data_6HE0 # _model_server_result.job_id d5XuoeQDitDcZh_IChg03Q _model_server_result.datetime_utc '2024-11-23 07:29:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6he0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1002}' # _entry.id 6HE0 # _exptl.entry_id 6HE0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6HE0 _cell.length_a 95.054 _cell.length_b 95.054 _cell.length_c 100.742 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HE0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 64 n n P O2P AMP sing 65 n n P O3P AMP sing 66 n n P O5' AMP sing 67 n n O2P HOP2 AMP sing 68 n n O3P HOP3 AMP sing 69 n n O5' C5' AMP sing 70 n n C5' C4' AMP sing 71 n n C5' "H5'1" AMP sing 72 n n C5' "H5'2" AMP sing 73 n n C4' O4' AMP sing 74 n n C4' C3' AMP sing 75 n n C4' H4' AMP sing 76 n n O4' C1' AMP sing 77 n n C3' O3' AMP sing 78 n n C3' C2' AMP sing 79 n n C3' H3' AMP sing 80 n n O3' HO3' AMP sing 81 n n C2' O2' AMP sing 82 n n C2' C1' AMP sing 83 n n C2' H2' AMP sing 84 n n O2' HO2' AMP sing 85 n n C1' N9 AMP sing 86 n n C1' H1' AMP sing 87 n n N9 C8 AMP sing 88 n y N9 C4 AMP sing 89 n y C8 N7 AMP doub 90 n y C8 H8 AMP sing 91 n n N7 C5 AMP sing 92 n y C5 C6 AMP sing 93 n y C5 C4 AMP doub 94 n y C6 N6 AMP sing 95 n n C6 N1 AMP doub 96 n y N6 HN61 AMP sing 97 n n N6 HN62 AMP sing 98 n n N1 C2 AMP sing 99 n y C2 N3 AMP doub 100 n y C2 H2 AMP sing 101 n n N3 C4 AMP sing 102 n y # _atom_sites.entry_id 6HE0 _atom_sites.fract_transf_matrix[1][1] 0.01052 _atom_sites.fract_transf_matrix[1][2] 0.006074 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012148 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009926 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8LE A 1 1001 1001 8LE 8LE . C 3 AMP A 1 1002 1002 AMP AMP . D 4 COA A 1 1003 1003 COA COA . E 5 HOH A 1 1101 1101 HOH HOH . E 5 HOH A 2 1102 1102 HOH HOH . E 5 HOH A 3 1103 1103 HOH HOH . E 5 HOH A 4 1104 1104 HOH HOH . E 5 HOH A 5 1105 1105 HOH HOH . E 5 HOH A 6 1106 1106 HOH HOH . E 5 HOH A 7 1107 1107 HOH HOH . E 5 HOH A 8 1108 1108 HOH HOH . E 5 HOH A 9 1109 1109 HOH HOH . E 5 HOH A 10 1110 1110 HOH HOH . E 5 HOH A 11 1111 1111 HOH HOH . E 5 HOH A 12 1112 1112 HOH HOH . E 5 HOH A 13 1113 1113 HOH HOH . E 5 HOH A 14 1114 1114 HOH HOH . E 5 HOH A 15 1115 1115 HOH HOH . E 5 HOH A 16 1116 1116 HOH HOH . E 5 HOH A 17 1117 1117 HOH HOH . E 5 HOH A 18 1118 1118 HOH HOH . E 5 HOH A 19 1119 1119 HOH HOH . E 5 HOH A 20 1120 1120 HOH HOH . E 5 HOH A 21 1121 1121 HOH HOH . E 5 HOH A 22 1122 1122 HOH HOH . E 5 HOH A 23 1123 1123 HOH HOH . E 5 HOH A 24 1124 1124 HOH HOH . E 5 HOH A 25 1125 1125 HOH HOH . E 5 HOH A 26 1126 1126 HOH HOH . E 5 HOH A 27 1127 1127 HOH HOH . E 5 HOH A 28 1128 1128 HOH HOH . E 5 HOH A 29 1129 1129 HOH HOH . E 5 HOH A 30 1130 1130 HOH HOH . E 5 HOH A 31 1131 1131 HOH HOH . E 5 HOH A 32 1132 1132 HOH HOH . E 5 HOH A 33 1133 1133 HOH HOH . E 5 HOH A 34 1134 1134 HOH HOH . E 5 HOH A 35 1135 1135 HOH HOH . E 5 HOH A 36 1136 1136 HOH HOH . E 5 HOH A 37 1137 1137 HOH HOH . E 5 HOH A 38 1138 1138 HOH HOH . E 5 HOH A 39 1139 1139 HOH HOH . E 5 HOH A 40 1140 1140 HOH HOH . E 5 HOH A 41 1141 1141 HOH HOH . E 5 HOH A 42 1142 1142 HOH HOH . E 5 HOH A 43 1143 1143 HOH HOH . E 5 HOH A 44 1144 1144 HOH HOH . E 5 HOH A 45 1145 1145 HOH HOH . E 5 HOH A 46 1146 1146 HOH HOH . E 5 HOH A 47 1147 1147 HOH HOH . E 5 HOH A 48 1148 1148 HOH HOH . E 5 HOH A 49 1149 1149 HOH HOH . E 5 HOH A 50 1150 1150 HOH HOH . E 5 HOH A 51 1151 1151 HOH HOH . E 5 HOH A 52 1152 1152 HOH HOH . E 5 HOH A 53 1153 1153 HOH HOH . E 5 HOH A 54 1154 1154 HOH HOH . E 5 HOH A 55 1155 1155 HOH HOH . E 5 HOH A 56 1156 1156 HOH HOH . E 5 HOH A 57 1157 1157 HOH HOH . E 5 HOH A 58 1158 1158 HOH HOH . E 5 HOH A 59 1159 1159 HOH HOH . E 5 HOH A 60 1160 1160 HOH HOH . E 5 HOH A 61 1161 1161 HOH HOH . E 5 HOH A 62 1162 1162 HOH HOH . E 5 HOH A 63 1163 1163 HOH HOH . E 5 HOH A 64 1164 1164 HOH HOH . E 5 HOH A 65 1165 1165 HOH HOH . E 5 HOH A 66 1166 1166 HOH HOH . E 5 HOH A 67 1167 1167 HOH HOH . E 5 HOH A 68 1168 1168 HOH HOH . E 5 HOH A 69 1169 1169 HOH HOH . E 5 HOH A 70 1170 1170 HOH HOH . E 5 HOH A 71 1171 1171 HOH HOH . E 5 HOH A 72 1172 1172 HOH HOH . E 5 HOH A 73 1173 1173 HOH HOH . E 5 HOH A 74 1174 1174 HOH HOH . E 5 HOH A 75 1175 1175 HOH HOH . E 5 HOH A 76 1176 1176 HOH HOH . E 5 HOH A 77 1177 1177 HOH HOH . E 5 HOH A 78 1178 1178 HOH HOH . E 5 HOH A 79 1179 1179 HOH HOH . E 5 HOH A 80 1180 1180 HOH HOH . E 5 HOH A 81 1181 1181 HOH HOH . E 5 HOH A 82 1182 1182 HOH HOH . E 5 HOH A 83 1183 1183 HOH HOH . E 5 HOH A 84 1184 1184 HOH HOH . E 5 HOH A 85 1185 1185 HOH HOH . E 5 HOH A 86 1186 1186 HOH HOH . E 5 HOH A 87 1187 1187 HOH HOH . E 5 HOH A 88 1188 1188 HOH HOH . E 5 HOH A 89 1189 1189 HOH HOH . E 5 HOH A 90 1190 1190 HOH HOH . E 5 HOH A 91 1191 1191 HOH HOH . E 5 HOH A 92 1192 1192 HOH HOH . E 5 HOH A 93 1193 1193 HOH HOH . E 5 HOH A 94 1194 1194 HOH HOH . E 5 HOH A 95 1195 1195 HOH HOH . E 5 HOH A 96 1196 1196 HOH HOH . E 5 HOH A 97 1197 1197 HOH HOH . E 5 HOH A 98 1198 1198 HOH HOH . E 5 HOH A 99 1199 1199 HOH HOH . E 5 HOH A 100 1200 1200 HOH HOH . E 5 HOH A 101 1201 1201 HOH HOH . E 5 HOH A 102 1202 1202 HOH HOH . E 5 HOH A 103 1203 1203 HOH HOH . E 5 HOH A 104 1204 1204 HOH HOH . E 5 HOH A 105 1205 1205 HOH HOH . E 5 HOH A 106 1206 1206 HOH HOH . E 5 HOH A 107 1207 1207 HOH HOH . E 5 HOH A 108 1208 1208 HOH HOH . E 5 HOH A 109 1209 1209 HOH HOH . E 5 HOH A 110 1210 1210 HOH HOH . E 5 HOH A 111 1211 1211 HOH HOH . E 5 HOH A 112 1212 1212 HOH HOH . E 5 HOH A 113 1213 1213 HOH HOH . E 5 HOH A 114 1214 1214 HOH HOH . E 5 HOH A 115 1215 1215 HOH HOH . E 5 HOH A 116 1216 1216 HOH HOH . E 5 HOH A 117 1217 1217 HOH HOH . E 5 HOH A 118 1218 1218 HOH HOH . E 5 HOH A 119 1219 1219 HOH HOH . E 5 HOH A 120 1220 1220 HOH HOH . E 5 HOH A 121 1221 1221 HOH HOH . E 5 HOH A 122 1222 1222 HOH HOH . E 5 HOH A 123 1223 1223 HOH HOH . E 5 HOH A 124 1224 1224 HOH HOH . E 5 HOH A 125 1225 1225 HOH HOH . E 5 HOH A 126 1226 1226 HOH HOH . E 5 HOH A 127 1227 1227 HOH HOH . E 5 HOH A 128 1228 1228 HOH HOH . E 5 HOH A 129 1229 1229 HOH HOH . E 5 HOH A 130 1230 1230 HOH HOH . E 5 HOH A 131 1231 1231 HOH HOH . E 5 HOH A 132 1232 1232 HOH HOH . E 5 HOH A 133 1233 1233 HOH HOH . E 5 HOH A 134 1234 1234 HOH HOH . E 5 HOH A 135 1235 1235 HOH HOH . E 5 HOH A 136 1236 1236 HOH HOH . E 5 HOH A 137 1237 1237 HOH HOH . E 5 HOH A 138 1238 1238 HOH HOH . E 5 HOH A 139 1239 1239 HOH HOH . E 5 HOH A 140 1240 1240 HOH HOH . E 5 HOH A 141 1241 1241 HOH HOH . E 5 HOH A 142 1242 1242 HOH HOH . E 5 HOH A 143 1243 1243 HOH HOH . E 5 HOH A 144 1244 1244 HOH HOH . E 5 HOH A 145 1245 1245 HOH HOH . E 5 HOH A 146 1246 1246 HOH HOH . E 5 HOH A 147 1247 1247 HOH HOH . E 5 HOH A 148 1248 1248 HOH HOH . E 5 HOH A 149 1249 1249 HOH HOH . E 5 HOH A 150 1250 1250 HOH HOH . E 5 HOH A 151 1251 1251 HOH HOH . E 5 HOH A 152 1252 1252 HOH HOH . E 5 HOH A 153 1253 1253 HOH HOH . E 5 HOH A 154 1254 1254 HOH HOH . E 5 HOH A 155 1255 1255 HOH HOH . E 5 HOH A 156 1256 1256 HOH HOH . E 5 HOH A 157 1257 1257 HOH HOH . E 5 HOH A 158 1258 1258 HOH HOH . E 5 HOH A 159 1259 1259 HOH HOH . E 5 HOH A 160 1260 1260 HOH HOH . E 5 HOH A 161 1261 1261 HOH HOH . E 5 HOH A 162 1262 1262 HOH HOH . E 5 HOH A 163 1263 1263 HOH HOH . E 5 HOH A 164 1264 1264 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . B . C 3 20.07 37.504 17.67 0.39 21.81 ? P AMP 1002 A 1 HETATM 2 O O1P AMP . B . C 3 19.095 36.772 16.746 0.39 22.02 ? O1P AMP 1002 A 1 HETATM 3 O O2P AMP . B . C 3 21.27 37.937 16.974 0.39 22.74 ? O2P AMP 1002 A 1 HETATM 4 O O3P AMP . B . C 3 20.315 36.635 18.947 0.39 15.79 ? O3P AMP 1002 A 1 HETATM 5 O O5' AMP . B . C 3 19.249 38.803 18.198 0.39 28.78 ? O5' AMP 1002 A 1 HETATM 6 C C5' AMP . B . C 3 17.889 38.725 18.675 0.39 32.17 ? C5' AMP 1002 A 1 HETATM 7 C C4' AMP . B . C 3 17.582 39.972 19.462 0.39 29.2 ? C4' AMP 1002 A 1 HETATM 8 O O4' AMP . B . C 3 17.132 41.027 18.579 0.39 29.85 ? O4' AMP 1002 A 1 HETATM 9 C C3' AMP . B . C 3 16.469 39.832 20.489 0.39 27.22 ? C3' AMP 1002 A 1 HETATM 10 O O3' AMP . B . C 3 16.948 39.232 21.684 0.39 29.64 ? O3' AMP 1002 A 1 HETATM 11 C C2' AMP . B . C 3 16.008 41.28 20.651 0.39 25.84 ? C2' AMP 1002 A 1 HETATM 12 O O2' AMP . B . C 3 16.883 42.043 21.476 0.39 23.7 ? O2' AMP 1002 A 1 HETATM 13 C C1' AMP . B . C 3 16.098 41.776 19.205 0.39 25.67 ? C1' AMP 1002 A 1 HETATM 14 N N9 AMP . B . C 3 14.855 41.608 18.45 0.39 22.04 ? N9 AMP 1002 A 1 HETATM 15 C C8 AMP . B . C 3 14.609 40.715 17.439 0.39 20.26 ? C8 AMP 1002 A 1 HETATM 16 N N7 AMP . B . C 3 13.391 40.776 16.956 0.39 21.78 ? N7 AMP 1002 A 1 HETATM 17 C C5 AMP . B . C 3 12.79 41.776 17.706 0.39 20.59 ? C5 AMP 1002 A 1 HETATM 18 C C6 AMP . B . C 3 11.485 42.314 17.7 0.39 20.68 ? C6 AMP 1002 A 1 HETATM 19 N N6 AMP . B . C 3 10.53 41.936 16.848 0.39 19.62 ? N6 AMP 1002 A 1 HETATM 20 N N1 AMP . B . C 3 11.201 43.283 18.602 0.39 19.93 ? N1 AMP 1002 A 1 HETATM 21 C C2 AMP . B . C 3 12.162 43.685 19.442 0.39 19.25 ? C2 AMP 1002 A 1 HETATM 22 N N3 AMP . B . C 3 13.428 43.266 19.528 0.39 20.61 ? N3 AMP 1002 A 1 HETATM 23 C C4 AMP . B . C 3 13.68 42.298 18.63 0.39 19.57 ? C4 AMP 1002 A 1 # _model_server_stats.io_time_ms 38 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 23 #