data_6HDT
#
_model_server_result.job_id            A3gHaCBvTIgxsMU02fNoyw 
_model_server_result.datetime_utc      '2024-11-07 19:39:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6hdt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":201}' 
#
_entry.id    6HDT 
#
_exptl.entry_id    6HDT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              244.311 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            BIOTIN 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.25 
_cell.angle_gamma         90 
_cell.entry_id            6HDT 
_cell.length_a            42.131 
_cell.length_b            65.218 
_cell.length_c            67.738 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6HDT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,G,I,K 1 1 
B,D,F,H,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 54 A CYS 52 1_555 A SG CYS 83 A CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? 
disulf ? disulf2 B SG CYS 54 B CYS 52 1_555 B SG CYS 83 B CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
disulf ? disulf3 C SG CYS 54 C CYS 52 1_555 C SG CYS 83 C CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
disulf ? disulf4 D SG CYS 54 D CYS 52 1_555 D SG CYS 83 D CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
#
_chem_comp.formula           'C10 H16 N2 O3 S' 
_chem_comp.formula_weight    244.311 
_chem_comp.id                BTN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              BIOTIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C11 O11 BTN doub 70 n n 
C11 O12 BTN sing 71 n n 
C11 C10 BTN sing 72 n n 
O12 HO2 BTN sing 73 n n 
C10 C9 BTN sing 74 n n 
C10 H101 BTN sing 75 n n 
C10 H102 BTN sing 76 n n 
C9 C8 BTN sing 77 n n 
C9 H91 BTN sing 78 n n 
C9 H92 BTN sing 79 n n 
C8 C7 BTN sing 80 n n 
C8 H81 BTN sing 81 n n 
C8 H82 BTN sing 82 n n 
C7 C2 BTN sing 83 n n 
C7 H71 BTN sing 84 n n 
C7 H72 BTN sing 85 n n 
C2 S1 BTN sing 86 n n 
C2 C4 BTN sing 87 n n 
C2 H2 BTN sing 88 n n 
S1 C6 BTN sing 89 n n 
C6 C5 BTN sing 90 n n 
C6 H61 BTN sing 91 n n 
C6 H62 BTN sing 92 n n 
C5 N1 BTN sing 93 n n 
C5 C4 BTN sing 94 n n 
C5 H5 BTN sing 95 n n 
N1 C3 BTN sing 96 n n 
N1 HN1 BTN sing 97 n n 
C3 O3 BTN doub 98 n n 
C3 N2 BTN sing 99 n n 
N2 C4 BTN sing 100 n n 
N2 HN2 BTN sing 101 n n 
C4 H4 BTN sing 102 n n 
#
_atom_sites.entry_id                     6HDT 
_atom_sites.fract_transf_matrix[1][1]    0.023735 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004294 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015333 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015002 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 BTN A 1 201 1 BTN BTN . 
F 2 BTN B 1 201 2 BTN BTN . 
G 2 BTN C 1 201 3 BTN BTN . 
H 2 BTN D 1 201 4 BTN BTN . 
I 3 HOH A 1 301 51 HOH HOH . 
I 3 HOH A 2 302 36 HOH HOH . 
I 3 HOH A 3 303 91 HOH HOH . 
I 3 HOH A 4 304 49 HOH HOH . 
I 3 HOH A 5 305 117 HOH HOH . 
I 3 HOH A 6 306 32 HOH HOH . 
I 3 HOH A 7 307 118 HOH HOH . 
I 3 HOH A 8 308 70 HOH HOH . 
I 3 HOH A 9 309 16 HOH HOH . 
I 3 HOH A 10 310 8 HOH HOH . 
I 3 HOH A 11 311 12 HOH HOH . 
I 3 HOH A 12 312 5 HOH HOH . 
I 3 HOH A 13 313 34 HOH HOH . 
I 3 HOH A 14 314 18 HOH HOH . 
I 3 HOH A 15 315 29 HOH HOH . 
I 3 HOH A 16 316 35 HOH HOH . 
I 3 HOH A 17 317 102 HOH HOH . 
I 3 HOH A 18 318 30 HOH HOH . 
I 3 HOH A 19 319 28 HOH HOH . 
I 3 HOH A 20 320 60 HOH HOH . 
I 3 HOH A 21 321 24 HOH HOH . 
I 3 HOH A 22 322 4 HOH HOH . 
I 3 HOH A 23 323 94 HOH HOH . 
I 3 HOH A 24 324 110 HOH HOH . 
I 3 HOH A 25 325 23 HOH HOH . 
I 3 HOH A 26 326 61 HOH HOH . 
I 3 HOH A 27 327 112 HOH HOH . 
I 3 HOH A 28 328 75 HOH HOH . 
I 3 HOH A 29 329 68 HOH HOH . 
I 3 HOH A 30 330 119 HOH HOH . 
I 3 HOH A 31 331 31 HOH HOH . 
J 3 HOH B 1 301 42 HOH HOH . 
J 3 HOH B 2 302 50 HOH HOH . 
J 3 HOH B 3 303 90 HOH HOH . 
J 3 HOH B 4 304 58 HOH HOH . 
J 3 HOH B 5 305 26 HOH HOH . 
J 3 HOH B 6 306 33 HOH HOH . 
J 3 HOH B 7 307 15 HOH HOH . 
J 3 HOH B 8 308 56 HOH HOH . 
J 3 HOH B 9 309 52 HOH HOH . 
J 3 HOH B 10 310 10 HOH HOH . 
J 3 HOH B 11 311 55 HOH HOH . 
J 3 HOH B 12 312 92 HOH HOH . 
J 3 HOH B 13 313 40 HOH HOH . 
J 3 HOH B 14 314 17 HOH HOH . 
J 3 HOH B 15 315 69 HOH HOH . 
J 3 HOH B 16 316 79 HOH HOH . 
J 3 HOH B 17 317 9 HOH HOH . 
J 3 HOH B 18 318 87 HOH HOH . 
J 3 HOH B 19 319 45 HOH HOH . 
J 3 HOH B 20 320 72 HOH HOH . 
J 3 HOH B 21 321 25 HOH HOH . 
J 3 HOH B 22 322 85 HOH HOH . 
J 3 HOH B 23 323 84 HOH HOH . 
J 3 HOH B 24 324 82 HOH HOH . 
J 3 HOH B 25 325 54 HOH HOH . 
J 3 HOH B 26 326 2 HOH HOH . 
J 3 HOH B 27 327 7 HOH HOH . 
J 3 HOH B 28 328 47 HOH HOH . 
J 3 HOH B 29 329 100 HOH HOH . 
K 3 HOH C 1 301 63 HOH HOH . 
K 3 HOH C 2 302 62 HOH HOH . 
K 3 HOH C 3 303 114 HOH HOH . 
K 3 HOH C 4 304 74 HOH HOH . 
K 3 HOH C 5 305 73 HOH HOH . 
K 3 HOH C 6 306 20 HOH HOH . 
K 3 HOH C 7 307 39 HOH HOH . 
K 3 HOH C 8 308 37 HOH HOH . 
K 3 HOH C 9 309 13 HOH HOH . 
K 3 HOH C 10 310 22 HOH HOH . 
K 3 HOH C 11 311 41 HOH HOH . 
K 3 HOH C 12 312 66 HOH HOH . 
K 3 HOH C 13 313 3 HOH HOH . 
K 3 HOH C 14 314 115 HOH HOH . 
K 3 HOH C 15 315 99 HOH HOH . 
K 3 HOH C 16 316 44 HOH HOH . 
K 3 HOH C 17 317 57 HOH HOH . 
K 3 HOH C 18 318 76 HOH HOH . 
K 3 HOH C 19 319 101 HOH HOH . 
K 3 HOH C 20 320 108 HOH HOH . 
K 3 HOH C 21 321 77 HOH HOH . 
K 3 HOH C 22 322 46 HOH HOH . 
K 3 HOH C 23 323 11 HOH HOH . 
K 3 HOH C 24 324 1 HOH HOH . 
K 3 HOH C 25 325 19 HOH HOH . 
K 3 HOH C 26 326 83 HOH HOH . 
K 3 HOH C 27 327 86 HOH HOH . 
K 3 HOH C 28 328 80 HOH HOH . 
K 3 HOH C 29 329 65 HOH HOH . 
K 3 HOH C 30 330 104 HOH HOH . 
K 3 HOH C 31 331 96 HOH HOH . 
K 3 HOH C 32 332 107 HOH HOH . 
K 3 HOH C 33 333 93 HOH HOH . 
L 3 HOH D 1 301 27 HOH HOH . 
L 3 HOH D 2 302 106 HOH HOH . 
L 3 HOH D 3 303 67 HOH HOH . 
L 3 HOH D 4 304 98 HOH HOH . 
L 3 HOH D 5 305 88 HOH HOH . 
L 3 HOH D 6 306 6 HOH HOH . 
L 3 HOH D 7 307 21 HOH HOH . 
L 3 HOH D 8 308 14 HOH HOH . 
L 3 HOH D 9 309 59 HOH HOH . 
L 3 HOH D 10 310 43 HOH HOH . 
L 3 HOH D 11 311 89 HOH HOH . 
L 3 HOH D 12 312 71 HOH HOH . 
L 3 HOH D 13 313 64 HOH HOH . 
L 3 HOH D 14 314 103 HOH HOH . 
L 3 HOH D 15 315 48 HOH HOH . 
L 3 HOH D 16 316 109 HOH HOH . 
L 3 HOH D 17 317 97 HOH HOH . 
L 3 HOH D 18 318 116 HOH HOH . 
L 3 HOH D 19 319 38 HOH HOH . 
L 3 HOH D 20 320 105 HOH HOH . 
L 3 HOH D 21 321 95 HOH HOH . 
L 3 HOH D 22 322 78 HOH HOH . 
L 3 HOH D 23 323 111 HOH HOH . 
L 3 HOH D 24 324 81 HOH HOH . 
L 3 HOH D 25 325 120 HOH HOH . 
L 3 HOH D 26 326 122 HOH HOH . 
L 3 HOH D 27 327 121 HOH HOH . 
L 3 HOH D 28 328 113 HOH HOH . 
L 3 HOH D 29 329 53 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C11 BTN . . . F 2 -21.295 4.273 -33.242 1 21.05 ? C11 BTN 201 B 1 
HETATM 2 O O11 BTN . . . F 2 -21.049 3.061 -33.408 1 22.06 ? O11 BTN 201 B 1 
HETATM 3 O O12 BTN . . . F 2 -22.228 4.676 -32.514 1 22.35 ? O12 BTN 201 B 1 
HETATM 4 C C10 BTN . . . F 2 -20.456 5.306 -33.945 1 18.77 ? C10 BTN 201 B 1 
HETATM 5 C C9 BTN . . . F 2 -19.002 4.805 -34.081 1 19.42 ? C9 BTN 201 B 1 
HETATM 6 C C8 BTN . . . F 2 -18.29 4.754 -32.723 1 21.55 ? C8 BTN 201 B 1 
HETATM 7 C C7 BTN . . . F 2 -16.825 4.274 -32.791 1 20.1 ? C7 BTN 201 B 1 
HETATM 8 C C2 BTN . . . F 2 -16.237 4.254 -31.371 1 18.33 ? C2 BTN 201 B 1 
HETATM 9 S S1 BTN . . . F 2 -15.76 5.871 -30.78 1 18.98 ? S1 BTN 201 B 1 
HETATM 10 C C6 BTN . . . F 2 -14.776 5.16 -29.489 1 20.38 ? C6 BTN 201 B 1 
HETATM 11 C C5 BTN . . . F 2 -14.111 3.917 -30.048 1 17.78 ? C5 BTN 201 B 1 
HETATM 12 N N1 BTN . . . F 2 -12.831 4.227 -30.631 1 18.26 ? N1 BTN 201 B 1 
HETATM 13 C C3 BTN . . . F 2 -12.817 4.028 -31.94 1 16.74 ? C3 BTN 201 B 1 
HETATM 14 O O3 BTN . . . F 2 -11.84 4.178 -32.67 1 19.09 ? O3 BTN 201 B 1 
HETATM 15 N N2 BTN . . . F 2 -14.048 3.597 -32.328 1 15.85 ? N2 BTN 201 B 1 
HETATM 16 C C4 BTN . . . F 2 -14.954 3.42 -31.224 1 17.96 ? C4 BTN 201 B 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           16 
#