data_6HDI # _model_server_result.job_id yF0uV-oRUvax-ePj2BtNdQ _model_server_result.datetime_utc '2024-11-27 15:58:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hdi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 6HDI # _exptl.entry_id 6HDI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.09 _cell.angle_gamma 90 _cell.entry_id 6HDI _cell.length_a 38.2 _cell.length_b 116.9 _cell.length_c 53.17 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HDI _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,I 1 1 B,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 8 A ASP 8 1_555 C MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc2 A O ASP 10 A ASP 10 1_555 C MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc3 A OE1 GLU 169 A GLU 169 1_555 C MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc4 A OD1 ASP 170 A ASP 170 1_555 C MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc5 C MG MG . A MG 301 1_555 I O HOH . A HOH 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.967 ? metalc ? metalc6 C MG MG . A MG 301 1_555 I O HOH . A HOH 484 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc7 B OD2 ASP 8 B ASP 8 1_555 G MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc8 B O ASP 10 B ASP 10 1_555 G MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc9 B OE1 GLU 169 B GLU 169 1_555 G MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.705 ? metalc ? metalc10 B OD1 ASP 170 B ASP 170 1_555 G MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 70 n n C1 C2 EDO sing 71 n n C1 H11 EDO sing 72 n n C1 H12 EDO sing 73 n n O1 HO1 EDO sing 74 n n C2 O2 EDO sing 75 n n C2 H21 EDO sing 76 n n C2 H22 EDO sing 77 n n O2 HO2 EDO sing 78 n n # _atom_sites.entry_id 6HDI _atom_sites.fract_transf_matrix[1][1] 0.026178 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003721 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008554 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018997 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 301 1 MG MG . D 3 EDO A 1 302 2 EDO EDO . E 3 EDO A 1 303 3 EDO EDO . F 3 EDO A 1 304 4 EDO EDO . G 2 MG B 1 301 2 MG MG . H 3 EDO B 1 302 1 EDO EDO . I 4 HOH A 1 401 124 HOH HOH . I 4 HOH A 2 402 88 HOH HOH . I 4 HOH A 3 403 234 HOH HOH . I 4 HOH A 4 404 123 HOH HOH . I 4 HOH A 5 405 141 HOH HOH . I 4 HOH A 6 406 75 HOH HOH . I 4 HOH A 7 407 94 HOH HOH . I 4 HOH A 8 408 257 HOH HOH . I 4 HOH A 9 409 143 HOH HOH . I 4 HOH A 10 410 261 HOH HOH . I 4 HOH A 11 411 215 HOH HOH . I 4 HOH A 12 412 104 HOH HOH . I 4 HOH A 13 413 121 HOH HOH . I 4 HOH A 14 414 27 HOH HOH . I 4 HOH A 15 415 110 HOH HOH . I 4 HOH A 16 416 113 HOH HOH . I 4 HOH A 17 417 80 HOH HOH . I 4 HOH A 18 418 57 HOH HOH . I 4 HOH A 19 419 25 HOH HOH . I 4 HOH A 20 420 76 HOH HOH . I 4 HOH A 21 421 99 HOH HOH . I 4 HOH A 22 422 70 HOH HOH . I 4 HOH A 23 423 22 HOH HOH . I 4 HOH A 24 424 68 HOH HOH . I 4 HOH A 25 425 35 HOH HOH . I 4 HOH A 26 426 164 HOH HOH . I 4 HOH A 27 427 129 HOH HOH . I 4 HOH A 28 428 125 HOH HOH . I 4 HOH A 29 429 212 HOH HOH . I 4 HOH A 30 430 2 HOH HOH . I 4 HOH A 31 431 128 HOH HOH . I 4 HOH A 32 432 179 HOH HOH . I 4 HOH A 33 433 139 HOH HOH . I 4 HOH A 34 434 10 HOH HOH . I 4 HOH A 35 435 82 HOH HOH . I 4 HOH A 36 436 47 HOH HOH . I 4 HOH A 37 437 136 HOH HOH . I 4 HOH A 38 438 93 HOH HOH . I 4 HOH A 39 439 65 HOH HOH . I 4 HOH A 40 440 23 HOH HOH . I 4 HOH A 41 441 21 HOH HOH . I 4 HOH A 42 442 95 HOH HOH . I 4 HOH A 43 443 100 HOH HOH . I 4 HOH A 44 444 83 HOH HOH . I 4 HOH A 45 445 89 HOH HOH . I 4 HOH A 46 446 5 HOH HOH . I 4 HOH A 47 447 53 HOH HOH . I 4 HOH A 48 448 24 HOH HOH . I 4 HOH A 49 449 66 HOH HOH . I 4 HOH A 50 450 67 HOH HOH . I 4 HOH A 51 451 178 HOH HOH . I 4 HOH A 52 452 7 HOH HOH . I 4 HOH A 53 453 62 HOH HOH . I 4 HOH A 54 454 39 HOH HOH . I 4 HOH A 55 455 79 HOH HOH . I 4 HOH A 56 456 196 HOH HOH . I 4 HOH A 57 457 9 HOH HOH . I 4 HOH A 58 458 231 HOH HOH . I 4 HOH A 59 459 216 HOH HOH . I 4 HOH A 60 460 13 HOH HOH . I 4 HOH A 61 461 81 HOH HOH . I 4 HOH A 62 462 208 HOH HOH . I 4 HOH A 63 463 226 HOH HOH . I 4 HOH A 64 464 171 HOH HOH . I 4 HOH A 65 465 114 HOH HOH . I 4 HOH A 66 466 16 HOH HOH . I 4 HOH A 67 467 8 HOH HOH . I 4 HOH A 68 468 55 HOH HOH . I 4 HOH A 69 469 237 HOH HOH . I 4 HOH A 70 470 64 HOH HOH . I 4 HOH A 71 471 166 HOH HOH . I 4 HOH A 72 472 162 HOH HOH . I 4 HOH A 73 473 211 HOH HOH . I 4 HOH A 74 474 61 HOH HOH . I 4 HOH A 75 475 20 HOH HOH . I 4 HOH A 76 476 18 HOH HOH . I 4 HOH A 77 477 194 HOH HOH . I 4 HOH A 78 478 50 HOH HOH . I 4 HOH A 79 479 201 HOH HOH . I 4 HOH A 80 480 182 HOH HOH . I 4 HOH A 81 481 119 HOH HOH . I 4 HOH A 82 482 112 HOH HOH . I 4 HOH A 83 483 144 HOH HOH . I 4 HOH A 84 484 134 HOH HOH . I 4 HOH A 85 485 198 HOH HOH . I 4 HOH A 86 486 163 HOH HOH . I 4 HOH A 87 487 247 HOH HOH . I 4 HOH A 88 488 191 HOH HOH . I 4 HOH A 89 489 111 HOH HOH . I 4 HOH A 90 490 108 HOH HOH . I 4 HOH A 91 491 199 HOH HOH . I 4 HOH A 92 492 174 HOH HOH . I 4 HOH A 93 493 165 HOH HOH . I 4 HOH A 94 494 151 HOH HOH . I 4 HOH A 95 495 181 HOH HOH . I 4 HOH A 96 496 36 HOH HOH . I 4 HOH A 97 497 202 HOH HOH . I 4 HOH A 98 498 176 HOH HOH . I 4 HOH A 99 499 218 HOH HOH . I 4 HOH A 100 500 170 HOH HOH . I 4 HOH A 101 501 177 HOH HOH . I 4 HOH A 102 502 158 HOH HOH . I 4 HOH A 103 503 175 HOH HOH . I 4 HOH A 104 504 236 HOH HOH . I 4 HOH A 105 505 221 HOH HOH . I 4 HOH A 106 506 105 HOH HOH . I 4 HOH A 107 507 152 HOH HOH . I 4 HOH A 108 508 238 HOH HOH . I 4 HOH A 109 509 253 HOH HOH . I 4 HOH A 110 510 244 HOH HOH . I 4 HOH A 111 511 169 HOH HOH . I 4 HOH A 112 512 259 HOH HOH . I 4 HOH A 113 513 246 HOH HOH . I 4 HOH A 114 514 223 HOH HOH . I 4 HOH A 115 515 240 HOH HOH . I 4 HOH A 116 516 150 HOH HOH . I 4 HOH A 117 517 189 HOH HOH . I 4 HOH A 118 518 116 HOH HOH . I 4 HOH A 119 519 241 HOH HOH . I 4 HOH A 120 520 248 HOH HOH . I 4 HOH A 121 521 252 HOH HOH . J 4 HOH B 1 401 192 HOH HOH . J 4 HOH B 2 402 133 HOH HOH . J 4 HOH B 3 403 186 HOH HOH . J 4 HOH B 4 404 193 HOH HOH . J 4 HOH B 5 405 140 HOH HOH . J 4 HOH B 6 406 92 HOH HOH . J 4 HOH B 7 407 86 HOH HOH . J 4 HOH B 8 408 19 HOH HOH . J 4 HOH B 9 409 142 HOH HOH . J 4 HOH B 10 410 45 HOH HOH . J 4 HOH B 11 411 204 HOH HOH . J 4 HOH B 12 412 14 HOH HOH . J 4 HOH B 13 413 74 HOH HOH . J 4 HOH B 14 414 4 HOH HOH . J 4 HOH B 15 415 42 HOH HOH . J 4 HOH B 16 416 12 HOH HOH . J 4 HOH B 17 417 31 HOH HOH . J 4 HOH B 18 418 101 HOH HOH . J 4 HOH B 19 419 84 HOH HOH . J 4 HOH B 20 420 1 HOH HOH . J 4 HOH B 21 421 120 HOH HOH . J 4 HOH B 22 422 206 HOH HOH . J 4 HOH B 23 423 96 HOH HOH . J 4 HOH B 24 424 6 HOH HOH . J 4 HOH B 25 425 73 HOH HOH . J 4 HOH B 26 426 38 HOH HOH . J 4 HOH B 27 427 147 HOH HOH . J 4 HOH B 28 428 71 HOH HOH . J 4 HOH B 29 429 137 HOH HOH . J 4 HOH B 30 430 15 HOH HOH . J 4 HOH B 31 431 210 HOH HOH . J 4 HOH B 32 432 126 HOH HOH . J 4 HOH B 33 433 146 HOH HOH . J 4 HOH B 34 434 40 HOH HOH . J 4 HOH B 35 435 87 HOH HOH . J 4 HOH B 36 436 205 HOH HOH . J 4 HOH B 37 437 130 HOH HOH . J 4 HOH B 38 438 127 HOH HOH . J 4 HOH B 39 439 49 HOH HOH . J 4 HOH B 40 440 85 HOH HOH . J 4 HOH B 41 441 59 HOH HOH . J 4 HOH B 42 442 122 HOH HOH . J 4 HOH B 43 443 30 HOH HOH . J 4 HOH B 44 444 245 HOH HOH . J 4 HOH B 45 445 78 HOH HOH . J 4 HOH B 46 446 138 HOH HOH . J 4 HOH B 47 447 46 HOH HOH . J 4 HOH B 48 448 28 HOH HOH . J 4 HOH B 49 449 149 HOH HOH . J 4 HOH B 50 450 26 HOH HOH . J 4 HOH B 51 451 190 HOH HOH . J 4 HOH B 52 452 135 HOH HOH . J 4 HOH B 53 453 33 HOH HOH . J 4 HOH B 54 454 48 HOH HOH . J 4 HOH B 55 455 72 HOH HOH . J 4 HOH B 56 456 117 HOH HOH . J 4 HOH B 57 457 200 HOH HOH . J 4 HOH B 58 458 91 HOH HOH . J 4 HOH B 59 459 44 HOH HOH . J 4 HOH B 60 460 34 HOH HOH . J 4 HOH B 61 461 29 HOH HOH . J 4 HOH B 62 462 90 HOH HOH . J 4 HOH B 63 463 157 HOH HOH . J 4 HOH B 64 464 69 HOH HOH . J 4 HOH B 65 465 195 HOH HOH . J 4 HOH B 66 466 32 HOH HOH . J 4 HOH B 67 467 254 HOH HOH . J 4 HOH B 68 468 58 HOH HOH . J 4 HOH B 69 469 3 HOH HOH . J 4 HOH B 70 470 109 HOH HOH . J 4 HOH B 71 471 185 HOH HOH . J 4 HOH B 72 472 37 HOH HOH . J 4 HOH B 73 473 209 HOH HOH . J 4 HOH B 74 474 11 HOH HOH . J 4 HOH B 75 475 232 HOH HOH . J 4 HOH B 76 476 77 HOH HOH . J 4 HOH B 77 477 217 HOH HOH . J 4 HOH B 78 478 60 HOH HOH . J 4 HOH B 79 479 56 HOH HOH . J 4 HOH B 80 480 168 HOH HOH . J 4 HOH B 81 481 118 HOH HOH . J 4 HOH B 82 482 173 HOH HOH . J 4 HOH B 83 483 161 HOH HOH . J 4 HOH B 84 484 159 HOH HOH . J 4 HOH B 85 485 203 HOH HOH . J 4 HOH B 86 486 180 HOH HOH . J 4 HOH B 87 487 97 HOH HOH . J 4 HOH B 88 488 160 HOH HOH . J 4 HOH B 89 489 197 HOH HOH . J 4 HOH B 90 490 153 HOH HOH . J 4 HOH B 91 491 225 HOH HOH . J 4 HOH B 92 492 251 HOH HOH . J 4 HOH B 93 493 145 HOH HOH . J 4 HOH B 94 494 187 HOH HOH . J 4 HOH B 95 495 172 HOH HOH . J 4 HOH B 96 496 220 HOH HOH . J 4 HOH B 97 497 219 HOH HOH . J 4 HOH B 98 498 184 HOH HOH . J 4 HOH B 99 499 167 HOH HOH . J 4 HOH B 100 500 132 HOH HOH . J 4 HOH B 101 501 256 HOH HOH . J 4 HOH B 102 502 52 HOH HOH . J 4 HOH B 103 503 258 HOH HOH . J 4 HOH B 104 504 233 HOH HOH . J 4 HOH B 105 505 228 HOH HOH . J 4 HOH B 106 506 224 HOH HOH . J 4 HOH B 107 507 239 HOH HOH . J 4 HOH B 108 508 249 HOH HOH . J 4 HOH B 109 509 227 HOH HOH . J 4 HOH B 110 510 188 HOH HOH . J 4 HOH B 111 511 54 HOH HOH . J 4 HOH B 112 512 242 HOH HOH . J 4 HOH B 113 513 106 HOH HOH . J 4 HOH B 114 514 255 HOH HOH . J 4 HOH B 115 515 222 HOH HOH . J 4 HOH B 116 516 235 HOH HOH . J 4 HOH B 117 517 243 HOH HOH . J 4 HOH B 118 518 250 HOH HOH . J 4 HOH B 119 519 230 HOH HOH . J 4 HOH B 120 520 260 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 3 8.084 4.616 15.036 1 41.83 ? C1 EDO 302 A 1 HETATM 2 O O1 EDO . . . D 3 8.692 3.34 15.22 1 33.57 ? O1 EDO 302 A 1 HETATM 3 C C2 EDO . . . D 3 8.989 5.57 14.268 1 38.86 ? C2 EDO 302 A 1 HETATM 4 O O2 EDO . . . D 3 9.983 4.836 13.54 1 48.43 ? O2 EDO 302 A 1 # _model_server_stats.io_time_ms 120 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #