU 169 1_555 C MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc4 A OD1 ASP 170 A ASP 170 1_555 C MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc5 C MG MG . A MG 301 1_555 M O HOH . A HOH 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc6 B OD2 ASP 8 B ASP 8 1_555 J MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc7 B O ASP 10 B ASP 10 1_555 J MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc8 B OE1 GLU 169 B GLU 169 1_555 J MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc9 B OD1 ASP 170 B ASP 170 1_555 J MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc10 J MG MG . B MG 301 1_555 N O HOH . B HOH 484 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 76 n n C1 C2 EDO sing 77 n n C1 H11 EDO sing 78 n n C1 H12 EDO sing 79 n n O1 HO1 EDO sing 80 n n C2 O2 EDO sing 81 n n C2 H21 EDO sing 82 n n C2 H22 EDO sing 83 n n O2 HO2 EDO sing 84 n n # _atom_sites.entry_id 6HDH _atom_sites.fract_transf_matrix[1][1] 0.026226 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003411 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00853 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019023 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 301 1 MG MG . D 3 EDO A 1 302 1 EDO EDO . E 3 EDO A 1 303 3 EDO EDO . F 3 EDO A 1 304 4 EDO EDO . G 3 EDO A 1 305 5 EDO EDO . H 3 EDO A 1 306 6 EDO EDO . I 4 ACT A 1 307 1 ACT ACT . J 2 MG B 1 301 2 MG MG . K 3 EDO B 1 302 2 EDO EDO . L 3 EDO B 1 303 7 EDO EDO . M 5 HOH A 1 401 63 HOH HOH . M 5 HOH A 2 402 152 HOH HOH . M 5 HOH A 3 403 74 HOH HOH . M 5 HOH A 4 404 95 HOH HOH . M 5 HOH A 5 405 119 HOH HOH . M 5 HOH A 6 406 163 HOH HOH . M 5 HOH A 7 407 93 HOH HOH . M 5 HOH A 8 408 125 HOH HOH . M 5 HOH A 9 409 216 HOH HOH . M 5 HOH A 10 410 70 HOH HOH . M 5 HOH A 11 411 76 HOH HOH . M 5 HOH A 12 412 55 HOH HOH . M 5 HOH A 13 413 99 HOH HOH . M 5 HOH A 14 414 8 HOH HOH . M 5 HOH A 15 415 193 HOH HOH . M 5 HOH A 16 416 50 HOH HOH . M 5 HOH A 17 417 159 HOH HOH . M 5 HOH A 18 418 154 HOH HOH . M 5 HOH A 19 419 183 HOH HOH . M 5 HOH A 20 420 146 HOH HOH . M 5 HOH A 21 421 166 HOH HOH . M 5 HOH A 22 422 82 HOH HOH . M 5 HOH A 23 423 105 HOH HOH . M 5 HOH A 24 424 46 HOH HOH . M 5 HOH A 25 425 130 HOH HOH . M 5 HOH A 26 426 107 HOH HOH . M 5 HOH A 27 427 102 HOH HOH . M 5 HOH A 28 428 7 HOH HOH . M 5 HOH A 29 429 47 HOH HOH . M 5 HOH A 30 430 25 HOH HOH . M 5 HOH A 31 431 41 HOH HOH . M 5 HOH A 32 432 36 HOH HOH . M 5 HOH A 33 433 88 HOH HOH . M 5 HOH A 34 434 144 HOH HOH . M 5 HOH A 35 435 72 HOH HOH . M 5 HOH A 36 436 56 HOH HOH . M 5 HOH A 37 437 182 HOH HOH . M 5 HOH A 38 438 118 HOH HOH . M 5 HOH A 39 439 112 HOH HOH . M 5 HOH A 40 440 22 HOH HOH . M 5 HOH A 41 441 13 HOH HOH . M 5 HOH A 42 442 26 HOH HOH . M 5 HOH A 43 443 17 HOH HOH . M 5 HOH A 44 444 71 HOH HOH . M 5 HOH A 45 445 164 HOH HOH . M 5 HOH A 46 446 205 HOH HOH . M 5 HOH A 47 447 73 HOH HOH . M 5 HOH A 48 448 10 HOH HOH . M 5 HOH A 49 449 49 HOH HOH . M 5 HOH A 50 450 155 HOH HOH . M 5 HOH A 51 451 85 HOH HOH . M 5 HOH A 52 452 117 HOH HOH . M 5 HOH A 53 453 23 HOH HOH . M 5 HOH A 54 454 195 HOH HOH . M 5 HOH A 55 455 122 HOH HOH . M 5 HOH A 56 456 138 HOH HOH . M 5 HOH A 57 457 14 HOH HOH . M 5 HOH A 58 458 43 HOH HOH . M 5 HOH A 59 459 111 HOH HOH . M 5 HOH A 60 460 126 HOH HOH . M 5 HOH A 61 461 141 HOH HOH . M 5 HOH A 62 462 84 HOH HOH . M 5 HOH A 63 463 9 HOH HOH . M 5 HOH A 64 464 123 HOH HOH . M 5 HOH A 65 465 153 HOH HOH . M 5 HOH A 66 466 58 HOH HOH . M 5 HOH A 67 467 162 HOH HOH . M 5 HOH A 68 468 189 HOH HOH . M 5 HOH A 69 469 91 HOH HOH . M 5 HOH A 70 470 158 HOH HOH . M 5 HOH A 71 471 60 HOH HOH . M 5 HOH A 72 472 12 HOH HOH . M 5 HOH A 73 473 65 HOH HOH . M 5 HOH A 74 474 116 HOH HOH . M 5 HOH A 75 475 194 HOH HOH . M 5 HOH A 76 476 64 HOH HOH . M 5 HOH A 77 477 131 HOH HOH . M 5 HOH A 78 478 139 HOH HOH . M 5 HOH A 79 479 106 HOH HOH . M 5 HOH A 80 480 24 HOH HOH . M 5 HOH A 81 481 209 HOH HOH . M 5 HOH A 82 482 96 HOH HOH . M 5 HOH A 83 483 35 HOH HOH . M 5 HOH A 84 484 48 HOH HOH . M 5 HOH A 85 485 222 HOH HOH . M 5 HOH A 86 486 212 HOH HOH . M 5 HOH A 87 487 178 HOH HOH . M 5 HOH A 88 488 190 HOH HOH . M 5 HOH A 89 489 98 HOH HOH . M 5 HOH A 90 490 201 HOH HOH . M 5 HOH A 91 491 38 HOH HOH . M 5 HOH A 92 492 100 HOH HOH . M 5 HOH A 93 493 203 HOH HOH . M 5 HOH A 94 494 186 HOH HOH . M 5 HOH A 95 495 75 HOH HOH . M 5 HOH A 96 496 127 HOH HOH . N 5 HOH B 1 401 115 HOH HOH . N 5 HOH B 2 402 188 HOH HOH . N 5 HOH B 3 403 221 HOH HOH . N 5 HOH B 4 404 42 HOH HOH . N 5 HOH B 5 405 132 HOH HOH . N 5 HOH B 6 406 192 HOH HOH . N 5 HOH B 7 407 196 HOH HOH . N 5 HOH B 8 408 59 HOH HOH . N 5 HOH B 9 409 129 HOH HOH . N 5 HOH B 10 410 165 HOH HOH . N 5 HOH B 11 411 142 HOH HOH . N 5 HOH B 12 412 89 HOH HOH . N 5 HOH B 13 413 108 HOH HOH . N 5 HOH B 14 414 137 HOH HOH . N 5 HOH B 15 415 53 HOH HOH . N 5 HOH B 16 416 197 HOH HOH . N 5 HOH B 17 417 54 HOH HOH . N 5 HOH B 18 418 134 HOH HOH . N 5 HOH B 19 419 191 HOH HOH . N 5 HOH B 20 420 68 HOH HOH . N 5 HOH B 21 421 113 HOH HOH . N 5 HOH B 22 422 44 HOH HOH . N 5 HOH B 23 423 136 HOH HOH . N 5 HOH B 24 424 57 HOH HOH . N 5 HOH B 25 425 62 HOH HOH . N 5 HOH B 26 426 148 HOH HOH . N 5 HOH B 27 427 169 HOH HOH . N 5 HOH B 28 428 83 HOH HOH . N 5 HOH B 29 429 135 HOH HOH . N 5 HOH B 30 430 120 HOH HOH . N 5 HOH B 31 431 5 HOH HOH . N 5 HOH B 32 432 81 HOH HOH . N 5 HOH B 33 433 28 HOH HOH . N 5 HOH B 34 434 92 HOH HOH . N 5 HOH B 35 435 61 HOH HOH . N 5 HOH B 36 436 34 HOH HOH . N 5 HOH B 37 437 215 HOH HOH . N 5 HOH B 38 438 77 HOH HOH . N 5 HOH B 39 439 6 HOH HOH . N 5 HOH B 40 440 185 HOH HOH . N 5 HOH B 41 441 90 HOH HOH . N 5 HOH B 42 442 32 HOH HOH . N 5 HOH B 43 443 51 HOH HOH . N 5 HOH B 44 444 160 HOH HOH . N 5 HOH B 45 445 69 HOH HOH . N 5 HOH B 46 446 181 HOH HOH . N 5 HOH B 47 447 94 HOH HOH . N 5 HOH B 48 448 31 HOH HOH . N 5 HOH B 49 449 213 HOH HOH . N 5 HOH B 50 450 40 HOH HOH . N 5 HOH B 51 451 87 HOH HOH . N 5 HOH B 52 452 156 HOH HOH . N 5 HOH B 53 453 143 HOH HOH . N 5 HOH B 54 454 15 HOH HOH . N 5 HOH B 55 455 104 HOH HOH . N 5 HOH B 56 456 97 HOH HOH . N 5 HOH B 57 457 121 HOH HOH . N 5 HOH B 58 458 19 HOH HOH . N 5 HOH B 59 459 161 HOH HOH . N 5 HOH B 60 460 16 HOH HOH . N 5 HOH B 61 461 29 HOH HOH . N 5 HOH B 62 462 150 HOH HOH . N 5 HOH B 63 463 39 HOH HOH . N 5 HOH B 64 464 30 HOH HOH . N 5 HOH B 65 465 4 HOH HOH . N 5 HOH B 66 466 20 HOH HOH . N 5 HOH B 67 467 184 HOH HOH . N 5 HOH B 68 468 133 HOH HOH . N 5 HOH B 69 469 78 HOH HOH . N 5 HOH B 70 470 11 HOH HOH . N 5 HOH B 71 471 33 HOH HOH . N 5 HOH B 72 472 220 HOH HOH . N 5 HOH B 73 473 103 HOH HOH . N 5 HOH B 74 474 109 HOH HOH . N 5 HOH B 75 475 37 HOH HOH . N 5 HOH B 76 476 149 HOH HOH . N 5 HOH B 77 477 151 HOH HOH . N 5 HOH B 78 478 170 HOH HOH . N 5 HOH B 79 479 79 HOH HOH . N 5 HOH B 80 480 86 HOH HOH . N 5 HOH B 81 481 101 HOH HOH . N 5 HOH B 82 482 114 HOH HOH . N 5 HOH B 83 483 168 HOH HOH . N 5 HOH B 84 484 179 HOH HOH . N 5 HOH B 85 485 18 HOH HOH . N 5 HOH B 86 486 174 HOH HOH . N 5 HOH B 87 487 147 HOH HOH . N 5 HOH B 88 488 67 HOH HOH . N 5 HOH B 89 489 21 HOH HOH . N 5 HOH B 90 490 217 HOH HOH . N 5 HOH B 91 491 140 HOH HOH . N 5 HOH B 92 492 173 HOH HOH . N 5 HOH B 93 493 172 HOH HOH . N 5 HOH B 94 494 157 HOH HOH . N 5 HOH B 95 495 175 HOH HOH . N 5 HOH B 96 496 177 HOH HOH . N 5 HOH B 97 497 214 HOH HOH . N 5 HOH B 98 498 200 HOH HOH . N 5 HOH B 99 499 202 HOH HOH . N 5 HOH B 100 500 180 HOH HOH . N 5 HOH B 101 501 124 HOH HOH . N 5 HOH B 102 502 167 HOH HOH . N 5 HOH B 103 503 204 HOH HOH . N 5 HOH B 104 504 187 HOH HOH . N 5 HOH B 105 505 52 HOH HOH . N 5 HOH B 106 506 206 HOH HOH . N 5 HOH B 107 507 66 HOH HOH . N 5 HOH B 108 508 110 HOH HOH . N 5 HOH B 109 509 27 HOH HOH . N 5 HOH B 110 510 80 HOH HOH . N 5 HOH B 111 511 208 HOH HOH . N 5 HOH B 112 512 210 HOH HOH . N 5 HOH B 113 513 171 HOH HOH . N 5 HOH B 114 514 176 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . K 3 22.9 -23.133 12.859 1 44.17 ? C1 EDO 302 B 1 HETATM 2 O O1 EDO . . . K 3 22.599 -23.613 14.174 1 37.1 ? O1 EDO 302 B 1 HETATM 3 C C2 EDO . . . K 3 24.202 -23.732 12.384 1 44.37 ? C2 EDO 302 B 1 HETATM 4 O O2 EDO . . . K 3 24.969 -23.96 13.55 1 44.44 ? O2 EDO 302 B 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 21 _model_server_stats.element_count 4 #