data_6HGN # _model_server_result.job_id Q6i6Cwe0Fz9CvOP7dlU1Fw _model_server_result.datetime_utc '2024-12-01 06:48:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hgn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":403}' # _entry.id 6HGN # _exptl.entry_id 6HGN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6HGN _cell.length_a 84.832 _cell.length_b 84.832 _cell.length_c 97.066 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HGN _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6HGN _atom_sites.fract_transf_matrix[1][1] 0.011788 _atom_sites.fract_transf_matrix[1][2] 0.006806 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013612 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010302 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EDO A 1 401 1 EDO EDO . D 3 EDO A 1 402 2 EDO EDO . E 3 EDO A 1 403 3 EDO EDO . F 3 EDO A 1 404 4 EDO EDO . G 4 HOH A 1 501 201 HOH HOH . G 4 HOH A 2 502 302 HOH HOH . G 4 HOH A 3 503 91 HOH HOH . G 4 HOH A 4 504 338 HOH HOH . G 4 HOH A 5 505 109 HOH HOH . G 4 HOH A 6 506 160 HOH HOH . G 4 HOH A 7 507 143 HOH HOH . G 4 HOH A 8 508 269 HOH HOH . G 4 HOH A 9 509 329 HOH HOH . G 4 HOH A 10 510 262 HOH HOH . G 4 HOH A 11 511 137 HOH HOH . G 4 HOH A 12 512 73 HOH HOH . G 4 HOH A 13 513 328 HOH HOH . G 4 HOH A 14 514 27 HOH HOH . G 4 HOH A 15 515 267 HOH HOH . G 4 HOH A 16 516 187 HOH HOH . G 4 HOH A 17 517 40 HOH HOH . G 4 HOH A 18 518 124 HOH HOH . G 4 HOH A 19 519 165 HOH HOH . G 4 HOH A 20 520 233 HOH HOH . G 4 HOH A 21 521 292 HOH HOH . G 4 HOH A 22 522 202 HOH HOH . G 4 HOH A 23 523 111 HOH HOH . G 4 HOH A 24 524 311 HOH HOH . G 4 HOH A 25 525 119 HOH HOH . G 4 HOH A 26 526 115 HOH HOH . G 4 HOH A 27 527 281 HOH HOH . G 4 HOH A 28 528 72 HOH HOH . G 4 HOH A 29 529 98 HOH HOH . G 4 HOH A 30 530 275 HOH HOH . G 4 HOH A 31 531 252 HOH HOH . G 4 HOH A 32 532 189 HOH HOH . G 4 HOH A 33 533 35 HOH HOH . G 4 HOH A 34 534 31 HOH HOH . G 4 HOH A 35 535 118 HOH HOH . G 4 HOH A 36 536 13 HOH HOH . G 4 HOH A 37 537 53 HOH HOH . G 4 HOH A 38 538 126 HOH HOH . G 4 HOH A 39 539 19 HOH HOH . G 4 HOH A 40 540 113 HOH HOH . G 4 HOH A 41 541 2 HOH HOH . G 4 HOH A 42 542 225 HOH HOH . G 4 HOH A 43 543 16 HOH HOH . G 4 HOH A 44 544 182 HOH HOH . G 4 HOH A 45 545 337 HOH HOH . G 4 HOH A 46 546 133 HOH HOH . G 4 HOH A 47 547 23 HOH HOH . G 4 HOH A 48 548 59 HOH HOH . G 4 HOH A 49 549 4 HOH HOH . G 4 HOH A 50 550 77 HOH HOH . G 4 HOH A 51 551 331 HOH HOH . G 4 HOH A 52 552 101 HOH HOH . G 4 HOH A 53 553 12 HOH HOH . G 4 HOH A 54 554 241 HOH HOH . G 4 HOH A 55 555 71 HOH HOH . G 4 HOH A 56 556 130 HOH HOH . G 4 HOH A 57 557 294 HOH HOH . G 4 HOH A 58 558 82 HOH HOH . G 4 HOH A 59 559 22 HOH HOH . G 4 HOH A 60 560 63 HOH HOH . G 4 HOH A 61 561 152 HOH HOH . G 4 HOH A 62 562 6 HOH HOH . G 4 HOH A 63 563 153 HOH HOH . G 4 HOH A 64 564 210 HOH HOH . G 4 HOH A 65 565 169 HOH HOH . G 4 HOH A 66 566 282 HOH HOH . G 4 HOH A 67 567 21 HOH HOH . G 4 HOH A 68 568 8 HOH HOH . G 4 HOH A 69 569 61 HOH HOH . G 4 HOH A 70 570 184 HOH HOH . G 4 HOH A 71 571 121 HOH HOH . G 4 HOH A 72 572 330 HOH HOH . G 4 HOH A 73 573 320 HOH HOH . G 4 HOH A 74 574 236 HOH HOH . G 4 HOH A 75 575 163 HOH HOH . G 4 HOH A 76 576 43 HOH HOH . G 4 HOH A 77 577 26 HOH HOH . G 4 HOH A 78 578 318 HOH HOH . G 4 HOH A 79 579 132 HOH HOH . G 4 HOH A 80 580 18 HOH HOH . G 4 HOH A 81 581 131 HOH HOH . G 4 HOH A 82 582 135 HOH HOH . G 4 HOH A 83 583 34 HOH HOH . G 4 HOH A 84 584 92 HOH HOH . G 4 HOH A 85 585 29 HOH HOH . G 4 HOH A 86 586 42 HOH HOH . G 4 HOH A 87 587 7 HOH HOH . G 4 HOH A 88 588 1 HOH HOH . G 4 HOH A 89 589 85 HOH HOH . G 4 HOH A 90 590 3 HOH HOH . G 4 HOH A 91 591 238 HOH HOH . G 4 HOH A 92 592 305 HOH HOH . G 4 HOH A 93 593 94 HOH HOH . G 4 HOH A 94 594 180 HOH HOH . G 4 HOH A 95 595 51 HOH HOH . G 4 HOH A 96 596 89 HOH HOH . G 4 HOH A 97 597 39 HOH HOH . G 4 HOH A 98 598 62 HOH HOH . G 4 HOH A 99 599 17 HOH HOH . G 4 HOH A 100 600 90 HOH HOH . G 4 HOH A 101 601 93 HOH HOH . G 4 HOH A 102 602 283 HOH HOH . G 4 HOH A 103 603 179 HOH HOH . G 4 HOH A 104 604 114 HOH HOH . G 4 HOH A 105 605 123 HOH HOH . G 4 HOH A 106 606 151 HOH HOH . G 4 HOH A 107 607 155 HOH HOH . G 4 HOH A 108 608 129 HOH HOH . G 4 HOH A 109 609 128 HOH HOH . G 4 HOH A 110 610 144 HOH HOH . G 4 HOH A 111 611 245 HOH HOH . G 4 HOH A 112 612 112 HOH HOH . G 4 HOH A 113 613 304 HOH HOH . G 4 HOH A 114 614 154 HOH HOH . G 4 HOH A 115 615 28 HOH HOH . G 4 HOH A 116 616 277 HOH HOH . G 4 HOH A 117 617 166 HOH HOH . G 4 HOH A 118 618 41 HOH HOH . G 4 HOH A 119 619 323 HOH HOH . G 4 HOH A 120 620 240 HOH HOH . G 4 HOH A 121 621 37 HOH HOH . G 4 HOH A 122 622 223 HOH HOH . G 4 HOH A 123 623 87 HOH HOH . G 4 HOH A 124 624 175 HOH HOH . G 4 HOH A 125 625 68 HOH HOH . G 4 HOH A 126 626 309 HOH HOH . G 4 HOH A 127 627 95 HOH HOH . G 4 HOH A 128 628 54 HOH HOH . G 4 HOH A 129 629 125 HOH HOH . G 4 HOH A 130 630 228 HOH HOH . G 4 HOH A 131 631 273 HOH HOH . G 4 HOH A 132 632 15 HOH HOH . G 4 HOH A 133 633 254 HOH HOH . G 4 HOH A 134 634 76 HOH HOH . G 4 HOH A 135 635 102 HOH HOH . G 4 HOH A 136 636 310 HOH HOH . G 4 HOH A 137 637 66 HOH HOH . G 4 HOH A 138 638 96 HOH HOH . G 4 HOH A 139 639 138 HOH HOH . G 4 HOH A 140 640 44 HOH HOH . G 4 HOH A 141 641 204 HOH HOH . G 4 HOH A 142 642 80 HOH HOH . G 4 HOH A 143 643 47 HOH HOH . G 4 HOH A 144 644 312 HOH HOH . G 4 HOH A 145 645 122 HOH HOH . G 4 HOH A 146 646 159 HOH HOH . G 4 HOH A 147 647 30 HOH HOH . G 4 HOH A 148 648 185 HOH HOH . G 4 HOH A 149 649 256 HOH HOH . G 4 HOH A 150 650 116 HOH HOH . G 4 HOH A 151 651 33 HOH HOH . G 4 HOH A 152 652 88 HOH HOH . G 4 HOH A 153 653 83 HOH HOH . G 4 HOH A 154 654 136 HOH HOH . G 4 HOH A 155 655 14 HOH HOH . G 4 HOH A 156 656 208 HOH HOH . G 4 HOH A 157 657 38 HOH HOH . G 4 HOH A 158 658 178 HOH HOH . G 4 HOH A 159 659 234 HOH HOH . G 4 HOH A 160 660 74 HOH HOH . G 4 HOH A 161 661 103 HOH HOH . G 4 HOH A 162 662 64 HOH HOH . G 4 HOH A 163 663 25 HOH HOH . G 4 HOH A 164 664 157 HOH HOH . G 4 HOH A 165 665 272 HOH HOH . G 4 HOH A 166 666 188 HOH HOH . G 4 HOH A 167 667 10 HOH HOH . G 4 HOH A 168 668 58 HOH HOH . G 4 HOH A 169 669 104 HOH HOH . G 4 HOH A 170 670 67 HOH HOH . G 4 HOH A 171 671 336 HOH HOH . G 4 HOH A 172 672 276 HOH HOH . G 4 HOH A 173 673 49 HOH HOH . G 4 HOH A 174 674 332 HOH HOH . G 4 HOH A 175 675 232 HOH HOH . G 4 HOH A 176 676 173 HOH HOH . G 4 HOH A 177 677 333 HOH HOH . G 4 HOH A 178 678 334 HOH HOH . G 4 HOH A 179 679 278 HOH HOH . G 4 HOH A 180 680 81 HOH HOH . G 4 HOH A 181 681 274 HOH HOH . G 4 HOH A 182 682 279 HOH HOH . G 4 HOH A 183 683 55 HOH HOH . G 4 HOH A 184 684 216 HOH HOH . G 4 HOH A 185 685 242 HOH HOH . G 4 HOH A 186 686 198 HOH HOH . G 4 HOH A 187 687 325 HOH HOH . G 4 HOH A 188 688 319 HOH HOH . G 4 HOH A 189 689 60 HOH HOH . G 4 HOH A 190 690 110 HOH HOH . G 4 HOH A 191 691 172 HOH HOH . G 4 HOH A 192 692 287 HOH HOH . G 4 HOH A 193 693 75 HOH HOH . G 4 HOH A 194 694 299 HOH HOH . G 4 HOH A 195 695 327 HOH HOH . G 4 HOH A 196 696 20 HOH HOH . G 4 HOH A 197 697 230 HOH HOH . G 4 HOH A 198 698 288 HOH HOH . G 4 HOH A 199 699 296 HOH HOH . G 4 HOH A 200 700 150 HOH HOH . G 4 HOH A 201 701 106 HOH HOH . G 4 HOH A 202 702 335 HOH HOH . G 4 HOH A 203 703 167 HOH HOH . G 4 HOH A 204 704 313 HOH HOH . G 4 HOH A 205 705 290 HOH HOH . G 4 HOH A 206 706 301 HOH HOH . G 4 HOH A 207 707 177 HOH HOH . G 4 HOH A 208 708 164 HOH HOH . G 4 HOH A 209 709 78 HOH HOH . G 4 HOH A 210 710 183 HOH HOH . G 4 HOH A 211 711 255 HOH HOH . G 4 HOH A 212 712 214 HOH HOH . G 4 HOH A 213 713 205 HOH HOH . G 4 HOH A 214 714 46 HOH HOH . G 4 HOH A 215 715 141 HOH HOH . G 4 HOH A 216 716 120 HOH HOH . G 4 HOH A 217 717 48 HOH HOH . G 4 HOH A 218 718 117 HOH HOH . G 4 HOH A 219 719 140 HOH HOH . G 4 HOH A 220 720 297 HOH HOH . G 4 HOH A 221 721 303 HOH HOH . G 4 HOH A 222 722 229 HOH HOH . G 4 HOH A 223 723 284 HOH HOH . G 4 HOH A 224 724 324 HOH HOH . G 4 HOH A 225 725 249 HOH HOH . G 4 HOH A 226 726 322 HOH HOH . G 4 HOH A 227 727 174 HOH HOH . G 4 HOH A 228 728 79 HOH HOH . G 4 HOH A 229 729 50 HOH HOH . G 4 HOH A 230 730 105 HOH HOH . G 4 HOH A 231 731 192 HOH HOH . G 4 HOH A 232 732 285 HOH HOH . G 4 HOH A 233 733 314 HOH HOH . G 4 HOH A 234 734 191 HOH HOH . G 4 HOH A 235 735 69 HOH HOH . G 4 HOH A 236 736 86 HOH HOH . G 4 HOH A 237 737 231 HOH HOH . G 4 HOH A 238 738 207 HOH HOH . G 4 HOH A 239 739 227 HOH HOH . G 4 HOH A 240 740 56 HOH HOH . G 4 HOH A 241 741 295 HOH HOH . H 4 HOH B 1 501 36 HOH HOH . H 4 HOH B 2 502 142 HOH HOH . H 4 HOH B 3 503 5 HOH HOH . H 4 HOH B 4 504 24 HOH HOH . H 4 HOH B 5 505 168 HOH HOH . H 4 HOH B 6 506 52 HOH HOH . H 4 HOH B 7 507 280 HOH HOH . H 4 HOH B 8 508 139 HOH HOH . H 4 HOH B 9 509 84 HOH HOH . H 4 HOH B 10 510 45 HOH HOH . H 4 HOH B 11 511 57 HOH HOH . H 4 HOH B 12 512 107 HOH HOH . H 4 HOH B 13 513 181 HOH HOH . H 4 HOH B 14 514 316 HOH HOH . H 4 HOH B 15 515 176 HOH HOH . H 4 HOH B 16 516 219 HOH HOH . H 4 HOH B 17 517 326 HOH HOH . H 4 HOH B 18 518 258 HOH HOH . H 4 HOH B 19 519 99 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 3 -8.665 27.265 -33.181 1 63.08 ? C1 EDO 403 A 1 HETATM 2 O O1 EDO . . . E 3 -8.703 27.252 -34.611 1 54.5 ? O1 EDO 403 A 1 HETATM 3 C C2 EDO . . . E 3 -9.497 28.437 -32.666 1 62.47 ? C2 EDO 403 A 1 HETATM 4 O O2 EDO . . . E 3 -8.955 29.676 -33.141 1 50.62 ? O2 EDO 403 A 1 HETATM 5 H H11 EDO . . . E 3 -9.063 26.326 -32.79 1 75.69 ? H11 EDO 403 A 1 HETATM 6 H H12 EDO . . . E 3 -7.633 27.361 -32.837 1 75.69 ? H12 EDO 403 A 1 HETATM 7 H HO1 EDO . . . E 3 -8.176 26.511 -34.941 1 65.4 ? HO1 EDO 403 A 1 HETATM 8 H H21 EDO . . . E 3 -10.529 28.333 -33.007 1 74.96 ? H21 EDO 403 A 1 HETATM 9 H H22 EDO . . . E 3 -9.501 28.433 -31.574 1 74.96 ? H22 EDO 403 A 1 HETATM 10 H HO2 EDO . . . E 3 -9.279 30.401 -32.589 1 60.75 ? HO2 EDO 403 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 10 #