data_6HDK # _model_server_result.job_id ir-0ywkZaEdbSVnSyCZaFg _model_server_result.datetime_utc '2025-01-10 08:30:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hdk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":306}' # _entry.id 6HDK # _exptl.entry_id 6HDK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6HDK _cell.length_a 37.23 _cell.length_b 54.29 _cell.length_c 104.24 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HDK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 8 A ASP 8 1_555 H MG MG . A MG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc2 A O ASP 10 A ASP 10 1_555 H MG MG . A MG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc3 A O GLU 124 A GLU 124 1_555 C NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc4 A OD1 ASN 127 A ASN 127 1_555 C NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc5 A O THR 129 A THR 129 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc6 A O PHE 132 A PHE 132 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc7 A OD1 ASP 170 A ASP 170 1_555 H MG MG . A MG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc8 C NA NA . A NA 302 1_555 J O HOH . A HOH 479 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc9 C NA NA . A NA 302 1_555 J O HOH . A HOH 543 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc10 C NA NA . A NA 302 1_555 J O HOH . A HOH 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc11 C NA NA . A NA 302 1_555 J O HOH . A HOH 571 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc12 D NA NA . A NA 303 1_555 J O HOH . A HOH 541 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc13 D NA NA . A NA 303 1_555 J O HOH . A HOH 569 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.662 ? metalc ? metalc14 D NA NA . A NA 303 1_555 J O HOH . A HOH 574 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc15 H MG MG . A MG 307 1_555 J O HOH . A HOH 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc16 H MG MG . A MG 307 1_555 J O HOH . A HOH 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 103 n n C1 C2 EDO sing 104 n n C1 H11 EDO sing 105 n n C1 H12 EDO sing 106 n n O1 HO1 EDO sing 107 n n C2 O2 EDO sing 108 n n C2 H21 EDO sing 109 n n C2 H22 EDO sing 110 n n O2 HO2 EDO sing 111 n n # _atom_sites.entry_id 6HDK _atom_sites.fract_transf_matrix[1][1] 0.02686 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01842 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009593 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ALF A 1 301 1 ALF ALF . C 3 NA A 1 302 1 NA NA . D 3 NA A 1 303 2 NA NA . E 4 EDO A 1 304 1 EDO EDO . F 4 EDO A 1 305 3 EDO EDO . G 4 EDO A 1 306 5 EDO EDO . H 5 MG A 1 307 1 MG MG . I 6 BG6 A 1 308 1 BG6 BG6 . J 7 HOH A 1 401 204 HOH HOH . J 7 HOH A 2 402 49 HOH HOH . J 7 HOH A 3 403 3 HOH HOH . J 7 HOH A 4 404 144 HOH HOH . J 7 HOH A 5 405 107 HOH HOH . J 7 HOH A 6 406 186 HOH HOH . J 7 HOH A 7 407 109 HOH HOH . J 7 HOH A 8 408 161 HOH HOH . J 7 HOH A 9 409 203 HOH HOH . J 7 HOH A 10 410 18 HOH HOH . J 7 HOH A 11 411 10 HOH HOH . J 7 HOH A 12 412 119 HOH HOH . J 7 HOH A 13 413 121 HOH HOH . J 7 HOH A 14 414 155 HOH HOH . J 7 HOH A 15 415 165 HOH HOH . J 7 HOH A 16 416 62 HOH HOH . J 7 HOH A 17 417 205 HOH HOH . J 7 HOH A 18 418 111 HOH HOH . J 7 HOH A 19 419 143 HOH HOH . J 7 HOH A 20 420 184 HOH HOH . J 7 HOH A 21 421 80 HOH HOH . J 7 HOH A 22 422 167 HOH HOH . J 7 HOH A 23 423 90 HOH HOH . J 7 HOH A 24 424 191 HOH HOH . J 7 HOH A 25 425 75 HOH HOH . J 7 HOH A 26 426 82 HOH HOH . J 7 HOH A 27 427 32 HOH HOH . J 7 HOH A 28 428 166 HOH HOH . J 7 HOH A 29 429 123 HOH HOH . J 7 HOH A 30 430 44 HOH HOH . J 7 HOH A 31 431 60 HOH HOH . J 7 HOH A 32 432 196 HOH HOH . J 7 HOH A 33 433 149 HOH HOH . J 7 HOH A 34 434 120 HOH HOH . J 7 HOH A 35 435 12 HOH HOH . J 7 HOH A 36 436 74 HOH HOH . J 7 HOH A 37 437 210 HOH HOH . J 7 HOH A 38 438 4 HOH HOH . J 7 HOH A 39 439 35 HOH HOH . J 7 HOH A 40 440 189 HOH HOH . J 7 HOH A 41 441 97 HOH HOH . J 7 HOH A 42 442 11 HOH HOH . J 7 HOH A 43 443 187 HOH HOH . J 7 HOH A 44 444 106 HOH HOH . J 7 HOH A 45 445 9 HOH HOH . J 7 HOH A 46 446 124 HOH HOH . J 7 HOH A 47 447 88 HOH HOH . J 7 HOH A 48 448 85 HOH HOH . J 7 HOH A 49 449 73 HOH HOH . J 7 HOH A 50 450 126 HOH HOH . J 7 HOH A 51 451 94 HOH HOH . J 7 HOH A 52 452 198 HOH HOH . J 7 HOH A 53 453 173 HOH HOH . J 7 HOH A 54 454 61 HOH HOH . J 7 HOH A 55 455 57 HOH HOH . J 7 HOH A 56 456 92 HOH HOH . J 7 HOH A 57 457 78 HOH HOH . J 7 HOH A 58 458 43 HOH HOH . J 7 HOH A 59 459 70 HOH HOH . J 7 HOH A 60 460 108 HOH HOH . J 7 HOH A 61 461 91 HOH HOH . J 7 HOH A 62 462 64 HOH HOH . J 7 HOH A 63 463 113 HOH HOH . J 7 HOH A 64 464 159 HOH HOH . J 7 HOH A 65 465 95 HOH HOH . J 7 HOH A 66 466 160 HOH HOH . J 7 HOH A 67 467 110 HOH HOH . J 7 HOH A 68 468 100 HOH HOH . J 7 HOH A 69 469 101 HOH HOH . J 7 HOH A 70 470 14 HOH HOH . J 7 HOH A 71 471 63 HOH HOH . J 7 HOH A 72 472 99 HOH HOH . J 7 HOH A 73 473 67 HOH HOH . J 7 HOH A 74 474 59 HOH HOH . J 7 HOH A 75 475 89 HOH HOH . J 7 HOH A 76 476 29 HOH HOH . J 7 HOH A 77 477 162 HOH HOH . J 7 HOH A 78 478 134 HOH HOH . J 7 HOH A 79 479 138 HOH HOH . J 7 HOH A 80 480 79 HOH HOH . J 7 HOH A 81 481 38 HOH HOH . J 7 HOH A 82 482 164 HOH HOH . J 7 HOH A 83 483 170 HOH HOH . J 7 HOH A 84 484 98 HOH HOH . J 7 HOH A 85 485 77 HOH HOH . J 7 HOH A 86 486 137 HOH HOH . J 7 HOH A 87 487 128 HOH HOH . J 7 HOH A 88 488 102 HOH HOH . J 7 HOH A 89 489 103 HOH HOH . J 7 HOH A 90 490 84 HOH HOH . J 7 HOH A 91 491 83 HOH HOH . J 7 HOH A 92 492 208 HOH HOH . J 7 HOH A 93 493 131 HOH HOH . J 7 HOH A 94 494 104 HOH HOH . J 7 HOH A 95 495 197 HOH HOH . J 7 HOH A 96 496 72 HOH HOH . J 7 HOH A 97 497 115 HOH HOH . J 7 HOH A 98 498 33 HOH HOH . J 7 HOH A 99 499 192 HOH HOH . J 7 HOH A 100 500 153 HOH HOH . J 7 HOH A 101 501 194 HOH HOH . J 7 HOH A 102 502 133 HOH HOH . J 7 HOH A 103 503 46 HOH HOH . J 7 HOH A 104 504 66 HOH HOH . J 7 HOH A 105 505 96 HOH HOH . J 7 HOH A 106 506 171 HOH HOH . J 7 HOH A 107 507 34 HOH HOH . J 7 HOH A 108 508 118 HOH HOH . J 7 HOH A 109 509 114 HOH HOH . J 7 HOH A 110 510 45 HOH HOH . J 7 HOH A 111 511 1 HOH HOH . J 7 HOH A 112 512 76 HOH HOH . J 7 HOH A 113 513 65 HOH HOH . J 7 HOH A 114 514 68 HOH HOH . J 7 HOH A 115 515 21 HOH HOH . J 7 HOH A 116 516 8 HOH HOH . J 7 HOH A 117 517 13 HOH HOH . J 7 HOH A 118 518 5 HOH HOH . J 7 HOH A 119 519 158 HOH HOH . J 7 HOH A 120 520 93 HOH HOH . J 7 HOH A 121 521 86 HOH HOH . J 7 HOH A 122 522 117 HOH HOH . J 7 HOH A 123 523 172 HOH HOH . J 7 HOH A 124 524 150 HOH HOH . J 7 HOH A 125 525 132 HOH HOH . J 7 HOH A 126 526 6 HOH HOH . J 7 HOH A 127 527 25 HOH HOH . J 7 HOH A 128 528 154 HOH HOH . J 7 HOH A 129 529 190 HOH HOH . J 7 HOH A 130 530 195 HOH HOH . J 7 HOH A 131 531 209 HOH HOH . J 7 HOH A 132 532 37 HOH HOH . J 7 HOH A 133 533 36 HOH HOH . J 7 HOH A 134 534 156 HOH HOH . J 7 HOH A 135 535 130 HOH HOH . J 7 HOH A 136 536 2 HOH HOH . J 7 HOH A 137 537 188 HOH HOH . J 7 HOH A 138 538 112 HOH HOH . J 7 HOH A 139 539 105 HOH HOH . J 7 HOH A 140 540 122 HOH HOH . J 7 HOH A 141 541 129 HOH HOH . J 7 HOH A 142 542 26 HOH HOH . J 7 HOH A 143 543 15 HOH HOH . J 7 HOH A 144 544 140 HOH HOH . J 7 HOH A 145 545 185 HOH HOH . J 7 HOH A 146 546 7 HOH HOH . J 7 HOH A 147 547 136 HOH HOH . J 7 HOH A 148 548 125 HOH HOH . J 7 HOH A 149 549 81 HOH HOH . J 7 HOH A 150 550 28 HOH HOH . J 7 HOH A 151 551 39 HOH HOH . J 7 HOH A 152 552 151 HOH HOH . J 7 HOH A 153 553 42 HOH HOH . J 7 HOH A 154 554 193 HOH HOH . J 7 HOH A 155 555 139 HOH HOH . J 7 HOH A 156 556 50 HOH HOH . J 7 HOH A 157 557 40 HOH HOH . J 7 HOH A 158 558 174 HOH HOH . J 7 HOH A 159 559 22 HOH HOH . J 7 HOH A 160 560 17 HOH HOH . J 7 HOH A 161 561 19 HOH HOH . J 7 HOH A 162 562 148 HOH HOH . J 7 HOH A 163 563 20 HOH HOH . J 7 HOH A 164 564 51 HOH HOH . J 7 HOH A 165 565 176 HOH HOH . J 7 HOH A 166 566 30 HOH HOH . J 7 HOH A 167 567 23 HOH HOH . J 7 HOH A 168 568 31 HOH HOH . J 7 HOH A 169 569 199 HOH HOH . J 7 HOH A 170 570 142 HOH HOH . J 7 HOH A 171 571 16 HOH HOH . J 7 HOH A 172 572 141 HOH HOH . J 7 HOH A 173 573 179 HOH HOH . J 7 HOH A 174 574 56 HOH HOH . J 7 HOH A 175 575 175 HOH HOH . J 7 HOH A 176 576 152 HOH HOH . J 7 HOH A 177 577 168 HOH HOH . J 7 HOH A 178 578 54 HOH HOH . J 7 HOH A 179 579 181 HOH HOH . J 7 HOH A 180 580 146 HOH HOH . J 7 HOH A 181 581 53 HOH HOH . J 7 HOH A 182 582 47 HOH HOH . J 7 HOH A 183 583 135 HOH HOH . J 7 HOH A 184 584 87 HOH HOH . J 7 HOH A 185 585 206 HOH HOH . J 7 HOH A 186 586 27 HOH HOH . J 7 HOH A 187 587 177 HOH HOH . J 7 HOH A 188 588 145 HOH HOH . J 7 HOH A 189 589 180 HOH HOH . J 7 HOH A 190 590 183 HOH HOH . J 7 HOH A 191 591 200 HOH HOH . J 7 HOH A 192 592 147 HOH HOH . J 7 HOH A 193 593 55 HOH HOH . J 7 HOH A 194 594 116 HOH HOH . J 7 HOH A 195 595 127 HOH HOH . J 7 HOH A 196 596 182 HOH HOH . J 7 HOH A 197 597 71 HOH HOH . J 7 HOH A 198 598 207 HOH HOH . J 7 HOH A 199 599 178 HOH HOH . J 7 HOH A 200 600 24 HOH HOH . J 7 HOH A 201 601 169 HOH HOH . J 7 HOH A 202 602 48 HOH HOH . J 7 HOH A 203 603 52 HOH HOH . J 7 HOH A 204 604 41 HOH HOH . J 7 HOH A 205 605 157 HOH HOH . J 7 HOH A 206 606 163 HOH HOH . J 7 HOH A 207 607 201 HOH HOH . J 7 HOH A 208 608 58 HOH HOH . J 7 HOH A 209 609 202 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 4 5.682 13.705 21.91 1 26.32 ? C1 EDO 306 A 1 HETATM 2 O O1 EDO . . . G 4 4.567 14.57 22.124 1 35.23 ? O1 EDO 306 A 1 HETATM 3 C C2 EDO . . . G 4 6.832 14.56 21.408 1 27.24 ? C2 EDO 306 A 1 HETATM 4 O O2 EDO . . . G 4 7.101 15.773 22.141 1 30.66 ? O2 EDO 306 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #