data_6HGH # _model_server_result.job_id mmq0wjD07fdHgYhs6XbBHA _model_server_result.datetime_utc '2024-12-01 07:04:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hgh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 6HGH # _exptl.entry_id 6HGH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 104.061 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6HGH _cell.length_a 48.16 _cell.length_b 79.3 _cell.length_c 102.2 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HGH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H4 O4' _chem_comp.formula_weight 104.061 _chem_comp.id MLA _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'DICARBOXYLIC ACID C3;PROPANEDIOLIC ACID;METHANEDICARBOXYLIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1A MLA sing 237 n n C1 O1B MLA doub 238 n n C1 C2 MLA sing 239 n n O1A H1A MLA sing 240 n n C2 C3 MLA sing 241 n n C2 HC21 MLA sing 242 n n C2 HC22 MLA sing 243 n n C3 O3A MLA doub 244 n n C3 O3B MLA sing 245 n n O3B H3B MLA sing 246 n n # _atom_sites.entry_id 6HGH _atom_sites.fract_transf_matrix[1][1] 0.020764 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01261 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009785 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MLA A 1 401 1 MLA MLA . D 4 HOH A 1 501 72 HOH HOH . D 4 HOH A 2 502 124 HOH HOH . D 4 HOH A 3 503 70 HOH HOH . D 4 HOH A 4 504 111 HOH HOH . D 4 HOH A 5 505 41 HOH HOH . D 4 HOH A 6 506 129 HOH HOH . D 4 HOH A 7 507 127 HOH HOH . D 4 HOH A 8 508 87 HOH HOH . D 4 HOH A 9 509 25 HOH HOH . D 4 HOH A 10 510 48 HOH HOH . D 4 HOH A 11 511 96 HOH HOH . D 4 HOH A 12 512 50 HOH HOH . D 4 HOH A 13 513 79 HOH HOH . D 4 HOH A 14 514 99 HOH HOH . D 4 HOH A 15 515 23 HOH HOH . D 4 HOH A 16 516 19 HOH HOH . D 4 HOH A 17 517 4 HOH HOH . D 4 HOH A 18 518 52 HOH HOH . D 4 HOH A 19 519 60 HOH HOH . D 4 HOH A 20 520 5 HOH HOH . D 4 HOH A 21 521 16 HOH HOH . D 4 HOH A 22 522 88 HOH HOH . D 4 HOH A 23 523 118 HOH HOH . D 4 HOH A 24 524 24 HOH HOH . D 4 HOH A 25 525 7 HOH HOH . D 4 HOH A 26 526 74 HOH HOH . D 4 HOH A 27 527 10 HOH HOH . D 4 HOH A 28 528 33 HOH HOH . D 4 HOH A 29 529 98 HOH HOH . D 4 HOH A 30 530 61 HOH HOH . D 4 HOH A 31 531 28 HOH HOH . D 4 HOH A 32 532 13 HOH HOH . D 4 HOH A 33 533 36 HOH HOH . D 4 HOH A 34 534 42 HOH HOH . D 4 HOH A 35 535 134 HOH HOH . D 4 HOH A 36 536 51 HOH HOH . D 4 HOH A 37 537 78 HOH HOH . D 4 HOH A 38 538 12 HOH HOH . D 4 HOH A 39 539 101 HOH HOH . D 4 HOH A 40 540 108 HOH HOH . D 4 HOH A 41 541 15 HOH HOH . D 4 HOH A 42 542 123 HOH HOH . D 4 HOH A 43 543 92 HOH HOH . D 4 HOH A 44 544 39 HOH HOH . D 4 HOH A 45 545 121 HOH HOH . D 4 HOH A 46 546 131 HOH HOH . D 4 HOH A 47 547 133 HOH HOH . D 4 HOH A 48 548 106 HOH HOH . D 4 HOH A 49 549 32 HOH HOH . D 4 HOH A 50 550 104 HOH HOH . D 4 HOH A 51 551 9 HOH HOH . D 4 HOH A 52 552 110 HOH HOH . D 4 HOH A 53 553 6 HOH HOH . D 4 HOH A 54 554 46 HOH HOH . D 4 HOH A 55 555 102 HOH HOH . D 4 HOH A 56 556 82 HOH HOH . D 4 HOH A 57 557 126 HOH HOH . D 4 HOH A 58 558 38 HOH HOH . D 4 HOH A 59 559 103 HOH HOH . D 4 HOH A 60 560 55 HOH HOH . D 4 HOH A 61 561 20 HOH HOH . D 4 HOH A 62 562 86 HOH HOH . D 4 HOH A 63 563 26 HOH HOH . D 4 HOH A 64 564 93 HOH HOH . D 4 HOH A 65 565 125 HOH HOH . D 4 HOH A 66 566 30 HOH HOH . D 4 HOH A 67 567 81 HOH HOH . D 4 HOH A 68 568 14 HOH HOH . D 4 HOH A 69 569 8 HOH HOH . D 4 HOH A 70 570 120 HOH HOH . D 4 HOH A 71 571 54 HOH HOH . D 4 HOH A 72 572 56 HOH HOH . D 4 HOH A 73 573 115 HOH HOH . D 4 HOH A 74 574 27 HOH HOH . D 4 HOH A 75 575 116 HOH HOH . D 4 HOH A 76 576 128 HOH HOH . D 4 HOH A 77 577 62 HOH HOH . D 4 HOH A 78 578 76 HOH HOH . D 4 HOH A 79 579 49 HOH HOH . D 4 HOH A 80 580 17 HOH HOH . D 4 HOH A 81 581 132 HOH HOH . D 4 HOH A 82 582 122 HOH HOH . D 4 HOH A 83 583 35 HOH HOH . D 4 HOH A 84 584 119 HOH HOH . D 4 HOH A 85 585 91 HOH HOH . D 4 HOH A 86 586 63 HOH HOH . D 4 HOH A 87 587 114 HOH HOH . D 4 HOH A 88 588 117 HOH HOH . D 4 HOH A 89 589 113 HOH HOH . D 4 HOH A 90 590 112 HOH HOH . D 4 HOH A 91 591 97 HOH HOH . D 4 HOH A 92 592 89 HOH HOH . D 4 HOH A 93 593 3 HOH HOH . D 4 HOH A 94 594 57 HOH HOH . D 4 HOH A 95 595 77 HOH HOH . D 4 HOH A 96 596 109 HOH HOH . D 4 HOH A 97 597 100 HOH HOH . E 4 HOH B 1 501 43 HOH HOH . E 4 HOH B 2 502 47 HOH HOH . E 4 HOH B 3 503 58 HOH HOH . E 4 HOH B 4 504 94 HOH HOH . E 4 HOH B 5 505 11 HOH HOH . E 4 HOH B 6 506 1 HOH HOH . E 4 HOH B 7 507 45 HOH HOH . E 4 HOH B 8 508 40 HOH HOH . E 4 HOH B 9 509 95 HOH HOH . E 4 HOH B 10 510 18 HOH HOH . E 4 HOH B 11 511 2 HOH HOH . E 4 HOH B 12 512 67 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLA . . . C 3 -24.364 -0.691 21.047 1 53.75 ? C1 MLA 401 A 1 HETATM 2 O O1A MLA . . . C 3 -24.371 -1.198 22.226 1 65.09 ? O1A MLA 401 A 1 HETATM 3 O O1B MLA . . . C 3 -25.41 -0.591 20.384 1 52.52 ? O1B MLA 401 A 1 HETATM 4 C C2 MLA . . . C 3 -23.002 -0.223 20.551 1 49.48 ? C2 MLA 401 A 1 HETATM 5 C C3 MLA . . . C 3 -21.672 -0.814 21.057 1 57.69 ? C3 MLA 401 A 1 HETATM 6 O O3A MLA . . . C 3 -20.645 -0.176 20.643 1 56.8 ? O3A MLA 401 A 1 HETATM 7 O O3B MLA . . . C 3 -21.573 -1.826 21.816 1 52.18 ? O3B MLA 401 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 436 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 7 #