data_6HEF # _model_server_result.job_id XhxPk7f5ta3s6tCDuP1BUg _model_server_result.datetime_utc '2024-11-23 20:53:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hef # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1006}' # _entry.id 6HEF # _exptl.entry_id 6HEF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 787.121 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.28 _cell.angle_gamma 90 _cell.entry_id 6HEF _cell.length_a 165.84 _cell.length_b 77.77 _cell.length_c 152.22 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HEF _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O VAL 304 A VAL 304 1_555 D CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.888 ? metalc ? metalc2 A O ALA 305 A ALA 305 1_555 D CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc3 A O ILE 307 A ILE 307 1_555 D CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? metalc ? metalc4 A OE1 GLU 309 A GLU 309 1_555 D CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc5 A OD2 ASP 351 A ASP 351 1_555 C CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc6 A O THR 353 A THR 353 1_555 C CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc7 A OD1 ASP 703 A ASP 703 1_555 C CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? metalc ? metalc8 A O LYS 712 A LYS 712 1_555 F K K . A K 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.147 ? metalc ? metalc9 A OD1 ASN 768 A ASN 768 1_555 E CA CA . A CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.905 ? metalc ? metalc10 A OE2 GLU 771 A GLU 771 1_555 E CA CA . A CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc11 A OD1 ASN 796 A ASN 796 1_555 D CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc12 A OG1 THR 799 A THR 799 1_555 E CA CA . A CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc13 A OD2 ASP 800 A ASP 800 1_555 D CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc14 A OD1 ASP 800 A ASP 800 1_555 E CA CA . A CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc15 A OD2 ASP 800 A ASP 800 1_555 E CA CA . A CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.168 ? metalc ? metalc16 A OE1 GLU 908 A GLU 908 1_555 E CA CA . A CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc17 B O2G ACP . A ACP 1001 1_555 C CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? # _chem_comp.formula 'C44 H85 N O8 P 1' _chem_comp.formula_weight 787.121 _chem_comp.id PCW _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (Z,Z)-4-HYDROXY-N,N,N-TRIMETHYL-10-OXO-7-[(1-OXO-9-OCTADECENYL)OXY]-3,5,9-TRIOXA-4-PHOSPHAHEPTACOS-18-EN-1-AMINIUM-4-OXIDE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PCW sing 286 n n C1 O3P PCW sing 287 n n C1 H11 PCW sing 288 n n C1 H12 PCW sing 289 n n C2 C3 PCW sing 290 n n C2 O2 PCW sing 291 n n C2 H2 PCW sing 292 n n C3 O3 PCW sing 293 n n C3 H31 PCW sing 294 n n C3 H32 PCW sing 295 n n C4 C5 PCW sing 296 n n C4 O4P PCW sing 297 n n C4 H41 PCW sing 298 n n C4 H42 PCW sing 299 n n C5 N PCW sing 300 n n C5 H51 PCW sing 301 n n C5 H52 PCW sing 302 n n C6 N PCW sing 303 n n C6 H61 PCW sing 304 n n C6 H62 PCW sing 305 n n C6 H63 PCW sing 306 n n C7 N PCW sing 307 n n C7 H71 PCW sing 308 n n C7 H72 PCW sing 309 n n C7 H73 PCW sing 310 n n C8 N PCW sing 311 n n C8 H81 PCW sing 312 n n C8 H82 PCW sing 313 n n C8 H83 PCW sing 314 n n C11 C12 PCW sing 315 n n C11 O3 PCW sing 316 n n C11 O11 PCW doub 317 n n C12 C13 PCW sing 318 n n C12 H121 PCW sing 319 n n C12 H122 PCW sing 320 n n C13 C14 PCW sing 321 n n C13 H131 PCW sing 322 n n C13 H132 PCW sing 323 n n C14 C15 PCW sing 324 n n C14 H141 PCW sing 325 n n C14 H142 PCW sing 326 n n C15 C16 PCW sing 327 n n C15 H151 PCW sing 328 n n C15 H152 PCW sing 329 n n C16 C17 PCW sing 330 n n C16 H161 PCW sing 331 n n C16 H162 PCW sing 332 n n C17 C18 PCW sing 333 n n C17 H171 PCW sing 334 n n C17 H172 PCW sing 335 n n C18 C19 PCW sing 336 n n C18 H181 PCW sing 337 n n C18 H182 PCW sing 338 n n C19 C20 PCW doub 339 z n C19 H19 PCW sing 340 n n C20 C21 PCW sing 341 n n C20 H20 PCW sing 342 n n C21 C22 PCW sing 343 n n C21 H211 PCW sing 344 n n C21 H212 PCW sing 345 n n C22 C23 PCW sing 346 n n C22 H221 PCW sing 347 n n C22 H222 PCW sing 348 n n C23 C24 PCW sing 349 n n C23 H231 PCW sing 350 n n C23 H232 PCW sing 351 n n C24 C25 PCW sing 352 n n C24 H241 PCW sing 353 n n C24 H242 PCW sing 354 n n C25 C26 PCW sing 355 n n C25 H251 PCW sing 356 n n C25 H252 PCW sing 357 n n C26 C27 PCW sing 358 n n C26 H261 PCW sing 359 n n C26 H262 PCW sing 360 n n C27 C28 PCW sing 361 n n C27 H271 PCW sing 362 n n C27 H272 PCW sing 363 n n C28 H281 PCW sing 364 n n C28 H282 PCW sing 365 n n C28 H283 PCW sing 366 n n C31 C32 PCW sing 367 n n C31 O2 PCW sing 368 n n C31 O31 PCW doub 369 n n C32 C33 PCW sing 370 n n C32 H321 PCW sing 371 n n C32 H322 PCW sing 372 n n C33 C34 PCW sing 373 n n C33 H331 PCW sing 374 n n C33 H332 PCW sing 375 n n C34 C35 PCW sing 376 n n C34 H341 PCW sing 377 n n C34 H342 PCW sing 378 n n C35 C36 PCW sing 379 n n C35 H351 PCW sing 380 n n C35 H352 PCW sing 381 n n C36 C37 PCW sing 382 n n C36 H361 PCW sing 383 n n C36 H362 PCW sing 384 n n C37 C38 PCW sing 385 n n C37 H371 PCW sing 386 n n C37 H372 PCW sing 387 n n C38 C39 PCW sing 388 n n C38 H381 PCW sing 389 n n C38 H382 PCW sing 390 n n C39 C40 PCW doub 391 z n C39 H39 PCW sing 392 n n C40 C41 PCW sing 393 n n C40 H40 PCW sing 394 n n C41 C42 PCW sing 395 n n C41 H411 PCW sing 396 n n C41 H412 PCW sing 397 n n C42 C43 PCW sing 398 n n C42 H421 PCW sing 399 n n C42 H422 PCW sing 400 n n C43 C44 PCW sing 401 n n C43 H431 PCW sing 402 n n C43 H432 PCW sing 403 n n C44 C45 PCW sing 404 n n C44 H441 PCW sing 405 n n C44 H442 PCW sing 406 n n C45 C46 PCW sing 407 n n C45 H451 PCW sing 408 n n C45 H452 PCW sing 409 n n C46 C47 PCW sing 410 n n C46 H461 PCW sing 411 n n C46 H462 PCW sing 412 n n C47 C48 PCW sing 413 n n C47 H471 PCW sing 414 n n C47 H472 PCW sing 415 n n C48 H481 PCW sing 416 n n C48 H482 PCW sing 417 n n C48 H483 PCW sing 418 n n O1P P PCW sing 419 n n O1P H1P PCW sing 420 n n O2P P PCW doub 421 n n O3P P PCW sing 422 n n O4P P PCW sing 423 n n # _atom_sites.entry_id 6HEF _atom_sites.fract_transf_matrix[1][1] 0.00603 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002109 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012858 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00696 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACP A 1 1001 1001 ACP ACP . C 3 CA A 1 1002 1101 CA CA . D 3 CA A 1 1003 1201 CA CA . E 3 CA A 1 1004 1202 CA CA . F 4 K A 1 1005 1301 K K . G 5 PCW A 1 1006 1501 PCW PCW . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PCW . . . G 5 -23.781 1.516 56.886 1 101.02 ? C1 PCW 1006 A 1 HETATM 2 C C2 PCW . . . G 5 -22.778 0.608 57.62 1 99.22 ? C2 PCW 1006 A 1 HETATM 3 C C3 PCW . . . G 5 -21.971 1.462 58.587 1 101.19 ? C3 PCW 1006 A 1 HETATM 4 C C4 PCW . . . G 5 -24.748 3.449 53.066 1 108.21 ? C4 PCW 1006 A 1 HETATM 5 C C5 PCW . . . G 5 -25.488 4.798 53.116 1 112.45 ? C5 PCW 1006 A 1 HETATM 6 C C6 PCW . . . G 5 -24.134 5.538 51.323 1 114.64 ? C6 PCW 1006 A 1 HETATM 7 C C7 PCW . . . G 5 -25.4 7.069 52.526 1 113.4 ? C7 PCW 1006 A 1 HETATM 8 C C8 PCW . . . G 5 -23.538 6.071 53.514 1 112.91 ? C8 PCW 1006 A 1 HETATM 9 C C11 PCW . . . G 5 -20.051 1.355 59.971 1 104.74 ? C11 PCW 1006 A 1 HETATM 10 C C12 PCW . . . G 5 -19.09 0.615 60.921 1 100.29 ? C12 PCW 1006 A 1 HETATM 11 C C13 PCW . . . G 5 -19.328 1.056 62.375 1 98.64 ? C13 PCW 1006 A 1 HETATM 12 C C14 PCW . . . G 5 -20.732 0.617 62.845 1 100.56 ? C14 PCW 1006 A 1 HETATM 13 C C15 PCW . . . G 5 -21.51 1.856 63.336 1 103.26 ? C15 PCW 1006 A 1 HETATM 14 C C16 PCW . . . G 5 -22.482 1.444 64.471 1 105.8 ? C16 PCW 1006 A 1 HETATM 15 C C17 PCW . . . G 5 -23.238 2.697 64.971 1 106.54 ? C17 PCW 1006 A 1 HETATM 16 C C18 PCW . . . G 5 -24.484 2.256 65.77 1 106.61 ? C18 PCW 1006 A 1 HETATM 17 C C19 PCW . . . G 5 -24.102 2.147 67.253 1 105.93 ? C19 PCW 1006 A 1 HETATM 18 C C20 PCW . . . G 5 -25.036 2.153 68.19 1 105.73 ? C20 PCW 1006 A 1 HETATM 19 C C21 PCW . . . G 5 -24.634 2.045 69.669 1 107.19 ? C21 PCW 1006 A 1 HETATM 20 C C22 PCW . . . G 5 -23.554 3.096 69.988 1 110.94 ? C22 PCW 1006 A 1 HETATM 21 C C23 PCW . . . G 5 -23.467 3.333 71.515 1 116.04 ? C23 PCW 1006 A 1 HETATM 22 C C24 PCW . . . G 5 -23.312 4.848 71.797 1 120.59 ? C24 PCW 1006 A 1 HETATM 23 C C25 PCW . . . G 5 -23.851 5.208 73.197 0.5 123.34 ? C25 PCW 1006 A 1 HETATM 24 C C26 PCW . . . G 5 -24.097 6.719 73.292 1 125.76 ? C26 PCW 1006 A 1 HETATM 25 C C27 PCW . . . G 5 -24.585 7.069 74.692 1 126.7 ? C27 PCW 1006 A 1 HETATM 26 C C28 PCW . . . G 5 -25.888 6.329 74.979 1 125.53 ? C28 PCW 1006 A 1 HETATM 27 C C31 PCW . . . G 5 -22.867 -1.672 58.34 1 96.32 ? C31 PCW 1006 A 1 HETATM 28 C C32 PCW . . . G 5 -23.697 -2.9 58.812 1 96.03 ? C32 PCW 1006 A 1 HETATM 29 C C33 PCW . . . G 5 -24.281 -2.613 60.227 1 92.53 ? C33 PCW 1006 A 1 HETATM 30 C C34 PCW . . . G 5 -23.921 -3.783 61.186 1 89.04 ? C34 PCW 1006 A 1 HETATM 31 C C35 PCW . . . G 5 -23.519 -3.183 62.565 1 89.08 ? C35 PCW 1006 A 1 HETATM 32 C C36 PCW . . . G 5 -22.092 -3.694 62.955 1 89.2 ? C36 PCW 1006 A 1 HETATM 33 C C37 PCW . . . G 5 -21.607 -2.946 64.235 1 92.6 ? C37 PCW 1006 A 1 HETATM 34 C C38 PCW . . . G 5 -22.309 -3.555 65.49 1 93.62 ? C38 PCW 1006 A 1 HETATM 35 C C39 PCW . . . G 5 -21.296 -4.43 66.26 1 94 ? C39 PCW 1006 A 1 HETATM 36 C C40 PCW . . . G 5 -21.733 -5.333 67.166 1 94.72 ? C40 PCW 1006 A 1 HETATM 37 C C41 PCW . . . G 5 -20.702 -6.203 67.931 1 93.23 ? C41 PCW 1006 A 1 HETATM 38 C C42 PCW . . . G 5 -20.118 -5.39 69.118 1 88.34 ? C42 PCW 1006 A 1 HETATM 39 C C43 PCW . . . G 5 -20.244 -6.22 70.427 1 85.62 ? C43 PCW 1006 A 1 HETATM 40 C C44 PCW . . . G 5 -20.582 -5.28 71.612 1 84.7 ? C44 PCW 1006 A 1 HETATM 41 C C45 PCW . . . G 5 -19.786 -5.716 72.858 1 85.27 ? C45 PCW 1006 A 1 HETATM 42 C C46 PCW . . . G 5 -20.599 -5.439 74.139 1 86.07 ? C46 PCW 1006 A 1 HETATM 43 C C47 PCW . . . G 5 -21.111 -6.763 74.727 1 88.19 ? C47 PCW 1006 A 1 HETATM 44 C C48 PCW . . . G 5 -22.445 -7.149 74.077 1 90.15 ? C48 PCW 1006 A 1 HETATM 45 N N PCW . . . G 5 -24.639 5.868 52.614 1 115.21 ? N PCW 1006 A 1 HETATM 46 O O2 PCW . . . G 5 -23.459 -0.371 58.364 1 97.09 ? O2 PCW 1006 A 1 HETATM 47 O O3 PCW . . . G 5 -21.072 0.643 59.301 1 104.69 ? O3 PCW 1006 A 1 HETATM 48 O O11 PCW . . . G 5 -19.927 2.523 59.795 1 106.37 ? O11 PCW 1006 A 1 HETATM 49 O O31 PCW . . . G 5 -21.752 -1.821 57.973 1 95.07 ? O31 PCW 1006 A 1 HETATM 50 O O1P PCW . . . G 5 -25.085 0.045 53.521 1 104.95 ? O1P PCW 1006 A 1 HETATM 51 O O2P PCW . . . G 5 -23.013 1.312 53.959 1 101.31 ? O2P PCW 1006 A 1 HETATM 52 O O3P PCW . . . G 5 -24.557 0.758 55.96 1 100.63 ? O3P PCW 1006 A 1 HETATM 53 O O4P PCW . . . G 5 -25.252 2.586 54.073 1 103.52 ? O4P PCW 1006 A 1 HETATM 54 P P PCW . . . G 5 -24.461 1.152 54.342 1 102.36 ? P PCW 1006 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 54 #