data_6HGA
#
_model_server_result.job_id            VJChGUJk1Zt8GDvTOmwlqQ 
_model_server_result.datetime_utc      '2024-12-26 21:26:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6hga 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":501}' 
#
_entry.id    6HGA 
#
_exptl.entry_id    6HGA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6HGA 
_cell.length_a            250.91 
_cell.length_b            250.91 
_cell.length_c            78.61 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6HGA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        180 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 62 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 63 B CYS 270 1_555 A SG CYS 113 B CYS 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf2 A SG CYS 65 B CYS 272 1_555 A SG CYS 81 B CYS 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf3 A SG CYS 122 B CYS 329 1_555 A SG CYS 131 B CYS 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf4 A SG CYS 161 B CYS 368 1_555 A SG CYS 175 B CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
disulf ? disulf5 A SG CYS 203 B CYS 410 1_555 A SG CYS 210 B CYS 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf6 A SG CYS 237 B CYS 444 1_555 A SG CYS 251 B CYS 458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf7 B SG CYS 22 H CYS 22 1_555 B SG CYS 97 H CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
disulf ? disulf8 B SG CYS 134 H CYS 134 1_555 C SG CYS 219 L CYS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf9 B SG CYS 146 H CYS 146 1_555 B SG CYS 201 H CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf10 C SG CYS 23 L CYS 23 1_555 C SG CYS 93 L CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? 
disulf ? disulf11 C SG CYS 139 L CYS 139 1_555 C SG CYS 199 L CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
covale ? covale1 A ND2 ASN 46 B ASN 253 1_555 D C1 NAG . B NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
covale ? covale2 B C PCA 1 H PCA 1 1_555 B N VAL 2 H VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     6HGA 
_atom_sites.fract_transf_matrix[1][1]    0.003985 
_atom_sites.fract_transf_matrix[1][2]    0.002301 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004602 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012721 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 NAG B 1 501 501 NAG NAG . 
E 5 HOH H 1 301 47 HOH HOH . 
E 5 HOH H 2 302 73 HOH HOH . 
E 5 HOH H 3 303 11 HOH HOH . 
E 5 HOH H 4 304 33 HOH HOH . 
E 5 HOH H 5 305 3 HOH HOH . 
E 5 HOH H 6 306 67 HOH HOH . 
E 5 HOH H 7 307 6 HOH HOH . 
E 5 HOH H 8 308 44 HOH HOH . 
E 5 HOH H 9 309 28 HOH HOH . 
E 5 HOH H 10 310 22 HOH HOH . 
E 5 HOH H 11 311 61 HOH HOH . 
E 5 HOH H 12 312 57 HOH HOH . 
E 5 HOH H 13 313 25 HOH HOH . 
E 5 HOH H 14 314 5 HOH HOH . 
E 5 HOH H 15 315 16 HOH HOH . 
E 5 HOH H 16 316 72 HOH HOH . 
E 5 HOH H 17 317 55 HOH HOH . 
E 5 HOH H 18 318 4 HOH HOH . 
E 5 HOH H 19 319 18 HOH HOH . 
E 5 HOH H 20 320 20 HOH HOH . 
E 5 HOH H 21 321 41 HOH HOH . 
E 5 HOH H 22 322 54 HOH HOH . 
E 5 HOH H 23 323 59 HOH HOH . 
E 5 HOH H 24 324 27 HOH HOH . 
E 5 HOH H 25 325 68 HOH HOH . 
E 5 HOH H 26 326 65 HOH HOH . 
E 5 HOH H 27 327 71 HOH HOH . 
E 5 HOH H 28 328 38 HOH HOH . 
E 5 HOH H 29 329 48 HOH HOH . 
E 5 HOH H 30 330 63 HOH HOH . 
E 5 HOH H 31 331 56 HOH HOH . 
E 5 HOH H 32 332 14 HOH HOH . 
E 5 HOH H 33 333 23 HOH HOH . 
E 5 HOH H 34 334 74 HOH HOH . 
E 5 HOH H 35 335 51 HOH HOH . 
E 5 HOH H 36 336 60 HOH HOH . 
F 5 HOH L 1 301 12 HOH HOH . 
F 5 HOH L 2 302 49 HOH HOH . 
F 5 HOH L 3 303 43 HOH HOH . 
F 5 HOH L 4 304 45 HOH HOH . 
F 5 HOH L 5 305 46 HOH HOH . 
F 5 HOH L 6 306 64 HOH HOH . 
F 5 HOH L 7 307 13 HOH HOH . 
F 5 HOH L 8 308 58 HOH HOH . 
F 5 HOH L 9 309 37 HOH HOH . 
F 5 HOH L 10 310 66 HOH HOH . 
F 5 HOH L 11 311 35 HOH HOH . 
F 5 HOH L 12 312 26 HOH HOH . 
F 5 HOH L 13 313 40 HOH HOH . 
F 5 HOH L 14 314 29 HOH HOH . 
F 5 HOH L 15 315 30 HOH HOH . 
F 5 HOH L 16 316 19 HOH HOH . 
F 5 HOH L 17 317 31 HOH HOH . 
F 5 HOH L 18 318 10 HOH HOH . 
F 5 HOH L 19 319 8 HOH HOH . 
F 5 HOH L 20 320 15 HOH HOH . 
F 5 HOH L 21 321 7 HOH HOH . 
F 5 HOH L 22 322 34 HOH HOH . 
F 5 HOH L 23 323 39 HOH HOH . 
F 5 HOH L 24 324 17 HOH HOH . 
F 5 HOH L 25 325 1 HOH HOH . 
F 5 HOH L 26 326 32 HOH HOH . 
F 5 HOH L 27 327 69 HOH HOH . 
F 5 HOH L 28 328 42 HOH HOH . 
F 5 HOH L 29 329 62 HOH HOH . 
F 5 HOH L 30 330 21 HOH HOH . 
F 5 HOH L 31 331 52 HOH HOH . 
F 5 HOH L 32 332 36 HOH HOH . 
F 5 HOH L 33 333 53 HOH HOH . 
F 5 HOH L 34 334 24 HOH HOH . 
F 5 HOH L 35 335 70 HOH HOH . 
F 5 HOH L 36 336 2 HOH HOH . 
F 5 HOH L 37 337 9 HOH HOH . 
F 5 HOH L 38 338 50 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . D 4 37.02 75.999 57.306 1 157.08 ? C1 NAG 501 B 1 
HETATM 2 C C2 NAG . . . D 4 35.915 76.145 58.352 1 157.06 ? C2 NAG 501 B 1 
HETATM 3 C C3 NAG . . . D 4 36.19 77.322 59.288 1 155.15 ? C3 NAG 501 B 1 
HETATM 4 C C4 NAG . . . D 4 37.565 77.187 59.932 1 156.13 ? C4 NAG 501 B 1 
HETATM 5 C C5 NAG . . . D 4 38.647 76.933 58.879 1 156.38 ? C5 NAG 501 B 1 
HETATM 6 C C6 NAG . . . D 4 39.98 76.56 59.494 1 156.58 ? C6 NAG 501 B 1 
HETATM 7 C C7 NAG . . . D 4 33.518 75.629 58.156 1 160.18 ? C7 NAG 501 B 1 
HETATM 8 C C8 NAG . . . D 4 32.281 75.802 57.324 1 158.98 ? C8 NAG 501 B 1 
HETATM 9 N N2 NAG . . . D 4 34.609 76.278 57.726 1 157.88 ? N2 NAG 501 B 1 
HETATM 10 O O3 NAG . . . D 4 35.205 77.347 60.316 1 154.79 ? O3 NAG 501 B 1 
HETATM 11 O O4 NAG . . . D 4 37.86 78.368 60.672 1 154.63 ? O4 NAG 501 B 1 
HETATM 12 O O5 NAG . . . D 4 38.267 75.842 58.008 1 158.07 ? O5 NAG 501 B 1 
HETATM 13 O O6 NAG . . . D 4 41.015 76.495 58.527 1 157.24 ? O6 NAG 501 B 1 
HETATM 14 O O7 NAG . . . D 4 33.529 74.933 59.169 1 163.01 ? O7 NAG 501 B 1 
#
_model_server_stats.io_time_ms              86 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           14 
#