data_6HE4 # _model_server_result.job_id ckYT6QgATQPifyep_M9VFw _model_server_result.datetime_utc '2024-11-08 01:52:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6he4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":401}' # _entry.id 6HE4 # _exptl.entry_id 6HE4 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6HE4 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HE4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 I N N ? 2 K N N ? 2 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 67 H THR 189 1_555 H MG MG . H MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? metalc ? metalc2 G O2G ATP . H ATP 401 1_555 H MG MG . H MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc3 G O2B ATP . H ATP 401 1_555 H MG MG . H MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc4 G O3B ATP . H ATP 401 1_555 H MG MG . H MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? metalc ? metalc5 I O2G ATP . I ATP 401 1_555 J MG MG . I MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc6 I O2B ATP . I ATP 401 1_555 J MG MG . I MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc7 I O3B ATP . I ATP 401 1_555 J MG MG . I MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc8 K O2G ATP . K ATP 401 1_555 L MG MG . K MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc9 K O2B ATP . K ATP 401 1_555 L MG MG . K MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc10 K O3B ATP . K ATP 401 1_555 L MG MG . K MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.884 ? metalc ? metalc11 D OG1 THR 67 L THR 189 1_555 N MG MG . L MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.918 ? metalc ? metalc12 M O3B ADP . L ADP 401 1_555 N MG MG . L MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.87 ? metalc ? metalc13 F OG1 THR 67 J THR 189 1_555 P MG MG . J MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.694 ? metalc ? metalc14 O O2G ATP . J ATP 401 1_555 P MG MG . J MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc15 O O2B ATP . J ATP 401 1_555 P MG MG . J MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc16 O O3B ATP . J ATP 401 1_555 P MG MG . J MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.934 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 6HE4 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 ATP H 1 401 439 ATP ATP . H 3 MG H 1 402 601 MG MG . I 2 ATP I 1 401 439 ATP ATP . J 3 MG I 1 402 601 MG MG . K 2 ATP K 1 401 439 ATP ATP . L 3 MG K 1 402 601 MG MG . M 4 ADP L 1 401 439 ADP ADP . N 3 MG L 1 402 601 MG MG . O 2 ATP J 1 401 439 ATP ATP . P 3 MG J 1 402 601 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . I 2 239.472 238.039 368.388 1 1 ? PG ATP 401 I 1 HETATM 2 O O1G ATP . . . I 2 240.208 238.371 367.061 1 1 ? O1G ATP 401 I 1 HETATM 3 O O2G ATP . . . I 2 240.252 237.866 369.606 1 1 ? O2G ATP 401 I 1 HETATM 4 O O3G ATP . . . I 2 238.193 238.857 368.468 1 1 ? O3G ATP 401 I 1 HETATM 5 P PB ATP . . . I 2 239.032 234.6 368.246 1 1 ? PB ATP 401 I 1 HETATM 6 O O1B ATP . . . I 2 239.01 233.998 366.835 1 1 ? O1B ATP 401 I 1 HETATM 7 O O2B ATP . . . I 2 240.071 234.168 369.293 1 1 ? O2B ATP 401 I 1 HETATM 8 O O3B ATP . . . I 2 238.934 236.394 368.231 1 1 ? O3B ATP 401 I 1 HETATM 9 P PA ATP . . . I 2 236.794 233.095 369.719 1 1 ? PA ATP 401 I 1 HETATM 10 O O1A ATP . . . I 2 237.838 232.032 369.969 1 1 ? O1A ATP 401 I 1 HETATM 11 O O2A ATP . . . I 2 235.875 233.517 370.787 1 1 ? O2A ATP 401 I 1 HETATM 12 O O3A ATP . . . I 2 237.574 234.333 369.11 1 1 ? O3A ATP 401 I 1 HETATM 13 O O5' ATP . . . I 2 235.869 232.453 368.654 1 1 ? O5' ATP 401 I 1 HETATM 14 C C5' ATP . . . I 2 235.11 233.353 367.767 1 1 ? C5' ATP 401 I 1 HETATM 15 C C4' ATP . . . I 2 233.822 232.621 367.28 1 1 ? C4' ATP 401 I 1 HETATM 16 O O4' ATP . . . I 2 234.006 231.695 366.182 1 1 ? O4' ATP 401 I 1 HETATM 17 C C3' ATP . . . I 2 233.075 231.843 368.37 1 1 ? C3' ATP 401 I 1 HETATM 18 O O3' ATP . . . I 2 231.663 232.173 368.355 1 1 ? O3' ATP 401 I 1 HETATM 19 C C2' ATP . . . I 2 233.418 230.388 368.052 1 1 ? C2' ATP 401 I 1 HETATM 20 O O2' ATP . . . I 2 232.461 229.492 368.611 1 1 ? O2' ATP 401 I 1 HETATM 21 C C1' ATP . . . I 2 233.515 230.378 366.541 1 1 ? C1' ATP 401 I 1 HETATM 22 N N9 ATP . . . I 2 234.403 229.388 365.984 1 1 ? N9 ATP 401 I 1 HETATM 23 C C8 ATP . . . I 2 235.688 229.577 365.664 1 1 ? C8 ATP 401 I 1 HETATM 24 N N7 ATP . . . I 2 236.27 228.502 365.156 1 1 ? N7 ATP 401 I 1 HETATM 25 C C5 ATP . . . I 2 235.294 227.594 365.018 1 1 ? C5 ATP 401 I 1 HETATM 26 C C6 ATP . . . I 2 235.304 226.309 364.484 1 1 ? C6 ATP 401 I 1 HETATM 27 N N6 ATP . . . I 2 236.387 225.842 363.845 1 1 ? N6 ATP 401 I 1 HETATM 28 N N1 ATP . . . I 2 234.111 225.643 364.6 1 1 ? N1 ATP 401 I 1 HETATM 29 C C2 ATP . . . I 2 233.044 226.236 365.149 1 1 ? C2 ATP 401 I 1 HETATM 30 N N3 ATP . . . I 2 232.945 227.504 365.682 1 1 ? N3 ATP 401 I 1 HETATM 31 C C4 ATP . . . I 2 234.134 228.129 365.57 1 1 ? C4 ATP 401 I 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #