data_6HDR # _model_server_result.job_id lWuNn4OTL9vX8b8yAItFLQ _model_server_result.datetime_utc '2024-11-22 23:40:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hdr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 6HDR # _exptl.entry_id 6HDR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6HDR _cell.length_a 83.642 _cell.length_b 83.642 _cell.length_c 148.916 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HDR _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 8 A SER 58 1_555 A N SEP 9 A SEP 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale2 A C SEP 9 A SEP 59 1_555 A N GLY 10 A GLY 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale3 A C THR 258 A THR 308 1_555 A N PTR 259 A PTR 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale4 A C PTR 259 A PTR 309 1_555 A N ILE 260 A ILE 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale5 A C SER 334 A SER 384 1_555 A N SEP 335 A SEP 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 A C SEP 335 A SEP 385 1_555 A N LYS 336 A LYS 386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 324 n n P O2 PO4 sing 325 n n P O3 PO4 sing 326 n n P O4 PO4 sing 327 n n # _atom_sites.entry_id 6HDR _atom_sites.fract_transf_matrix[1][1] 0.011956 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011956 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006715 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CC9 A 1 501 700 CC9 DRG . C 3 DTD A 1 502 505 DTD DTD . D 4 PO4 A 1 503 1 PO4 PO4 . E 5 HOH A 1 601 15 HOH HOH . E 5 HOH A 2 602 17 HOH HOH . E 5 HOH A 3 603 78 HOH HOH . E 5 HOH A 4 604 9 HOH HOH . E 5 HOH A 5 605 47 HOH HOH . E 5 HOH A 6 606 53 HOH HOH . E 5 HOH A 7 607 83 HOH HOH . E 5 HOH A 8 608 58 HOH HOH . E 5 HOH A 9 609 26 HOH HOH . E 5 HOH A 10 610 81 HOH HOH . E 5 HOH A 11 611 104 HOH HOH . E 5 HOH A 12 612 6 HOH HOH . E 5 HOH A 13 613 31 HOH HOH . E 5 HOH A 14 614 33 HOH HOH . E 5 HOH A 15 615 74 HOH HOH . E 5 HOH A 16 616 48 HOH HOH . E 5 HOH A 17 617 73 HOH HOH . E 5 HOH A 18 618 4 HOH HOH . E 5 HOH A 19 619 45 HOH HOH . E 5 HOH A 20 620 134 HOH HOH . E 5 HOH A 21 621 11 HOH HOH . E 5 HOH A 22 622 30 HOH HOH . E 5 HOH A 23 623 5 HOH HOH . E 5 HOH A 24 624 91 HOH HOH . E 5 HOH A 25 625 38 HOH HOH . E 5 HOH A 26 626 59 HOH HOH . E 5 HOH A 27 627 18 HOH HOH . E 5 HOH A 28 628 34 HOH HOH . E 5 HOH A 29 629 42 HOH HOH . E 5 HOH A 30 630 111 HOH HOH . E 5 HOH A 31 631 89 HOH HOH . E 5 HOH A 32 632 129 HOH HOH . E 5 HOH A 33 633 43 HOH HOH . E 5 HOH A 34 634 23 HOH HOH . E 5 HOH A 35 635 50 HOH HOH . E 5 HOH A 36 636 86 HOH HOH . E 5 HOH A 37 637 37 HOH HOH . E 5 HOH A 38 638 36 HOH HOH . E 5 HOH A 39 639 117 HOH HOH . E 5 HOH A 40 640 46 HOH HOH . E 5 HOH A 41 641 121 HOH HOH . E 5 HOH A 42 642 61 HOH HOH . E 5 HOH A 43 643 20 HOH HOH . E 5 HOH A 44 644 13 HOH HOH . E 5 HOH A 45 645 1 HOH HOH . E 5 HOH A 46 646 122 HOH HOH . E 5 HOH A 47 647 55 HOH HOH . E 5 HOH A 48 648 3 HOH HOH . E 5 HOH A 49 649 2 HOH HOH . E 5 HOH A 50 650 32 HOH HOH . E 5 HOH A 51 651 132 HOH HOH . E 5 HOH A 52 652 28 HOH HOH . E 5 HOH A 53 653 82 HOH HOH . E 5 HOH A 54 654 40 HOH HOH . E 5 HOH A 55 655 56 HOH HOH . E 5 HOH A 56 656 101 HOH HOH . E 5 HOH A 57 657 67 HOH HOH . E 5 HOH A 58 658 85 HOH HOH . E 5 HOH A 59 659 133 HOH HOH . E 5 HOH A 60 660 131 HOH HOH . E 5 HOH A 61 661 27 HOH HOH . E 5 HOH A 62 662 97 HOH HOH . E 5 HOH A 63 663 116 HOH HOH . E 5 HOH A 64 664 51 HOH HOH . E 5 HOH A 65 665 25 HOH HOH . E 5 HOH A 66 666 24 HOH HOH . E 5 HOH A 67 667 19 HOH HOH . E 5 HOH A 68 668 7 HOH HOH . E 5 HOH A 69 669 70 HOH HOH . E 5 HOH A 70 670 39 HOH HOH . E 5 HOH A 71 671 100 HOH HOH . E 5 HOH A 72 672 124 HOH HOH . E 5 HOH A 73 673 75 HOH HOH . E 5 HOH A 74 674 22 HOH HOH . E 5 HOH A 75 675 10 HOH HOH . E 5 HOH A 76 676 62 HOH HOH . E 5 HOH A 77 677 114 HOH HOH . E 5 HOH A 78 678 90 HOH HOH . E 5 HOH A 79 679 16 HOH HOH . E 5 HOH A 80 680 8 HOH HOH . E 5 HOH A 81 681 76 HOH HOH . E 5 HOH A 82 682 14 HOH HOH . E 5 HOH A 83 683 71 HOH HOH . E 5 HOH A 84 684 119 HOH HOH . E 5 HOH A 85 685 72 HOH HOH . E 5 HOH A 86 686 64 HOH HOH . E 5 HOH A 87 687 105 HOH HOH . E 5 HOH A 88 688 35 HOH HOH . E 5 HOH A 89 689 95 HOH HOH . E 5 HOH A 90 690 107 HOH HOH . E 5 HOH A 91 691 112 HOH HOH . E 5 HOH A 92 692 52 HOH HOH . E 5 HOH A 93 693 113 HOH HOH . E 5 HOH A 94 694 54 HOH HOH . E 5 HOH A 95 695 44 HOH HOH . E 5 HOH A 96 696 12 HOH HOH . E 5 HOH A 97 697 79 HOH HOH . E 5 HOH A 98 698 87 HOH HOH . E 5 HOH A 99 699 84 HOH HOH . E 5 HOH A 100 700 102 HOH HOH . E 5 HOH A 101 701 110 HOH HOH . E 5 HOH A 102 702 29 HOH HOH . E 5 HOH A 103 703 106 HOH HOH . E 5 HOH A 104 704 21 HOH HOH . E 5 HOH A 105 705 41 HOH HOH . E 5 HOH A 106 706 65 HOH HOH . E 5 HOH A 107 707 130 HOH HOH . E 5 HOH A 108 708 125 HOH HOH . E 5 HOH A 109 709 69 HOH HOH . E 5 HOH A 110 710 96 HOH HOH . E 5 HOH A 111 711 118 HOH HOH . E 5 HOH A 112 712 127 HOH HOH . E 5 HOH A 113 713 88 HOH HOH . E 5 HOH A 114 714 60 HOH HOH . E 5 HOH A 115 715 68 HOH HOH . E 5 HOH A 116 716 63 HOH HOH . E 5 HOH A 117 717 66 HOH HOH . E 5 HOH A 118 718 49 HOH HOH . E 5 HOH A 119 719 94 HOH HOH . E 5 HOH A 120 720 115 HOH HOH . E 5 HOH A 121 721 135 HOH HOH . E 5 HOH A 122 722 80 HOH HOH . E 5 HOH A 123 723 93 HOH HOH . E 5 HOH A 124 724 108 HOH HOH . E 5 HOH A 125 725 128 HOH HOH . E 5 HOH A 126 726 103 HOH HOH . E 5 HOH A 127 727 98 HOH HOH . E 5 HOH A 128 728 92 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . D 4 42.122 11.978 30.115 1 110.53 ? P PO4 503 A 1 HETATM 2 O O1 PO4 . . . D 4 43.133 12.92 29.491 1 106.34 ? O1 PO4 503 A 1 HETATM 3 O O2 PO4 . . . D 4 40.758 12.24 29.516 1 112.89 ? O2 PO4 503 A 1 HETATM 4 O O3 PO4 . . . D 4 42.523 10.551 29.822 1 110.11 ? O3 PO4 503 A 1 HETATM 5 O O4 PO4 . . . D 4 42.067 12.192 31.611 1 95.36 ? O4 PO4 503 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #