data_6HER
#
_model_server_result.job_id            JyjCAzgeLi9qh01DNr-hmw 
_model_server_result.datetime_utc      '2024-10-19 13:19:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6her 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":201}' 
#
_entry.id    6HER 
#
_exptl.entry_id    6HER 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6HER 
_cell.length_a            37.328 
_cell.length_b            74.646 
_cell.length_c            116.477 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6HER 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 62 A CYS 179 1_555 A SG CYS 97 A CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf2 B SG CYS 22 B CYS 22 1_555 B SG CYS 96 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     6HER 
_atom_sites.fract_transf_matrix[1][1]    0.02679 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013397 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008585 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 SO4 A 1 301 3 SO4 SO4 . 
D 4 GOL B 1 201 201 GOL GOL . 
E 3 SO4 B 1 202 1 SO4 SO4 . 
F 3 SO4 B 1 203 2 SO4 SO4 . 
G 5 HOH A 1 401 165 HOH HOH . 
G 5 HOH A 2 402 175 HOH HOH . 
G 5 HOH A 3 403 183 HOH HOH . 
G 5 HOH A 4 404 115 HOH HOH . 
G 5 HOH A 5 405 92 HOH HOH . 
G 5 HOH A 6 406 116 HOH HOH . 
G 5 HOH A 7 407 132 HOH HOH . 
G 5 HOH A 8 408 25 HOH HOH . 
G 5 HOH A 9 409 3 HOH HOH . 
G 5 HOH A 10 410 38 HOH HOH . 
G 5 HOH A 11 411 152 HOH HOH . 
G 5 HOH A 12 412 71 HOH HOH . 
G 5 HOH A 13 413 180 HOH HOH . 
G 5 HOH A 14 414 129 HOH HOH . 
G 5 HOH A 15 415 130 HOH HOH . 
G 5 HOH A 16 416 37 HOH HOH . 
G 5 HOH A 17 417 20 HOH HOH . 
G 5 HOH A 18 418 161 HOH HOH . 
G 5 HOH A 19 419 181 HOH HOH . 
G 5 HOH A 20 420 74 HOH HOH . 
G 5 HOH A 21 421 128 HOH HOH . 
G 5 HOH A 22 422 106 HOH HOH . 
G 5 HOH A 23 423 39 HOH HOH . 
G 5 HOH A 24 424 148 HOH HOH . 
G 5 HOH A 25 425 113 HOH HOH . 
G 5 HOH A 26 426 7 HOH HOH . 
G 5 HOH A 27 427 22 HOH HOH . 
G 5 HOH A 28 428 114 HOH HOH . 
G 5 HOH A 29 429 14 HOH HOH . 
G 5 HOH A 30 430 32 HOH HOH . 
G 5 HOH A 31 431 94 HOH HOH . 
G 5 HOH A 32 432 111 HOH HOH . 
G 5 HOH A 33 433 153 HOH HOH . 
G 5 HOH A 34 434 104 HOH HOH . 
G 5 HOH A 35 435 107 HOH HOH . 
G 5 HOH A 36 436 36 HOH HOH . 
G 5 HOH A 37 437 118 HOH HOH . 
G 5 HOH A 38 438 96 HOH HOH . 
G 5 HOH A 39 439 18 HOH HOH . 
G 5 HOH A 40 440 120 HOH HOH . 
G 5 HOH A 41 441 185 HOH HOH . 
G 5 HOH A 42 442 76 HOH HOH . 
G 5 HOH A 43 443 85 HOH HOH . 
G 5 HOH A 44 444 93 HOH HOH . 
G 5 HOH A 45 445 127 HOH HOH . 
G 5 HOH A 46 446 27 HOH HOH . 
G 5 HOH A 47 447 56 HOH HOH . 
G 5 HOH A 48 448 46 HOH HOH . 
G 5 HOH A 49 449 72 HOH HOH . 
G 5 HOH A 50 450 157 HOH HOH . 
G 5 HOH A 51 451 73 HOH HOH . 
G 5 HOH A 52 452 108 HOH HOH . 
G 5 HOH A 53 453 139 HOH HOH . 
G 5 HOH A 54 454 87 HOH HOH . 
G 5 HOH A 55 455 109 HOH HOH . 
G 5 HOH A 56 456 31 HOH HOH . 
G 5 HOH A 57 457 101 HOH HOH . 
G 5 HOH A 58 458 140 HOH HOH . 
G 5 HOH A 59 459 122 HOH HOH . 
G 5 HOH A 60 460 131 HOH HOH . 
G 5 HOH A 61 461 145 HOH HOH . 
H 5 HOH B 1 301 13 HOH HOH . 
H 5 HOH B 2 302 121 HOH HOH . 
H 5 HOH B 3 303 159 HOH HOH . 
H 5 HOH B 4 304 61 HOH HOH . 
H 5 HOH B 5 305 60 HOH HOH . 
H 5 HOH B 6 306 155 HOH HOH . 
H 5 HOH B 7 307 86 HOH HOH . 
H 5 HOH B 8 308 55 HOH HOH . 
H 5 HOH B 9 309 49 HOH HOH . 
H 5 HOH B 10 310 24 HOH HOH . 
H 5 HOH B 11 311 51 HOH HOH . 
H 5 HOH B 12 312 146 HOH HOH . 
H 5 HOH B 13 313 166 HOH HOH . 
H 5 HOH B 14 314 177 HOH HOH . 
H 5 HOH B 15 315 34 HOH HOH . 
H 5 HOH B 16 316 43 HOH HOH . 
H 5 HOH B 17 317 151 HOH HOH . 
H 5 HOH B 18 318 123 HOH HOH . 
H 5 HOH B 19 319 162 HOH HOH . 
H 5 HOH B 20 320 44 HOH HOH . 
H 5 HOH B 21 321 82 HOH HOH . 
H 5 HOH B 22 322 10 HOH HOH . 
H 5 HOH B 23 323 29 HOH HOH . 
H 5 HOH B 24 324 84 HOH HOH . 
H 5 HOH B 25 325 8 HOH HOH . 
H 5 HOH B 26 326 59 HOH HOH . 
H 5 HOH B 27 327 70 HOH HOH . 
H 5 HOH B 28 328 30 HOH HOH . 
H 5 HOH B 29 329 28 HOH HOH . 
H 5 HOH B 30 330 17 HOH HOH . 
H 5 HOH B 31 331 164 HOH HOH . 
H 5 HOH B 32 332 35 HOH HOH . 
H 5 HOH B 33 333 4 HOH HOH . 
H 5 HOH B 34 334 15 HOH HOH . 
H 5 HOH B 35 335 2 HOH HOH . 
H 5 HOH B 36 336 110 HOH HOH . 
H 5 HOH B 37 337 77 HOH HOH . 
H 5 HOH B 38 338 50 HOH HOH . 
H 5 HOH B 39 339 33 HOH HOH . 
H 5 HOH B 40 340 98 HOH HOH . 
H 5 HOH B 41 341 53 HOH HOH . 
H 5 HOH B 42 342 90 HOH HOH . 
H 5 HOH B 43 343 26 HOH HOH . 
H 5 HOH B 44 344 63 HOH HOH . 
H 5 HOH B 45 345 45 HOH HOH . 
H 5 HOH B 46 346 179 HOH HOH . 
H 5 HOH B 47 347 105 HOH HOH . 
H 5 HOH B 48 348 79 HOH HOH . 
H 5 HOH B 49 349 95 HOH HOH . 
H 5 HOH B 50 350 6 HOH HOH . 
H 5 HOH B 51 351 52 HOH HOH . 
H 5 HOH B 52 352 48 HOH HOH . 
H 5 HOH B 53 353 54 HOH HOH . 
H 5 HOH B 54 354 64 HOH HOH . 
H 5 HOH B 55 355 158 HOH HOH . 
H 5 HOH B 56 356 23 HOH HOH . 
H 5 HOH B 57 357 78 HOH HOH . 
H 5 HOH B 58 358 67 HOH HOH . 
H 5 HOH B 59 359 154 HOH HOH . 
H 5 HOH B 60 360 11 HOH HOH . 
H 5 HOH B 61 361 149 HOH HOH . 
H 5 HOH B 62 362 141 HOH HOH . 
H 5 HOH B 63 363 134 HOH HOH . 
H 5 HOH B 64 364 160 HOH HOH . 
H 5 HOH B 65 365 172 HOH HOH . 
H 5 HOH B 66 366 91 HOH HOH . 
H 5 HOH B 67 367 57 HOH HOH . 
H 5 HOH B 68 368 182 HOH HOH . 
H 5 HOH B 69 369 174 HOH HOH . 
H 5 HOH B 70 370 69 HOH HOH . 
H 5 HOH B 71 371 65 HOH HOH . 
H 5 HOH B 72 372 150 HOH HOH . 
H 5 HOH B 73 373 1 HOH HOH . 
H 5 HOH B 74 374 19 HOH HOH . 
H 5 HOH B 75 375 42 HOH HOH . 
H 5 HOH B 76 376 21 HOH HOH . 
H 5 HOH B 77 377 133 HOH HOH . 
H 5 HOH B 78 378 99 HOH HOH . 
H 5 HOH B 79 379 112 HOH HOH . 
H 5 HOH B 80 380 16 HOH HOH . 
H 5 HOH B 81 381 167 HOH HOH . 
H 5 HOH B 82 382 81 HOH HOH . 
H 5 HOH B 83 383 184 HOH HOH . 
H 5 HOH B 84 384 117 HOH HOH . 
H 5 HOH B 85 385 89 HOH HOH . 
H 5 HOH B 86 386 102 HOH HOH . 
H 5 HOH B 87 387 9 HOH HOH . 
H 5 HOH B 88 388 178 HOH HOH . 
H 5 HOH B 89 389 125 HOH HOH . 
H 5 HOH B 90 390 12 HOH HOH . 
H 5 HOH B 91 391 137 HOH HOH . 
H 5 HOH B 92 392 168 HOH HOH . 
H 5 HOH B 93 393 126 HOH HOH . 
H 5 HOH B 94 394 75 HOH HOH . 
H 5 HOH B 95 395 62 HOH HOH . 
H 5 HOH B 96 396 41 HOH HOH . 
H 5 HOH B 97 397 173 HOH HOH . 
H 5 HOH B 98 398 100 HOH HOH . 
H 5 HOH B 99 399 66 HOH HOH . 
H 5 HOH B 100 400 88 HOH HOH . 
H 5 HOH B 101 401 147 HOH HOH . 
H 5 HOH B 102 402 103 HOH HOH . 
H 5 HOH B 103 403 47 HOH HOH . 
H 5 HOH B 104 404 171 HOH HOH . 
H 5 HOH B 105 405 119 HOH HOH . 
H 5 HOH B 106 406 124 HOH HOH . 
H 5 HOH B 107 407 80 HOH HOH . 
H 5 HOH B 108 408 144 HOH HOH . 
H 5 HOH B 109 409 142 HOH HOH . 
H 5 HOH B 110 410 135 HOH HOH . 
H 5 HOH B 111 411 40 HOH HOH . 
H 5 HOH B 112 412 68 HOH HOH . 
H 5 HOH B 113 413 176 HOH HOH . 
H 5 HOH B 114 414 58 HOH HOH . 
H 5 HOH B 115 415 143 HOH HOH . 
H 5 HOH B 116 416 97 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 4.864 -22.547 -17.954 1 36.31 ? C1 GOL 201 B 1 
HETATM 2 O O1 GOL . . . D 4 5.827 -23.127 -17.164 1 80 ? O1 GOL 201 B 1 
HETATM 3 C C2 GOL . . . D 4 5.089 -23.097 -19.355 1 27.57 ? C2 GOL 201 B 1 
HETATM 4 O O2 GOL . . . D 4 5.194 -24.477 -19.36 1 94.28 ? O2 GOL 201 B 1 
HETATM 5 C C3 GOL . . . D 4 6.359 -22.409 -19.862 1 31.63 ? C3 GOL 201 B 1 
HETATM 6 O O3 GOL . . . D 4 7.437 -22.986 -19.228 1 28.42 ? O3 GOL 201 B 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           376 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           6 
#