data_6HDP # _model_server_result.job_id dpFhSNzGzikJa8icAWGdJg _model_server_result.datetime_utc '2025-02-17 07:39:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hdp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 6HDP # _exptl.entry_id 6HDP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6HDP _cell.length_a 84.527 _cell.length_b 84.527 _cell.length_c 148.372 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HDP _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 258 A THR 308 1_555 A N PTR 259 A PTR 309 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C THR 258 A THR 308 1_555 A N PTR 259 A PTR 309 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale3 A C PTR 259 A PTR 309 1_555 A N ILE 260 A ILE 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale4 A C SER 334 A SER 384 1_555 A N SEP 335 A SEP 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale5 A C SEP 335 A SEP 385 1_555 A N LYS 336 A LYS 386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? metalc ? metalc1 C NA NA . A NA 502 1_555 D O HOH . A HOH 613 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.157 ? metalc ? metalc2 C NA NA . A NA 502 1_555 D O HOH . A HOH 613 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.157 ? metalc ? metalc3 C NA NA . A NA 502 1_555 D O HOH . A HOH 694 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc4 C NA NA . A NA 502 1_555 D O HOH . A HOH 694 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6HDP _atom_sites.fract_transf_matrix[1][1] 0.011831 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011831 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00674 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FZ5 A 1 501 1 FZ5 DRG . C 3 NA A 1 502 1 NA NA . D 4 HOH A 1 601 46 HOH HOH . D 4 HOH A 2 602 82 HOH HOH . D 4 HOH A 3 603 40 HOH HOH . D 4 HOH A 4 604 75 HOH HOH . D 4 HOH A 5 605 31 HOH HOH . D 4 HOH A 6 606 85 HOH HOH . D 4 HOH A 7 607 60 HOH HOH . D 4 HOH A 8 608 38 HOH HOH . D 4 HOH A 9 609 16 HOH HOH . D 4 HOH A 10 610 113 HOH HOH . D 4 HOH A 11 611 18 HOH HOH . D 4 HOH A 12 612 6 HOH HOH . D 4 HOH A 13 613 20 HOH HOH . D 4 HOH A 14 614 139 HOH HOH . D 4 HOH A 15 615 134 HOH HOH . D 4 HOH A 16 616 100 HOH HOH . D 4 HOH A 17 617 118 HOH HOH . D 4 HOH A 18 618 21 HOH HOH . D 4 HOH A 19 619 42 HOH HOH . D 4 HOH A 20 620 111 HOH HOH . D 4 HOH A 21 621 26 HOH HOH . D 4 HOH A 22 622 133 HOH HOH . D 4 HOH A 23 623 6 HOH HOH . D 4 HOH A 24 624 31 HOH HOH . D 4 HOH A 25 625 53 HOH HOH . D 4 HOH A 26 626 78 HOH HOH . D 4 HOH A 27 627 138 HOH HOH . D 4 HOH A 28 628 76 HOH HOH . D 4 HOH A 29 629 107 HOH HOH . D 4 HOH A 30 630 137 HOH HOH . D 4 HOH A 31 631 34 HOH HOH . D 4 HOH A 32 632 52 HOH HOH . D 4 HOH A 33 633 81 HOH HOH . D 4 HOH A 34 634 19 HOH HOH . D 4 HOH A 35 635 38 HOH HOH . D 4 HOH A 36 636 87 HOH HOH . D 4 HOH A 37 637 12 HOH HOH . D 4 HOH A 38 638 10 HOH HOH . D 4 HOH A 39 639 3 HOH HOH . D 4 HOH A 40 640 24 HOH HOH . D 4 HOH A 41 641 36 HOH HOH . D 4 HOH A 42 642 45 HOH HOH . D 4 HOH A 43 643 42 HOH HOH . D 4 HOH A 44 644 71 HOH HOH . D 4 HOH A 45 645 32 HOH HOH . D 4 HOH A 46 646 18 HOH HOH . D 4 HOH A 47 647 1 HOH HOH . D 4 HOH A 48 648 130 HOH HOH . D 4 HOH A 49 649 28 HOH HOH . D 4 HOH A 50 650 28 HOH HOH . D 4 HOH A 51 651 39 HOH HOH . D 4 HOH A 52 652 33 HOH HOH . D 4 HOH A 53 653 56 HOH HOH . D 4 HOH A 54 654 11 HOH HOH . D 4 HOH A 55 655 49 HOH HOH . D 4 HOH A 56 656 103 HOH HOH . D 4 HOH A 57 657 5 HOH HOH . D 4 HOH A 58 658 66 HOH HOH . D 4 HOH A 59 659 77 HOH HOH . D 4 HOH A 60 660 35 HOH HOH . D 4 HOH A 61 661 58 HOH HOH . D 4 HOH A 62 662 21 HOH HOH . D 4 HOH A 63 663 94 HOH HOH . D 4 HOH A 64 664 2 HOH HOH . D 4 HOH A 65 665 8 HOH HOH . D 4 HOH A 66 666 25 HOH HOH . D 4 HOH A 67 667 95 HOH HOH . D 4 HOH A 68 668 13 HOH HOH . D 4 HOH A 69 669 73 HOH HOH . D 4 HOH A 70 670 136 HOH HOH . D 4 HOH A 71 671 41 HOH HOH . D 4 HOH A 72 672 114 HOH HOH . D 4 HOH A 73 673 83 HOH HOH . D 4 HOH A 74 674 72 HOH HOH . D 4 HOH A 75 675 57 HOH HOH . D 4 HOH A 76 676 27 HOH HOH . D 4 HOH A 77 677 61 HOH HOH . D 4 HOH A 78 678 4 HOH HOH . D 4 HOH A 79 679 110 HOH HOH . D 4 HOH A 80 680 34 HOH HOH . D 4 HOH A 81 681 23 HOH HOH . D 4 HOH A 82 682 30 HOH HOH . D 4 HOH A 83 683 5 HOH HOH . D 4 HOH A 84 684 25 HOH HOH . D 4 HOH A 85 685 65 HOH HOH . D 4 HOH A 86 686 29 HOH HOH . D 4 HOH A 87 687 47 HOH HOH . D 4 HOH A 88 688 15 HOH HOH . D 4 HOH A 89 689 9 HOH HOH . D 4 HOH A 90 690 43 HOH HOH . D 4 HOH A 91 691 112 HOH HOH . D 4 HOH A 92 692 23 HOH HOH . D 4 HOH A 93 693 49 HOH HOH . D 4 HOH A 94 694 104 HOH HOH . D 4 HOH A 95 695 4 HOH HOH . D 4 HOH A 96 696 29 HOH HOH . D 4 HOH A 97 697 135 HOH HOH . D 4 HOH A 98 698 67 HOH HOH . D 4 HOH A 99 699 84 HOH HOH . D 4 HOH A 100 700 20 HOH HOH . D 4 HOH A 101 701 109 HOH HOH . D 4 HOH A 102 702 13 HOH HOH . D 4 HOH A 103 703 39 HOH HOH . D 4 HOH A 104 704 102 HOH HOH . D 4 HOH A 105 705 43 HOH HOH . D 4 HOH A 106 706 36 HOH HOH . D 4 HOH A 107 707 7 HOH HOH . D 4 HOH A 108 708 37 HOH HOH . D 4 HOH A 109 709 63 HOH HOH . D 4 HOH A 110 710 119 HOH HOH . D 4 HOH A 111 711 8 HOH HOH . D 4 HOH A 112 712 51 HOH HOH . D 4 HOH A 113 713 80 HOH HOH . D 4 HOH A 114 714 14 HOH HOH . D 4 HOH A 115 715 55 HOH HOH . D 4 HOH A 116 716 86 HOH HOH . D 4 HOH A 117 717 27 HOH HOH . D 4 HOH A 118 718 24 HOH HOH . D 4 HOH A 119 719 44 HOH HOH . D 4 HOH A 120 720 120 HOH HOH . D 4 HOH A 121 721 117 HOH HOH . D 4 HOH A 122 722 101 HOH HOH . D 4 HOH A 123 723 62 HOH HOH . D 4 HOH A 124 724 45 HOH HOH . D 4 HOH A 125 725 131 HOH HOH . D 4 HOH A 126 726 99 HOH HOH . D 4 HOH A 127 727 54 HOH HOH . D 4 HOH A 128 728 93 HOH HOH . D 4 HOH A 129 729 68 HOH HOH . D 4 HOH A 130 730 98 HOH HOH . D 4 HOH A 131 731 53 HOH HOH . D 4 HOH A 132 732 88 HOH HOH . D 4 HOH A 133 733 44 HOH HOH . D 4 HOH A 134 734 92 HOH HOH . D 4 HOH A 135 735 69 HOH HOH . D 4 HOH A 136 736 128 HOH HOH . D 4 HOH A 137 737 125 HOH HOH . D 4 HOH A 138 738 26 HOH HOH . D 4 HOH A 139 739 48 HOH HOH . D 4 HOH A 140 740 124 HOH HOH . D 4 HOH A 141 741 126 HOH HOH . D 4 HOH A 142 742 59 HOH HOH . D 4 HOH A 143 743 11 HOH HOH . D 4 HOH A 144 744 79 HOH HOH . D 4 HOH A 145 745 132 HOH HOH . D 4 HOH A 146 746 97 HOH HOH . D 4 HOH A 147 747 105 HOH HOH . D 4 HOH A 148 748 64 HOH HOH . D 4 HOH A 149 749 14 HOH HOH . D 4 HOH A 150 750 123 HOH HOH . D 4 HOH A 151 751 90 HOH HOH . D 4 HOH A 152 752 116 HOH HOH . D 4 HOH A 153 753 108 HOH HOH . D 4 HOH A 154 754 129 HOH HOH . D 4 HOH A 155 755 115 HOH HOH . D 4 HOH A 156 756 51 HOH HOH . D 4 HOH A 157 757 22 HOH HOH . D 4 HOH A 158 758 122 HOH HOH . D 4 HOH A 159 759 127 HOH HOH . D 4 HOH A 160 760 96 HOH HOH . D 4 HOH A 161 761 121 HOH HOH . D 4 HOH A 162 762 89 HOH HOH . D 4 HOH A 163 763 70 HOH HOH . D 4 HOH A 164 764 52 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 28.705 _atom_site.Cartn_y 28.705 _atom_site.Cartn_z 0 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 104.8 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 502 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #